Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Arabis_20nordmanniana_20[genbank_20GCA_5F001484925.1_202016-01-04]
267,228 sequences; 342,306,570 total letters
Query= NC_025425.1
Length=163424
Score E
Sequences producing significant alignments: (Bits) Value
seq26767 158 1e-33
seq249645 123 3e-23
>seq26767
Length=1149
Score = 158 bits (174), Expect = 1e-33
Identities = 304/446 (68%), Gaps = 2/446 (0%)
Strand=Plus/Plus
Query 135351 CATCAGGTTATTAATCTGTACGCCGTAGTCAAGATGGCGAATGCGGTTATCTTCCACGCC 135410
||||| |||||||| ||||| | || |||| || || | | || ||||| | |||
Sbjct 33 CATCAATTTATTAATTTGTACTGCATAATCAACGTGACGTACTCTATTTTCTTCAATGCC 92
Query 135411 CTTATTGTTCTTTAACACAATCAGACTTTCAAACTCTAAATGCCACATTGGGTAATAGAG 135470
| |||| || ||||| || | | |||||||| || |||||||| ||||| ||| | |
Sbjct 93 CCTATTATTTTTTAAAACTAATAAACTTTCAATTTCAAAATGCCATATTGGATAAAATAT 152
Query 135471 AGTCGCCGCCCCGCCACGAATACCGCCTTGTGAGCATGACTTAACGGCAGTCTGAAAATG 135530
||| ||||| || || | || || ||||| || || || || || ||| | ||||||||
Sbjct 153 AGTTGCCGCTCCACCTCTAACTCCTCCTTGAGAACAGGATTTTACAGCACTTTGAAAATG 212
Query 135531 TTTCCAGAATGGGATAACGCCAGTATGACGAACTTCACCATGCCCGATCTTAGATCCTTC 135590
||| | || || ||| ||||||||| |||| |||| | || | ||| |
Sbjct 213 TTTATAAAAAGGAATACAACCAGTATGAAATGCTTCGCCATTTCTAATAGGACTACCTAC 272
Query 135591 CGCGCGAATCATGCCAGCGTTGATACCGATACCCGCACGCTTGCTAATATACTTGATGAT 135650
|| ||||| | ||||| || ||||| || || || || | || ||| || | ||
Sbjct 273 TGCACGAATTTTTCCAGCATTAATACCAATTCCTGCTCGTTGAGAAACATATTTTACAAT 332
Query 135651 TGCATTTGCTGTTTCGTTGATGCCCTGCA-ATGAGTCATCACTTTCAATCACCACACACG 135709
| | | | || |||| || | | || | ||||||| |||||| | ||||| |
Sbjct 333 AGAACTAGTAGTAGCGTTAATAGAATCTAGATTA-TCATCACATTCAATTAAAACACATG 391
Query 135710 AACTAAATTGGCGTGTTGGGGTACGCACACCAGCCATAATCGGAGTAGGCAGAGAGATTT 135769
| |||||||| || || || || | || |||| |||||| || || || | ||| ||||
Sbjct 392 AGCTAAATTGTCGAGTAGGAGTTCTAACTCCAGACATAATTGGTGTCGGTAAAGAAATTT 451
Query 135770 GCTTATTCGAAACAGCATTATAAAAA 135795
| | |||| ||||||||||||
Sbjct 452 TGAAAGTTGAAATGGCATTATAAAAA 477
>seq249645
Length=476466
Score = 123 bits (136), Expect = 3e-23
Identities = 282/417 (68%), Gaps = 17/417 (4%)
Strand=Plus/Minus
Query 135361 TTAATCTGTACGCCGTAGTCAAGATGGCGAATGCGGTTATCTTCCACGCCC---TTATTG 135417
|||| ||||||||||||||| | ||| || | ||||| ||||| || || |||||
Sbjct 264955 TTAA-CTGTACGCCGTAGTCCATATGACGGACACGGTTGTCTTCAACACCGCGGTTATTT 264897
Query 135418 TTCTTTAACAC-AATCAGACTTTCAAACTCTAAATGCCACATTGGGTAATAGAGAGTCGC 135476
|| || || ||| |||| ||| ||||||||||| | |||||| | | |||||
Sbjct 264896 TTGAGTACCAGTAAT--GACT--CAACTTCTAAATGCCATAGTGGGTAGAACAACGTCGC 264841
Query 135477 CGCCCCGCCACGAATACCGCCTTGTGAGCATGACTTAACGGCAGTCTGAAAATGTTTCCA 135536
|| |||||||| | || ||||||||||| | |||||||| || || || ||| |
Sbjct 264840 AGCACCGCCACGTACGCCACCTTGTGAGCAGCATTTAACGGCCGTTTGGAACAATTTATA 264781
Query 135537 GAATGGGATAACGCCAGTATGACGAACTTCACCATGCCCGATCTTAGATCCTTCC----G 135592
|| || ||| ||||||||| | ||||||| | || ||| || || |
Sbjct 264780 AAAAGGAATACAGCCAGTATGCTGTGCTTCACCGCCACGGA---TAG-GGCTACCAAGGG 264725
Query 135593 CGCGAATCATGCCAGCGTTGATACCGATACCCGCACGCTTGCTAATATACTTGATGATTG 135652
| || || || |||||||| |||||||| ||||||| | ||| | ||| |
Sbjct 264724 CACGGATACGACCTGCGTTGATGCCGATACCAGCACGCTGTGACACATAGCGTACGATGG 264665
Query 135653 CATTTGCTGTTTCGTTGATGCCCTGCAATGAGTCATCACTTTCAATCACCACACACGAAC 135712
| | | || ||||||| | || ||| ||| ||| || | || ||||| |
Sbjct 264664 CGCTAGTGGTGGCGTTGATAGAGTCTAAGCTATCACCACATTCGATTAAGACGCACGAGC 264605
Query 135713 TAAATTGGCGTGTTGGGGTACGCACACCAGCCATAATCGGAGTAGGCAGAGAGATTT 135769
|||| || || | ||| ||||||||||| | ||| || || || || || |||||||
Sbjct 264604 TAAACTGACGCGATGGCGTACGCACACCTGACATGATTGGCGTTGGTAGTGAGATTT 264548
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 521082368817920
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |