Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Arabis_20nordmanniana_20[genbank_20GCA_5F001484925.1_202016-01-04]
267,228 sequences; 342,306,570 total letters
Query= NC_025424.1
Length=45648
Score E
Sequences producing significant alignments: (Bits) Value
seq255890 228 2e-55
seq158858 201 3e-47
seq123612 179 1e-40
>seq255890
Length=19928
Score = 228 bits (252), Expect = 2e-55
Identities = 258/338 (76%), Gaps = 21/338 (6%)
Strand=Plus/Minus
Query 4592 CTCACTTTCTATTAAAAGGATTATTTTATTAAGTTATGtttttttAA-CTGAAACCAAGT 4650
|||| ||||| |||||| ||||||||| || |||||| ||| |||| | |||| |
Sbjct 2258 CTCATTTTCTGTTAAAAAGATTATTTTGTTCAGTTATTTTTCATTAATCAGAAAAAATTG 2199
Query 4651 CTCCATGCCTCTTACGTCTTTCTCATAAATTGGCATTACATATATCTCTTCGTTTATTAA 4710
||||||| |||||| || |||| ||| |||||||||||| |||||||||| ||| ||||
Sbjct 2198 TTCCATGCTTCTTACATCCTTCTTATACATTGGCATTACAAATATCTCTTCATTTCTTAA 2139
Query 4711 CAGTTGGAATTCTACACATTGTTTTTCTCTGTTCCATCCGTAAGATGCCATAGGAACCAT 4770
|||||||| ||||||||| |||||||| ||||||| |||||| |||||||| || |||
Sbjct 2138 TAGTTGGAACTCTACACATCGTTTTTCTTTGTTCCACCCGTAACATGCCATA-GATACAT 2080
Query 4771 TTTAGGCTCCGCTTTTTCTGTCATTTTCTCTTcccccccTGAAT-AAAACTCAATATTCC 4829
||| || ||| | ||||| || |||| || ||| ||||| |||||| ||||||||
Sbjct 2079 TTTTGGTTCCTTTCTTTCT-TCTATTTCCCTCTACCCTTTGAATAAAAACTTAATATTCC 2021
Query 4830 GTCAATACTGTAGACAACCCATTAAGTTA-CTTTCTCCCAGTTCCCCCTTGGAGAACCAG 4888
|| |||| | | |||| ||| |||| |||||||| | | ||||| |
Sbjct 2020 GTTAATAATATGGACA---CAT--GGTTATCTTTCTCCGATT---CCCTT--------AT 1977
Query 4889 CCGGGCAGTTAGCTTTTGCTAGCTGCTCTTTTAGTTAT 4926
| |||||||||| |||||||||||| ||||| ||||
Sbjct 1976 ATGAGCAGTTAGCTATTGCTAGCTGCTTTTTTACTTAT 1939
>seq158858
Length=235449
Score = 201 bits (222), Expect = 3e-47
Identities = 225/301 (75%), Gaps = 0/301 (0%)
Strand=Plus/Minus
Query 25701 TCCGCTTTATAATATCGATCTCCACCACTTAGAGAGTAACAGATTTCAACTCCAATAGAT 25760
|| ||||| | ||||| |||||| || ||||||||||||||||| || ||||||
Sbjct 160298 TCAGCTTTTTCATATCTTGGACCACCAGATAATGAGTAACAGATTTCAACACCGATAGAT 160239
Query 25761 TTACGATTTCCGTTACCGCCACCATCACCGCAATGCCAAGCGTTACGCTCTAAAGGAATA 25820
|| || ||||||||||| ||||||||||| ||||||||||| ||||| || | ||||||
Sbjct 160238 TTTCGGTTTCCGTTACCACCACCATCACCACAATGCCAAGCATTACGATCAACCGGAATA 160179
Query 25821 CCTTGTACAGCTTCTTTATCGTCTACCGCAATATGAAACGATACTTGGTTATCATTACGA 25880
||||| | | |||| |||| ||||| || | || || || || | |||| ||| |
Sbjct 160178 CCTTGAATAACTTCGATATCATCTACTGCGAAGTGGAATGAAACCTCGTTAGTATTTCCG 160119
Query 25881 ATCATATAAGCCACTTCGTTATTTGCTGTAGCATCGTTATAAGTATTGTGGACAGTAATG 25940
||||| ||| || ||||| || || | ||||| |||||||| || || || ||||||
Sbjct 160118 ATCATGTAATTTACCTCGTTCTTAGCAGGCGCATCATTATAAGTGTTATGCACTGTAATG 160059
Query 25941 AATTCTGGATTCATTGTATAAGGGCACTTAGTACCATATTTGCTTGCATCAACTAAATTT 26000
| |||| ||||| | |||||| ||||| | |||||||||| | | || | ||||
Sbjct 160058 TACTCTGCTTTCATAGAATAAGGACACTTGATTGGGTATTTGCTTGTAGCCACAAGATTT 159999
Query 26001 T 26001
|
Sbjct 159998 T 159998
>seq123612
Length=52173
Score = 179 bits (198), Expect = 1e-40
Identities = 179/223 (80%), Gaps = 12/223 (5%)
Strand=Plus/Plus
Query 17581 AAGGAAATGCTATAATCCGCTTTGACTAACTGCTACGAAAGCTCATGCCATTGCTAACGT 17640
|| ||| ||| | |||| |||||| |||||||||||||||||||||| ||||||||||||
Sbjct 40248 AAAGAAGTGCCACAATCGGCTTTGGCTAACTGCTACGAAAGCTCATGTCATTGCTAACGT 40307
Query 17641 TTGCAGTTTATCATCCACAACTAGGG-CGACTCCCTAGATTGCG-GTACCATTCCGCAGC 17698
|||||||| |||||||||| ||||| |||||| ||||||||| ||| || || || |
Sbjct 40308 TTGCAGTTAATCATCCACAGTTAGGGTGGACTCCATAGATTGCGAGTA-AATGCCACACC 40366
Query 17699 CCTTAACAATTTGTTAGGGGCTTTTTTCATTTCTGTTCGACAAAATATGACAATATTATA 17758
|||||||||||||||||||||||||| | | | | |||||||||||||| | ||
Sbjct 40367 CCTTAACAATTTGTTAGGGGCTTTTT---TATACATCCAACAAAATATGACAAAA--ATG 40421
Query 17759 AT-TAAATG--TTTGCTATGATAAGCTCGGAAATCTTACATTT 17798
|| ||| || | || ||| || || ||||||||||||||
Sbjct 40422 ATGTAACTGAATCTGTTATTATGTTCT-AGAAATCTTACATTT 40463
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 145488845774960
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |