Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Arabis_20nordmanniana_20[genbank_20GCA_5F001484925.1_202016-01-04] 267,228 sequences; 342,306,570 total letters Query= NC_025429.1 Length=156446 Score E Sequences producing significant alignments: (Bits) Value seq125822 96.9 3e-15 >seq125822 Length=25115 Score = 96.9 bits (106), Expect = 3e-15 Identities = 377/588 (64%), Gaps = 30/588 (5%) Strand=Plus/Plus Query 142220 GGAACGGCGGAACGAAAGCAATCTTCGGTCATCAGATGCGTTTCAATCTGGCTCAAGGCT 142279 ||||| |||||||| ||||| |||||||||||||| ||| | || | || | Sbjct 7772 GGAAC--CGGAACGACCAGTATCTTTGGTCATCAGATGCGGTTCCCTTTGCAGGATGGAT 7829 Query 142280 TTCCTCTTCTCTCCACGAAGAAGCTGCATCTGAAGTCGATCATCGTCGAACTCCTGTGGT 142339 |||| | | | ||||| || | ||| |||||||||| ||| || | | |||| Sbjct 7830 TTCCGATGGTGACGACGAAAAAATTACATATGAAGTCGATTATCCATGAGTTGATTTGGT 7889 Query 142340 TCCTCAAAGGCGATACGAACATCAAGTATCTTCACGATCACAACGTCAAGATCTGGGATG 142399 | || || || || ||||| |||||||| || || |||| ||| ||| | | Sbjct 7890 TTATCTCGGGTGACACCAACATTTCATATCTTCAAGAAAACGGCGTCCGGATTTGGAACG 7949 Query 142400 AATGGGCTGATGCCAATGGCAACCTCGGACCTGTCTACGGCAAGCAGTGGATGTCCTGGA 142459 | ||||| || | | || || |||||||| || || ||| |||||| || | Sbjct 7950 AGTGGGCGGACGAAGACGGGAATCTCGGACCGGTTTATGGCGCCCAGTGGCGTTCTTTCC 8009 Query 142460 CGAACCTCGTTGTCGCTGGAGATGACGTCACAGACGAACCGATCGATCAGATCCGCCGGA 142519 |||| | | || ||| ||| || | |||||| | |||| Sbjct 8010 CGAAACCGGATG--------GAT-----------CGA--CGGTTGATCAGTTG-GCCGAT 8047 Query 142520 -TCATTACTGACTTGAAGAAGTCTCCTCATTCTCGTCGTCACATCGTCACCGCGTGGAAC 142578 |||| | | |||| | ||| |||||||||||| || |||| || ||||| Sbjct 8048 GTCATCGAGCAAATTAAGACGAATCCGGATTCTCGTCGTCTGATTGTCAGTGCTTGGAAT 8107 Query 142579 CCTGCTGAAGTCGACGACATGGCACTTCCTCCGTGTCACATGATGTTCCAATTCCACGTC 142638 || | | || | || || ||||| | || || || ||| || |||| ||||| | ||| Sbjct 8108 CCCGGTCAATTAGAAGAGATGGCCTTGCCGCCCTGCCACCTGCTGTTTCAATTTTATGTC 8167 Query 142639 GACTCGAA-GAAGCGTCTGTCATGCCAGCTGTATCAGCGTTCGGCAGACTGGTTCCTCGG 142697 | |||| | | || |||| |||||||| || || || || || || || | || Sbjct 8168 G---CGAACGGAAAGT-TGTCGTGCCAGCTTTACCAACGGTCTGCCGATGTCTTTTTAGG 8223 Query 142698 CGTTCCGTTCAACATTGCTTCGTACGCGCTTCTCACACAGCTCATTGCTCGCGAATGCGG 142757 ||||| || || |||||||| ||||| | || || || | ||||||| | || Sbjct 8224 TGTTCCATTTAATATTGCTTCTTACGCTTTGCTGACGCACATGATTGCTCATGTCTGTAA 8283 Query 142758 TCTGGAACTCGGAGACTTCGTCCACACCTTCGGCAATTCGCACATCTA 142805 || ||| | || || ||||| || || || || || |||| ||||| Sbjct 8284 GCTTGAAGTTGGGGATTTCGTGCATACGTTAGGGGATGCGCATATCTA 8331 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 498827357497280