Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Arabis_20nordmanniana_20[genbank_20GCA_5F001484925.1_202016-01-04] 267,228 sequences; 342,306,570 total letters Query= NC_025416.1 Length=141907 Score E Sequences producing significant alignments: (Bits) Value seq158858 197 1e-45 seq111679 131 2e-25 seq151743 82.4 7e-11 >seq158858 Length=235449 Score = 197 bits (218), Expect = 1e-45 Identities = 391/575 (68%), Gaps = 8/575 (1%) Strand=Plus/Plus Query 134205 TTATTACAATGCAGATGTAGAAAAGGAAATAGTTGTTGCTTCTATCCCTGCTACTGAGCA 134264 |||||||||||| | | ||||||||| |||| | | || || || |||||||| || Sbjct 214278 TTATTACAATGCGAACATTGAAAAGGAATTAGTAGGAACATCAATACCAGCTACTGAACA 214337 Query 134265 TTCAGTTATGTGTGCAAACGGTGATTATGAAACAATGGATGAGTACAAGACATACAAACG 134324 ||||||||||| |||||| ||| || | ||||| | | | | ||||| || Sbjct 214338 TTCAGTTATGTCAGCAAACACAGATGCAGATAGCCGTGATGAATTCGAAATGTACAAGCG 214397 Query 134325 TATGTTAACAGAAATTTACCCAACAGGAATATTTTCTATTGTATCCGATACGTGGGACTT 134384 | | |||| || | || || | ||| | || | | || || || |||| || || Sbjct 214398 TCTTATAACTGAGGTATATCCTAAAGGCTTCTTCAGTGTAGTTTCAGACACGTATGATTT 214457 Query 134385 TTGGG--GTAATATGACTAAAACTTTACCTAGACTAAAAGATATTATTATGGAACGTGAT 134442 |||| ||| || || || ||| ||| | || || | || |||||||||||| Sbjct 214458 CTGGGCAGTAGTAGGAGAAATTCTT--CCTCGTCTTAAGAAGGAAATCATGGAACGTGAT 214515 Query 134443 GGGAAAGTAGTAATCAGACCTGATAGTGGAGACCCTGTTAAGATTATTTGTGGTGACCCT 134502 || | || || | ||||||||||||||||||||| ||| || |||| |||| Sbjct 214516 GGTCGTATGGTTATTCGTCCTGATAGTGGAGACCCTGTTCTTATTCTTACTGGTAACCCA 214575 Query 134503 GACGCAGATACTGAGTATGAACGTAAAGGTGCTGTAGAGGTACTTTGGGATACTTTTGGA 134562 || ||| | || || |||||||||||| | |||| | ||||||| ||||| Sbjct 214576 GAAGCAAAAACAGAACTTGAACGTAAAGGACTAATTGAGGCTTTATGGGATATCTTTGGT 214635 Query 134563 GGTACTGAAACTGAAAAAGGATATAAATTACTAGATGAACATGTAGGATTAATTTATGGA 134622 || || ||||| || || |||||| || ||||| ||| | || ||| ||||| Sbjct 214636 GGAACAATTACTGAGAAGGGTTATAAACTATTAGATACTCATATTGGTGCAATCTATGGT 214695 Query 134623 GACTCTATTAACTATGAGCGTGCACAACAAAT--TTGTGAAGGATTAAAAGAAAAAGGTT 134680 |||||||||| |||||||||| || || ||| |||| ||| |||||||||| | Sbjct 214696 GACTCTATTACTCTTGAGCGTGCAAAAGCTATTGTTGAGAAG--TTAGAAGAAAAAGGCT 214753 Query 134681 TTGCAAGTATTAACGTTGTATTAGGTGTAGGTAGTTTCTCTTACCAGTTTAATACTCGTG 134740 |||| | |||||||| || || || || || ||| ||| | | | ||||| | Sbjct 214754 TTGCTTCAACAAACGTTGTTTTCGGCGTGGGATCTTATACTTTCCAATATCAGACTCGCG 214813 Query 134741 ATACTCATGGTTTTGCAATCAAAGCAACCTATGCT 134775 || ||| || ||||| || ||||| || |||||| Sbjct 214814 ATTCTCTAGGGTTTGCTATGAAAGCTACATATGCT 214848 >seq111679 Length=1463 Score = 131 bits (144), Expect = 2e-25 Identities = 251/369 (68%), Gaps = 6/369 (2%) Strand=Plus/Plus Query 22786 TTGTACAAAGTTTACTAAATCC---TCATTACTTGATAGTTGGTGTTCTACCTTATTATC 22842 ||||||||| | |||||| || |||| ||| |||| | |||| | | ||| Sbjct 1089 TTGTACAAACTCTACTAATTCTGTATCATCACTA---AGTTTTTTCTCTAGTTCTTCATC 1145 Query 22843 ATAATCAAATTCAACTTGAGCAAAACGGTCTAATGTATCTCCATCCAGTTGCTGTCTTCC 22902 ||| | ||| || | | |||| | ||| |||||| | |||| ||| || | ||| Sbjct 1146 ATAGTTAAAGTCTAAAAGTACAAACCTGTCCAATGTAGCAGCATCTAGTATATGACGTCC 1205 Query 22903 TACATAAATGTGGTCTGCCCCAGTTCCCATAGTATTACCTGCTGATACTACTCTAAAGTC 22962 | ||| ||||| || || | || | |||||| | || | ||||| |||| || Sbjct 1206 TGTATACTGCTGGTCAGCTCCCCTACCTGTTGTATTAGCAGCAGCCACTACAGTAAAATC 1265 Query 22963 TTCATGTGCTGTCACACGACCAATAGGGAAGTCAAAGTATTTATTTGCAATAGCTGAGTT 23022 ||||||| | |||| |||| || | |||||| ||| ||||| || | || Sbjct 1266 AGGATGTGCTTGAGCTTTACCATTAGGAAAATTAAAGTACCGATTAGCAATTGCAGCATT 1325 Query 23023 AAGAATTAGTAATACTTCAGGGATAGATGCATCCATCTCATCTAGGAAGAATAATCCTCC 23082 || || | ||| | || || | || |||||||| ||||||| ||| |||| || || Sbjct 1326 CAGTATAACTAAAGCCTCTGGTACCGAAGCATCCATTTCATCTAAGAAAAATATACCCCC 1385 Query 23083 ATTTGTAAATGCTTTATAAAACTGAGTTTCATGAAACTTACCATTTGCGTCAATAAATCC 23142 || ||||| |||| ||||||||||| || ||| | ||||| |||||||||||||| Sbjct 1386 CTTAGTAAAAGCTTGGTAAAACTGAGTCTCCTGATATGTACCAGAAGCGTCAATAAATCC 1445 Query 23143 TGTTAATTT 23151 |||||||| Sbjct 1446 AGTTAATTT 1454 >seq151743 Length=442 Score = 82.4 bits (90), Expect = 7e-11 Identities = 76/95 (80%), Gaps = 1/95 (1%) Strand=Plus/Plus Query 43634 TACCGTGCTAAATCAAC-CTAATAAGTTGTAAATGCCGAACGACTAAATTTCTAGATAAC 43692 ||||||||||||||| | | || || |||||||||| ||||||||||||||| | || | Sbjct 307 TACCGTGCTAAATCAGCTCGTATGAGCTGTAAATGCCTAACGACTAAATTTCTGGGTAGC 366 Query 43693 TTATTAAAAGGAATAAGTGAAAACTAGATAAGAAA 43727 | | ||| || | ||||| ||| |||||||||| Sbjct 367 TGGTAAAATGGTACTAGTGAGAACCAGATAAGAAA 401 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 452457966612960