Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Arabis_20nordmanniana_20[genbank_20GCA_5F001484925.1_202016-01-04] 267,228 sequences; 342,306,570 total letters Query= NC_025440.1 Length=134369 Score E Sequences producing significant alignments: (Bits) Value seq78791 100 2e-16 seq151743 95.1 1e-14 >seq78791 Length=51567 Score = 100 bits (110), Expect = 2e-16 Identities = 204/295 (69%), Gaps = 16/295 (5%) Strand=Plus/Minus Query 78030 TCATAGTAGTCTTGTAGGTACCAGCCTTTTTTCTGCTTAACCTCGTAAGGGTCAAATAAA 78089 || ||| | |||||||| | ||| || | || | || || || || ||||| | Sbjct 46308 TCGTAGCAATCTTGTAGTTTCCATCCCATAAACTTTTCTACTTCATACGGACAAAATAGA 46249 Query 78090 TACCATTCCCCTCTATTCTCTACAGC-TTC-CATAAATAAATCAGGAATAGAAACAGAAG 78147 | ||| || || | |||||| |||| ||| |||||||||||| |||||| || ||| Sbjct 46248 TGCCACTCTCCG-TCTTCTCT-CAGCGTTCTCATAAATAAATCTGGAATA----CATAAG 46195 Query 78148 TAAA----AATGTCGTGAGCTCGTAAACGTTGGTCTCCGTTGTTTAGTCTTAAATCCAGA 78203 || ||| || ||||||||| || |||||||||| | |||| || || || Sbjct 46194 CCAAGGTGAATCTCATGAGCTCGTTCTTTTTCGTCTCCGTTGCTAAGTCGTAGGTCTAGG 46135 Query 78204 AAGGCTTCTATATCTTTGTGGAAAACGTCTAACGTTACAGTTATAGCACCTTTTCTTGCT 78263 ||||||| | ||||||||||| | ||| | || | || ||| || || ||| Sbjct 46134 AAGGCTTGCACGTCTTTGTGGAAGATGTCAAGATAAACCGCTACAGCTCCAGATC--GCT 46077 Query 78264 --CCTAATTGGTCTACACTAACAGCCGTGTTGTTCAACTGTTTAATCCAAGGTAC 78316 |||||||||||||| ||||| |||||||| | ||| |||||||||||| Sbjct 46076 TACCTAATTGGTCTACTGAGACAGCTGTGTTGTTTAGTTGTCGAATCCAAGGTAC 46022 >seq151743 Length=442 Score = 95.1 bits (104), Expect = 1e-14 Identities = 80/95 (84%), Gaps = 4/95 (4%) Strand=Plus/Minus Query 131282 TTTTCTTATCTAGTTCTCACTAACCCCATTTGGTTAGCTACCTAGAAATTTAGTCGTTAG 131341 ||||||||||| |||||||||| |||||| ||||||| ||||||||||||||||| Sbjct 402 TTTTCTTATCTGGTTCTCACTAGTACCATTTTACCAGCTACCCAGAAATTTAGTCGTTAG 343 Query 131342 GCATTTACAAGCT--TGCG-CCTGATTTAGCACGG 131373 |||||||| |||| | || |||||||||||||| Sbjct 342 GCATTTAC-AGCTCATACGAGCTGATTTAGCACGG 309 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 428456027247640