Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Arabis_20nordmanniana_20[genbank_20GCA_5F001484925.1_202016-01-04] 267,228 sequences; 342,306,570 total letters Query= NC_025446.1 Length=157308 Score E Sequences producing significant alignments: (Bits) Value seq249645 95.1 1e-14 seq249537 87.8 2e-12 >seq249645 Length=476466 Score = 95.1 bits (104), Expect = 1e-14 Identities = 271/406 (67%), Gaps = 8/406 (2%) Strand=Plus/Plus Query 4039 CTTCCAACACCCATCATGTCCGGCGTTCGTACCCCAACCCGCCAATTCAGTTCTTGTGTT 4098 || ||||| || |||||||| || || ||||| ||| | || || || || || || || Sbjct 264556 CTACCAACGCCAATCATGTCAGGTGTGCGTACGCCATCGCGTCAGTTTAGCTCGTGCGTC 264615 Query 4099 CTTATCAAAACCGGTGACACTTTGGACTCAATCAATGCTACAGCCAAAAGTATTGTTGAT 4158 | ||| || ||||| | || ||||| ||||| || || | | || || Sbjct 264616 TTAATCGAATGTGGTGATAGCTTAGACTCTATCAACGCCACCACTAGCGCCATCGTACGC 264675 Query 4159 TATGTATCCAAACGCGCTGGGATCGGATTTGATGTCGGAGCAATTCGTGGCATCGGTAGC 4218 ||||| || | || ||||| ||||| | | | || || |||| | | |||||| Sbjct 264676 TATGTGTCACAGCGTGCTGGTATCGGCATCAACGCAGGTCGTATCCGTGCCCTTGGTAGC 264735 Query 4219 CCTATCCGAAAAGGTGAAATGGTGCACACAGGTCTG-GTTCC-TTTCATAAAATATCTGA 4276 |||||||| |||||| ||| || || ||| |||| ||| ||||| | | | Sbjct 264736 CCTATCCGTGGCGGTGAAGCACAGCATACTGG-CTGTATTCCTTTTTATAAATTGTTCCA 264794 Query 4277 CTGGGGCATTAAAGTCTTGCTCTCAAGGCGGTATTCGTGGCGGATCAGCAAC-TTGCTAT 4335 || | ||||| | ||||| ||||| || | |||||||| | || || ||| | | Sbjct 264795 AACGGCCGTTAAA-TGCTGCTCACAAGGTGGCGTACGTGGCGGTGCTGCGACGTTGTTCT 264853 Query 4336 ATCCCTATCTGGCATTATCAATTTGA-TGATGTTGTGGTCCTGAAGAACAACCGTGGTCT 4394 | ||| | ||||||| || |||| | || | |||| || || || ||||| ||| | Sbjct 264854 A-CCCACTATGGCATTTAGAAGTTGAGTCAT-TACTGGTACTCAAAAATAACCGCGGTGT 264911 Query 4395 TGAAGAGAACCGTGAACGCCGTATCGACTATGGTATTCAGATCAAC 4440 |||||| ||||||| || | ||| ||||| || | ||| | ||| Sbjct 264912 TGAAGACAACCGTGTCCGTCATATGGACTACGGCGTACAGTTAAAC 264957 >seq249537 Length=1253 Score = 87.8 bits (96), Expect = 2e-12 Identities = 58/63 (92%), Gaps = 1/63 (2%) Strand=Plus/Minus Query 76794 CCCTGGCTGGACTTGAACCAGCGACCAATCGATTATGAGTCGACTGCTCTAACCACTGAG 76853 ||||| ||||| |||||||||||||||| ||||||||||||| ||||||| ||||||||| Sbjct 65 CCCTG-CTGGATTTGAACCAGCGACCAAGCGATTATGAGTCGCCTGCTCTTACCACTGAG 7 Query 76854 CTA 76856 ||| Sbjct 6 CTA 4 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 501576543475840