Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Arabis_20nordmanniana_20[genbank_20GCA_5F001484925.1_202016-01-04]
267,228 sequences; 342,306,570 total letters
Query= NC_025440.1
Length=134369
Score E
Sequences producing significant alignments: (Bits) Value
seq78791 100 2e-16
seq151743 95.1 1e-14
>seq78791
Length=51567
Score = 100 bits (110), Expect = 2e-16
Identities = 204/295 (69%), Gaps = 16/295 (5%)
Strand=Plus/Minus
Query 78030 TCATAGTAGTCTTGTAGGTACCAGCCTTTTTTCTGCTTAACCTCGTAAGGGTCAAATAAA 78089
|| ||| | |||||||| | ||| || | || | || || || || ||||| |
Sbjct 46308 TCGTAGCAATCTTGTAGTTTCCATCCCATAAACTTTTCTACTTCATACGGACAAAATAGA 46249
Query 78090 TACCATTCCCCTCTATTCTCTACAGC-TTC-CATAAATAAATCAGGAATAGAAACAGAAG 78147
| ||| || || | |||||| |||| ||| |||||||||||| |||||| || |||
Sbjct 46248 TGCCACTCTCCG-TCTTCTCT-CAGCGTTCTCATAAATAAATCTGGAATA----CATAAG 46195
Query 78148 TAAA----AATGTCGTGAGCTCGTAAACGTTGGTCTCCGTTGTTTAGTCTTAAATCCAGA 78203
|| ||| || ||||||||| || |||||||||| | |||| || || ||
Sbjct 46194 CCAAGGTGAATCTCATGAGCTCGTTCTTTTTCGTCTCCGTTGCTAAGTCGTAGGTCTAGG 46135
Query 78204 AAGGCTTCTATATCTTTGTGGAAAACGTCTAACGTTACAGTTATAGCACCTTTTCTTGCT 78263
||||||| | ||||||||||| | ||| | || | || ||| || || |||
Sbjct 46134 AAGGCTTGCACGTCTTTGTGGAAGATGTCAAGATAAACCGCTACAGCTCCAGATC--GCT 46077
Query 78264 --CCTAATTGGTCTACACTAACAGCCGTGTTGTTCAACTGTTTAATCCAAGGTAC 78316
|||||||||||||| ||||| |||||||| | ||| ||||||||||||
Sbjct 46076 TACCTAATTGGTCTACTGAGACAGCTGTGTTGTTTAGTTGTCGAATCCAAGGTAC 46022
>seq151743
Length=442
Score = 95.1 bits (104), Expect = 1e-14
Identities = 80/95 (84%), Gaps = 4/95 (4%)
Strand=Plus/Minus
Query 131282 TTTTCTTATCTAGTTCTCACTAACCCCATTTGGTTAGCTACCTAGAAATTTAGTCGTTAG 131341
||||||||||| |||||||||| |||||| ||||||| |||||||||||||||||
Sbjct 402 TTTTCTTATCTGGTTCTCACTAGTACCATTTTACCAGCTACCCAGAAATTTAGTCGTTAG 343
Query 131342 GCATTTACAAGCT--TGCG-CCTGATTTAGCACGG 131373
|||||||| |||| | || ||||||||||||||
Sbjct 342 GCATTTAC-AGCTCATACGAGCTGATTTAGCACGG 309
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 428456027247640
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |