Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Arabis_20nordmanniana_20[genbank_20GCA_5F001484925.1_202016-01-04] 267,228 sequences; 342,306,570 total letters Query= NC_025425.1 Length=163424 Score E Sequences producing significant alignments: (Bits) Value seq26767 158 1e-33 seq249645 123 3e-23 >seq26767 Length=1149 Score = 158 bits (174), Expect = 1e-33 Identities = 304/446 (68%), Gaps = 2/446 (0%) Strand=Plus/Plus Query 135351 CATCAGGTTATTAATCTGTACGCCGTAGTCAAGATGGCGAATGCGGTTATCTTCCACGCC 135410 ||||| |||||||| ||||| | || |||| || || | | || ||||| | ||| Sbjct 33 CATCAATTTATTAATTTGTACTGCATAATCAACGTGACGTACTCTATTTTCTTCAATGCC 92 Query 135411 CTTATTGTTCTTTAACACAATCAGACTTTCAAACTCTAAATGCCACATTGGGTAATAGAG 135470 | |||| || ||||| || | | |||||||| || |||||||| ||||| ||| | | Sbjct 93 CCTATTATTTTTTAAAACTAATAAACTTTCAATTTCAAAATGCCATATTGGATAAAATAT 152 Query 135471 AGTCGCCGCCCCGCCACGAATACCGCCTTGTGAGCATGACTTAACGGCAGTCTGAAAATG 135530 ||| ||||| || || | || || ||||| || || || || || ||| | |||||||| Sbjct 153 AGTTGCCGCTCCACCTCTAACTCCTCCTTGAGAACAGGATTTTACAGCACTTTGAAAATG 212 Query 135531 TTTCCAGAATGGGATAACGCCAGTATGACGAACTTCACCATGCCCGATCTTAGATCCTTC 135590 ||| | || || ||| ||||||||| |||| |||| | || | ||| | Sbjct 213 TTTATAAAAAGGAATACAACCAGTATGAAATGCTTCGCCATTTCTAATAGGACTACCTAC 272 Query 135591 CGCGCGAATCATGCCAGCGTTGATACCGATACCCGCACGCTTGCTAATATACTTGATGAT 135650 || ||||| | ||||| || ||||| || || || || | || ||| || | || Sbjct 273 TGCACGAATTTTTCCAGCATTAATACCAATTCCTGCTCGTTGAGAAACATATTTTACAAT 332 Query 135651 TGCATTTGCTGTTTCGTTGATGCCCTGCA-ATGAGTCATCACTTTCAATCACCACACACG 135709 | | | | || |||| || | | || | ||||||| |||||| | ||||| | Sbjct 333 AGAACTAGTAGTAGCGTTAATAGAATCTAGATTA-TCATCACATTCAATTAAAACACATG 391 Query 135710 AACTAAATTGGCGTGTTGGGGTACGCACACCAGCCATAATCGGAGTAGGCAGAGAGATTT 135769 | |||||||| || || || || | || |||| |||||| || || || | ||| |||| Sbjct 392 AGCTAAATTGTCGAGTAGGAGTTCTAACTCCAGACATAATTGGTGTCGGTAAAGAAATTT 451 Query 135770 GCTTATTCGAAACAGCATTATAAAAA 135795 | | |||| |||||||||||| Sbjct 452 TGAAAGTTGAAATGGCATTATAAAAA 477 >seq249645 Length=476466 Score = 123 bits (136), Expect = 3e-23 Identities = 282/417 (68%), Gaps = 17/417 (4%) Strand=Plus/Minus Query 135361 TTAATCTGTACGCCGTAGTCAAGATGGCGAATGCGGTTATCTTCCACGCCC---TTATTG 135417 |||| ||||||||||||||| | ||| || | ||||| ||||| || || ||||| Sbjct 264955 TTAA-CTGTACGCCGTAGTCCATATGACGGACACGGTTGTCTTCAACACCGCGGTTATTT 264897 Query 135418 TTCTTTAACAC-AATCAGACTTTCAAACTCTAAATGCCACATTGGGTAATAGAGAGTCGC 135476 || || || ||| |||| ||| ||||||||||| | |||||| | | ||||| Sbjct 264896 TTGAGTACCAGTAAT--GACT--CAACTTCTAAATGCCATAGTGGGTAGAACAACGTCGC 264841 Query 135477 CGCCCCGCCACGAATACCGCCTTGTGAGCATGACTTAACGGCAGTCTGAAAATGTTTCCA 135536 || |||||||| | || ||||||||||| | |||||||| || || || ||| | Sbjct 264840 AGCACCGCCACGTACGCCACCTTGTGAGCAGCATTTAACGGCCGTTTGGAACAATTTATA 264781 Query 135537 GAATGGGATAACGCCAGTATGACGAACTTCACCATGCCCGATCTTAGATCCTTCC----G 135592 || || ||| ||||||||| | ||||||| | || ||| || || | Sbjct 264780 AAAAGGAATACAGCCAGTATGCTGTGCTTCACCGCCACGGA---TAG-GGCTACCAAGGG 264725 Query 135593 CGCGAATCATGCCAGCGTTGATACCGATACCCGCACGCTTGCTAATATACTTGATGATTG 135652 | || || || |||||||| |||||||| ||||||| | ||| | ||| | Sbjct 264724 CACGGATACGACCTGCGTTGATGCCGATACCAGCACGCTGTGACACATAGCGTACGATGG 264665 Query 135653 CATTTGCTGTTTCGTTGATGCCCTGCAATGAGTCATCACTTTCAATCACCACACACGAAC 135712 | | | || ||||||| | || ||| ||| ||| || | || ||||| | Sbjct 264664 CGCTAGTGGTGGCGTTGATAGAGTCTAAGCTATCACCACATTCGATTAAGACGCACGAGC 264605 Query 135713 TAAATTGGCGTGTTGGGGTACGCACACCAGCCATAATCGGAGTAGGCAGAGAGATTT 135769 |||| || || | ||| ||||||||||| | ||| || || || || || ||||||| Sbjct 264604 TAAACTGACGCGATGGCGTACGCACACCTGACATGATTGGCGTTGGTAGTGAGATTT 264548 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 521082368817920