Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Arabis_20nordmanniana_20[genbank_20GCA_5F001484925.1_202016-01-04]
267,228 sequences; 342,306,570 total letters
Query= NC_025420.1
Length=32975
Score E
Sequences producing significant alignments: (Bits) Value
seq183827 123 5e-24
seq206859 104 5e-18
seq232480 89.7 1e-13
>seq183827
Length=492
Score = 123 bits (136), Expect = 5e-24
Identities = 103/126 (82%), Gaps = 0/126 (0%)
Strand=Plus/Plus
Query 17302 AACATGTTGATTAATACCGCTAGTTCGGCAACTAGCGGAAGAACAGTGATTCCCGGAACT 17361
||| |||||||||||||| ||||||| | ||||| ||| ||||| |||||||||| ||
Sbjct 366 AACCTGTTGATTAATACCTCTAGTTCAGTAACTAATGGACAAACAGAGATTCCCGGAGCT 425
Query 17362 TTTAATGCTATAGCTGGTGCGTATAGTAGAACTGATAGTTATGAGCAAGTAATTGCTCCT 17421
| || ||||| ||||| || |||||||||||||| ||||||||||||| |||||||
Sbjct 426 AGTGCTGTTATAGATGGTGTATACAGTAGAACTGATAGCTATGAGCAAGTAACTGCTCCT 485
Query 17422 TCTTCT 17427
||||
Sbjct 486 ATTTCT 491
>seq206859
Length=448
Score = 104 bits (114), Expect = 5e-18
Identities = 87/107 (81%), Gaps = 0/107 (0%)
Strand=Plus/Plus
Query 17689 TTTAGTTTACAGAATTTTTATTACACTGAGGGAAGTCTATTTAGATTTAAAAATATGAAG 17748
|| ||||||||||||| | |||||||| || ||||||||||||||||| |||||| ||
Sbjct 2 TTCAGTTTACAGAATTATGATTACACTACTGGTAGTCTATTTAGATTTAAGAATATGCAG 61
Query 17749 CTGGAAAAAGGAAATATTGCCACCCCGTGGACACCTGCACCAGAAGA 17795
|||||||| || | |||||| || | ||||| || || || |||||
Sbjct 62 CTGGAAAAGGGTAGTATTGCAACAGCTTGGACGCCGGCTCCCGAAGA 108
>seq232480
Length=511
Score = 89.7 bits (98), Expect = 1e-13
Identities = 166/242 (69%), Gaps = 4/242 (2%)
Strand=Plus/Plus
Query 27771 TTGCTAAGATCCTCAAGCAAAACGGAATTAACATTGGCTCTATTAGATTTTTCGCTTGGT 27830
|||| ||| | |||| || ||||| || ||||||| | | | || ||||| |||
Sbjct 1 TTGCCAAGGTAATCAAACAGAACGGCGTTGACATTGGTGCCAAGCGGTTGTTCGCATGGC 60
Query 27831 TACGTGACAACGGTTATTTAATCAAGCGGCAAGGCAGTGACTACAATTCACCAACGCAGT 27890
||||||| | || ||||| ||||| ||| || ||||| || || || || ||
Sbjct 61 TACGTGAGCAAGGATATTTGATCAAACGGATTGGTGCCGACTATAACTCGCCGACACAAC 120
Query 27891 ATTCAATGGAGCGTGGCTGGTTTGAGGTAAAAGAAACAACGGTCAACTACCCAGACGGCC 27950
| ||||||| |||| ||| ||||| ||||| || || ||| || | |||||||
Sbjct 121 GCGCGATGGAGCTAGGCTTGTTCGAGGTCAAAGAGACGGCGATCAGTCACTCGGACGGCC 180
Query 27951 --GCACCCTTGTTAAGAAGACTCCGAAAGTTACTGGAAAAGGCCAGCAATACTTCGTAAA 28008
| | | ||| ||||||| || || || || || ||||||||||| || || | ||
Sbjct 181 ATGTAACA--GTTCAGAAGACCCCAAAGGTGACCGGCAAAGGCCAGCAGTATTTTATCAA 238
Query 28009 CA 28010
||
Sbjct 239 CA 240
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 105063935831832
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |