Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Arabis_20nordmanniana_20[genbank_20GCA_5F001484925.1_202016-01-04] 267,228 sequences; 342,306,570 total letters Query= NC_025437.1 Length=169062 Score E Sequences producing significant alignments: (Bits) Value seq26767 161 1e-34 seq249645 107 2e-18 seq244327 86.0 7e-12 seq190673 82.4 8e-11 >seq26767 Length=1149 Score = 161 bits (178), Expect = 1e-34 Identities = 279/404 (69%), Gaps = 6/404 (1%) Strand=Plus/Plus Query 142406 TTTTCATCCACGCCTTTGTTATTTTTCAGAACCAACAGGTTCTCTACTTCTAAGTGCCAC 142465 ||||| || | ||| | |||||||| | ||| || | | || | ||| || ||||| Sbjct 79 TTTTCTTCAATGCCCCTATTATTTTTTAAAACTAATAAACTTTCAATTTCAAAATGCCAT 138 Query 142466 ATCGGATAATACGCTGTAGCAGCACCACCACGAATACCACCTTGAGAACAAGATTTTACT 142525 || |||||| | || || || ||||| | || || ||||||||||| |||||||| Sbjct 139 ATTGGATAAAATATAGTTGCCGCTCCACCTCTAACTCCTCCTTGAGAACAGGATTTTACA 198 Query 142526 GCAGTTTGGAAATGTTTCCAGAATGGAATAACACCCGTATGTCGAACTTCACCCATACCA 142585 ||| |||| |||||||| | || |||||| ||| ||||| |||| || | | | Sbjct 199 GCACTTTGAAAATGTTTATAAAAAGGAATACAACCAGTATGAAATGCTTCGCCATTTCTA 258 Query 142586 ATCTTAGAACCTTCTGCACGAAGCATACCAACGTTGATACCGATACCAGCTCGTTTAGAA 142645 || | |||| ||||||||| | ||| | || ||||| || || ||||||| |||| Sbjct 259 ATAGGACTACCTACTGCACGAATTTTTCCAGCATTAATACCAATTCCTGCTCGTTGAGAA 318 Query 142646 ATATATTCAATAATTGATGCTGAAGTTTTGTTAATAGATTTTAACGAATCACCGGCTTCA 142705 | ||||| | ||| || | ||| ||||||||| | || |||| | |||| Sbjct 319 ACATATTTTACAATAGAACTAGTAGTAGCGTTAATAGAATCTAGATTATCATCACATTCA 378 Query 142706 ATAACTACAC---AACTAGAGAACTGGCGAGTTGGAGTACGAGCACCTGCCATAATTGGG 142762 || | |||| | ||| || || ||||| ||||| | | | || | ||||||||| Sbjct 379 ATTAAAACACATGAGCTA---AATTGTCGAGTAGGAGTTCTAACTCCAGACATAATTGGT 435 Query 142763 GTTGGCAATGAAACTTGATGAGTAGAAACGGCATCATAAAAACG 142806 || || || |||| || ||| |||| ||||| ||||||||| Sbjct 436 GTCGGTAAAGAAATTTTGAAAGTTGAAATGGCATTATAAAAACG 479 >seq249645 Length=476466 Score = 107 bits (118), Expect = 2e-18 Identities = 298/450 (66%), Gaps = 8/450 (2%) Strand=Plus/Minus Query 142382 CCGTAGTCCATATGTCTAATACGGTTTTCATCCACGCCTTTGTTATTTTTCAGAACCAAC 142441 |||||||||||||| | | |||||| || || || || ||||||||| || |||| Sbjct 264944 CCGTAGTCCATATGACGGACACGGTTGTCTTCAACACCGCGGTTATTTTTGAGTACCAGT 264885 Query 142442 AGGTTCTCTACTTCTAAGTGCCACATCGGATAATACGCTGTAGCAGCACCACCACGAATA 142501 | ||| |||||||| ||||| | || || || || |||||||| ||||| | Sbjct 264884 AATGACTCAACTTCTAAATGCCATAGTGGGTAGAACAACGTCGCAGCACCGCCACGTACG 264825 Query 142502 CCACCTTGAGAACAAGATTTTACTGCAGTTTGGAAATGTTTCCAGAATGGAATAACACCC 142561 |||||||| || || |||| || || |||||||| ||| | || |||||| || Sbjct 264824 CCACCTTGTGAGCAGCATTTAACGGCCGTTTGGAACAATTTATAAAAAGGAATACAGCCA 264765 Query 142562 GTATGTCGAACTTCACCCATACCAATCTTAGAACCTTCTGCACGAAGCATACCAACGTTG 142621 ||||| | ||||||| || || ||| ||||| | ||| ||||| Sbjct 264764 GTATGCTGTGCTTCACCGCCACGGATAGGGCTACCAAGGGCACGGATACGACCTGCGTTG 264705 Query 142622 ATACCGATACCAGCTCGTTTAGAAATATATTCAATAATTGATGCT-GAAGTTTTGTTAAT 142680 || ||||||||||| || | || | ||| | | || ||| | || ||| || Sbjct 264704 ATGCCGATACCAGCACGCTGTGACACATAGCGTACGA-TGGCGCTAGTGGTGGCGTTGAT 264646 Query 142681 AGATTTTAACGAATCACCGGCTTCAATAACTACACAACTAG-AGAACTGGCGAGTTGGAG 142739 ||| | ||| |||||| ||| || | || | || || ||||| || | ||| | Sbjct 264645 AGAGTCTAAGCTATCACCACATTCGATTAAGACGC-ACGAGCTAAACTGACGCGATGGCG 264587 Query 142740 TACGAGCACCTGCCATAATTGGGGTTGGCAATGAAACTTGATGAGT--AGAAACGGCATC 142797 |||| |||||| ||| ||||| ||||| | ||| | || ||| | || ||||| Sbjct 264586 TACGCACACCTGACATGATTGGCGTTGGTAGTGAGATTT--TGAATTCTGAGGTCGCATC 264529 Query 142798 ATAAAAACGAATAATATGTTTCAAACGGTC 142827 ||| || || | | || | ||||||||| Sbjct 264528 ATAGAAGCGTTTGACATAATGCAAACGGTC 264499 >seq244327 Length=1302 Score = 86.0 bits (94), Expect = 7e-12 Identities = 220/329 (67%), Gaps = 12/329 (4%) Strand=Plus/Plus Query 140645 AATCTCATCAAATACCTTCGATGGATCAGTATAAAGATTTCGCATGATATGAGTATATGA 140704 ||| |||||||||| |||||| | || || ||||| || ||||||||||| || Sbjct 803 AATATCATCAAATATTAAAGATGGAGAATTAACAATATTTCTAATAATATGAGTATAAGA 862 Query 140705 ACGAGAGTGAATGGTTTCACTGAATGTCCATGTAGCAACCCATGTATCTAATGAAGGGTC 140764 ||| |||||||| ||||| || | |||||| ||| ||| || |||||| || Sbjct 863 ACGTGAGTGAATAGTTTCCGAAAAAGACCATGTTTCAATCCAGGTTTCTAATTCCGGAAT 922 Query 140765 AGAAATCAGTGCCATAAGTACCGCAGATGGGGC-CCTGCCTTGGATAGAATCTAATAATG 140823 |||||| | || | || | | | | || | || ||||| ||||| |||||||||| Sbjct 923 AGAAATAATTGGTAGAA-AAGCAATGTTAGGACTTCTTCCTTGAATAGAGTCTAATAATG 981 Query 140824 ATTGATACTTAAGATTGTTTGTAAAGATATCCTGTTGAAACTGAGGAAGCTTATTGAACT 140883 |||||| || | ||| | ||| |||| | || | | ||| | || ||||| Sbjct 982 TTTGATATTTTAAATTACTAAGAAAAATATGTTTTTCATGTTCAGGTAAATT-TTGAAAA 1040 Query 140884 GCGCAGAGTCCAACATCAAG-----TTTACCTCTTCCGGGCGCCaaaaaaaCGACAATTG 140938 | | || | | || || | || ||||| || | ||||||||| || | ||| Sbjct 1041 TC---TATTCTATC-TCGAGAGAGATCTATTTCTTCAGGTCTCCAAAAAAAAGAGAGTTG 1096 Query 140939 CTTTTCAATAAGCTCTTCAAAAACTTTAT 140967 |||||||| | | |||||||| |||| Sbjct 1097 TTTTTCAATTAATTTTTCAAAAATATTAT 1125 >seq190673 Length=317 Score = 82.4 bits (90), Expect = 8e-11 Identities = 113/158 (72%), Gaps = 0/158 (0%) Strand=Plus/Plus Query 141430 AACTACTTGACGGAAATTACCTTCTTTAGATTCTTTAATACTTACTGGGCCACGAGGTGG 141489 |||||||||||| || | || ||||| ||| |||||||||| | || | ||||| Sbjct 1 AACTACTTGACGTAATATTCCATCTTTTGATACTTTAATACTAATAAAACCTCTTGGTGG 60 Query 141490 TTCAATACCATTTGTGCTATTTGAGACCTGGCTGCTTGATTCGCATGGCATGAGTGCAGA 141549 |||||| ||||| || ||| || | || | || ||| | ||||| |||||||| Sbjct 61 TTCAATTCCATTAGTTGCATTAGATATTTGAGAGGATGTTTCTGAAGGCATAAGTGCAGA 120 Query 141550 CAACGTTGAGTTACGAATTCCATGTTCTTTGAGTTCAG 141587 || |||||||| | | |||||||| ||| | || || Sbjct 121 TAATGTTGAGTTTCTTAATCCATGTTTTTTAATTTTAG 158 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 539063703559360