Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Arabis_20nordmanniana_20[genbank_20GCA_5F001484925.1_202016-01-04] 267,228 sequences; 342,306,570 total letters Query= NC_025420.1 Length=32975 Score E Sequences producing significant alignments: (Bits) Value seq183827 123 5e-24 seq206859 104 5e-18 seq232480 89.7 1e-13 >seq183827 Length=492 Score = 123 bits (136), Expect = 5e-24 Identities = 103/126 (82%), Gaps = 0/126 (0%) Strand=Plus/Plus Query 17302 AACATGTTGATTAATACCGCTAGTTCGGCAACTAGCGGAAGAACAGTGATTCCCGGAACT 17361 ||| |||||||||||||| ||||||| | ||||| ||| ||||| |||||||||| || Sbjct 366 AACCTGTTGATTAATACCTCTAGTTCAGTAACTAATGGACAAACAGAGATTCCCGGAGCT 425 Query 17362 TTTAATGCTATAGCTGGTGCGTATAGTAGAACTGATAGTTATGAGCAAGTAATTGCTCCT 17421 | || ||||| ||||| || |||||||||||||| ||||||||||||| ||||||| Sbjct 426 AGTGCTGTTATAGATGGTGTATACAGTAGAACTGATAGCTATGAGCAAGTAACTGCTCCT 485 Query 17422 TCTTCT 17427 |||| Sbjct 486 ATTTCT 491 >seq206859 Length=448 Score = 104 bits (114), Expect = 5e-18 Identities = 87/107 (81%), Gaps = 0/107 (0%) Strand=Plus/Plus Query 17689 TTTAGTTTACAGAATTTTTATTACACTGAGGGAAGTCTATTTAGATTTAAAAATATGAAG 17748 || ||||||||||||| | |||||||| || ||||||||||||||||| |||||| || Sbjct 2 TTCAGTTTACAGAATTATGATTACACTACTGGTAGTCTATTTAGATTTAAGAATATGCAG 61 Query 17749 CTGGAAAAAGGAAATATTGCCACCCCGTGGACACCTGCACCAGAAGA 17795 |||||||| || | |||||| || | ||||| || || || ||||| Sbjct 62 CTGGAAAAGGGTAGTATTGCAACAGCTTGGACGCCGGCTCCCGAAGA 108 >seq232480 Length=511 Score = 89.7 bits (98), Expect = 1e-13 Identities = 166/242 (69%), Gaps = 4/242 (2%) Strand=Plus/Plus Query 27771 TTGCTAAGATCCTCAAGCAAAACGGAATTAACATTGGCTCTATTAGATTTTTCGCTTGGT 27830 |||| ||| | |||| || ||||| || ||||||| | | | || ||||| ||| Sbjct 1 TTGCCAAGGTAATCAAACAGAACGGCGTTGACATTGGTGCCAAGCGGTTGTTCGCATGGC 60 Query 27831 TACGTGACAACGGTTATTTAATCAAGCGGCAAGGCAGTGACTACAATTCACCAACGCAGT 27890 ||||||| | || ||||| ||||| ||| || ||||| || || || || || Sbjct 61 TACGTGAGCAAGGATATTTGATCAAACGGATTGGTGCCGACTATAACTCGCCGACACAAC 120 Query 27891 ATTCAATGGAGCGTGGCTGGTTTGAGGTAAAAGAAACAACGGTCAACTACCCAGACGGCC 27950 | ||||||| |||| ||| ||||| ||||| || || ||| || | ||||||| Sbjct 121 GCGCGATGGAGCTAGGCTTGTTCGAGGTCAAAGAGACGGCGATCAGTCACTCGGACGGCC 180 Query 27951 --GCACCCTTGTTAAGAAGACTCCGAAAGTTACTGGAAAAGGCCAGCAATACTTCGTAAA 28008 | | | ||| ||||||| || || || || || ||||||||||| || || | || Sbjct 181 ATGTAACA--GTTCAGAAGACCCCAAAGGTGACCGGCAAAGGCCAGCAGTATTTTATCAA 238 Query 28009 CA 28010 || Sbjct 239 CA 240 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 105063935831832