Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Arabis_20nordmanniana_20[genbank_20GCA_5F001484925.1_202016-01-04] 267,228 sequences; 342,306,570 total letters Query= NC_025424.1 Length=45648 Score E Sequences producing significant alignments: (Bits) Value seq255890 228 2e-55 seq158858 201 3e-47 seq123612 179 1e-40 >seq255890 Length=19928 Score = 228 bits (252), Expect = 2e-55 Identities = 258/338 (76%), Gaps = 21/338 (6%) Strand=Plus/Minus Query 4592 CTCACTTTCTATTAAAAGGATTATTTTATTAAGTTATGtttttttAA-CTGAAACCAAGT 4650 |||| ||||| |||||| ||||||||| || |||||| ||| |||| | |||| | Sbjct 2258 CTCATTTTCTGTTAAAAAGATTATTTTGTTCAGTTATTTTTCATTAATCAGAAAAAATTG 2199 Query 4651 CTCCATGCCTCTTACGTCTTTCTCATAAATTGGCATTACATATATCTCTTCGTTTATTAA 4710 ||||||| |||||| || |||| ||| |||||||||||| |||||||||| ||| |||| Sbjct 2198 TTCCATGCTTCTTACATCCTTCTTATACATTGGCATTACAAATATCTCTTCATTTCTTAA 2139 Query 4711 CAGTTGGAATTCTACACATTGTTTTTCTCTGTTCCATCCGTAAGATGCCATAGGAACCAT 4770 |||||||| ||||||||| |||||||| ||||||| |||||| |||||||| || ||| Sbjct 2138 TAGTTGGAACTCTACACATCGTTTTTCTTTGTTCCACCCGTAACATGCCATA-GATACAT 2080 Query 4771 TTTAGGCTCCGCTTTTTCTGTCATTTTCTCTTcccccccTGAAT-AAAACTCAATATTCC 4829 ||| || ||| | ||||| || |||| || ||| ||||| |||||| |||||||| Sbjct 2079 TTTTGGTTCCTTTCTTTCT-TCTATTTCCCTCTACCCTTTGAATAAAAACTTAATATTCC 2021 Query 4830 GTCAATACTGTAGACAACCCATTAAGTTA-CTTTCTCCCAGTTCCCCCTTGGAGAACCAG 4888 || |||| | | |||| ||| |||| |||||||| | | ||||| | Sbjct 2020 GTTAATAATATGGACA---CAT--GGTTATCTTTCTCCGATT---CCCTT--------AT 1977 Query 4889 CCGGGCAGTTAGCTTTTGCTAGCTGCTCTTTTAGTTAT 4926 | |||||||||| |||||||||||| ||||| |||| Sbjct 1976 ATGAGCAGTTAGCTATTGCTAGCTGCTTTTTTACTTAT 1939 >seq158858 Length=235449 Score = 201 bits (222), Expect = 3e-47 Identities = 225/301 (75%), Gaps = 0/301 (0%) Strand=Plus/Minus Query 25701 TCCGCTTTATAATATCGATCTCCACCACTTAGAGAGTAACAGATTTCAACTCCAATAGAT 25760 || ||||| | ||||| |||||| || ||||||||||||||||| || |||||| Sbjct 160298 TCAGCTTTTTCATATCTTGGACCACCAGATAATGAGTAACAGATTTCAACACCGATAGAT 160239 Query 25761 TTACGATTTCCGTTACCGCCACCATCACCGCAATGCCAAGCGTTACGCTCTAAAGGAATA 25820 || || ||||||||||| ||||||||||| ||||||||||| ||||| || | |||||| Sbjct 160238 TTTCGGTTTCCGTTACCACCACCATCACCACAATGCCAAGCATTACGATCAACCGGAATA 160179 Query 25821 CCTTGTACAGCTTCTTTATCGTCTACCGCAATATGAAACGATACTTGGTTATCATTACGA 25880 ||||| | | |||| |||| ||||| || | || || || || | |||| ||| | Sbjct 160178 CCTTGAATAACTTCGATATCATCTACTGCGAAGTGGAATGAAACCTCGTTAGTATTTCCG 160119 Query 25881 ATCATATAAGCCACTTCGTTATTTGCTGTAGCATCGTTATAAGTATTGTGGACAGTAATG 25940 ||||| ||| || ||||| || || | ||||| |||||||| || || || |||||| Sbjct 160118 ATCATGTAATTTACCTCGTTCTTAGCAGGCGCATCATTATAAGTGTTATGCACTGTAATG 160059 Query 25941 AATTCTGGATTCATTGTATAAGGGCACTTAGTACCATATTTGCTTGCATCAACTAAATTT 26000 | |||| ||||| | |||||| ||||| | |||||||||| | | || | |||| Sbjct 160058 TACTCTGCTTTCATAGAATAAGGACACTTGATTGGGTATTTGCTTGTAGCCACAAGATTT 159999 Query 26001 T 26001 | Sbjct 159998 T 159998 >seq123612 Length=52173 Score = 179 bits (198), Expect = 1e-40 Identities = 179/223 (80%), Gaps = 12/223 (5%) Strand=Plus/Plus Query 17581 AAGGAAATGCTATAATCCGCTTTGACTAACTGCTACGAAAGCTCATGCCATTGCTAACGT 17640 || ||| ||| | |||| |||||| |||||||||||||||||||||| |||||||||||| Sbjct 40248 AAAGAAGTGCCACAATCGGCTTTGGCTAACTGCTACGAAAGCTCATGTCATTGCTAACGT 40307 Query 17641 TTGCAGTTTATCATCCACAACTAGGG-CGACTCCCTAGATTGCG-GTACCATTCCGCAGC 17698 |||||||| |||||||||| ||||| |||||| ||||||||| ||| || || || | Sbjct 40308 TTGCAGTTAATCATCCACAGTTAGGGTGGACTCCATAGATTGCGAGTA-AATGCCACACC 40366 Query 17699 CCTTAACAATTTGTTAGGGGCTTTTTTCATTTCTGTTCGACAAAATATGACAATATTATA 17758 |||||||||||||||||||||||||| | | | | |||||||||||||| | || Sbjct 40367 CCTTAACAATTTGTTAGGGGCTTTTT---TATACATCCAACAAAATATGACAAAA--ATG 40421 Query 17759 AT-TAAATG--TTTGCTATGATAAGCTCGGAAATCTTACATTT 17798 || ||| || | || ||| || || |||||||||||||| Sbjct 40422 ATGTAACTGAATCTGTTATTATGTTCT-AGAAATCTTACATTT 40463 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 145488845774960