Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Arabis_20nordmanniana_20[genbank_20GCA_5F001484925.1_202016-01-04] 267,228 sequences; 342,306,570 total letters Query= NC_025447.1 Length=348532 Score E Sequences producing significant alignments: (Bits) Value seq56932 138 3e-27 seq214244 127 5e-24 seq249645 107 4e-18 seq213831 86.0 1e-11 >seq56932 Length=160465 Score = 138 bits (152), Expect = 3e-27 Identities = 259/377 (69%), Gaps = 4/377 (1%) Strand=Plus/Plus Query 299029 TAAATGTTGGTGCATTGACTGCTGGTACTAAGTATCGTGGTGAATTTGAAGAACGCATCG 299088 || || ||||| | || | ||||||||||| ||||||||||| |||||| |||| || | Sbjct 88080 TAGATATTGGTTCTTTAATCGCTGGTACTAAATATCGTGGTGATTTTGAAAAACGTAT-G 88138 Query 299089 ACAAT--TTGCTAAAAGAACTAAAGAAACGTGAAAATACTATTGTTTTCATTGATGAAAT 299146 | ||| |||| | | ||| |||||| |||| | || | ||||||||||| || Sbjct 88139 A-AATCGCTGCTTGATGCACTTAAGAAAAAACCAAATGCCATCTTGTTCATTGATGAGAT 88197 Query 299147 TCATATTATGGTTGGGGCTGGTTCCGCAAGTAATGGTTCTATGGACATGAGCAATATGCT 299206 ||||| || |||| || || || ||| | || |||||| || ||| || | Sbjct 88198 CCATATGATTATTGGCGCAGGGTCGTCAATGAGCAGTAATATGGATGTGTCAAATCTGAT 88257 Query 299207 TAAGCCAGCACTTTCACGTGGTGAGATTCGTGTAATTGGTGCAACAACATATGATGAATA 299266 || ||||||||| || ||||||| | ||| |||||| ||||||| | | ||||| Sbjct 88258 CAAACCAGCACTTGCAAATGGTGAGCTGCGTTGTATTGGTTCAACAACCTTTACCGAATA 88317 Query 299267 TCGTAAAAATATCGAGAAAGATAGTGCATTAACTCGTCGTTTTATGAAAATTGACGTAGT 299326 |||| || | || |||||| |||||| | |||||||| |||||||| || Sbjct 88318 TCGTCAAGTGTTTGAAAAAGATCATGCATTGTCACGTCGTTTCCAAAAAATTGATGTGAA 88377 Query 299327 TGAGCCGACAATTGATGAAACTCGTGCAATTGTTAATGGTTTGAAACCAACGTATGAAAA 299386 || || | ||||||| | | | ||| | ||| | ||||| |||||| | Sbjct 88378 AGAACCAAGTGTTGATGACAGTATCGACATTTTGCGAGGTCTCAAACCGCGTTATGAAGA 88437 Query 299387 ATTCCATAATGTTGAGT 299403 ||| || |||||||||| Sbjct 88438 ATTTCACAATGTTGAGT 88454 >seq214244 Length=1107 Score = 127 bits (140), Expect = 5e-24 Identities = 187/265 (71%), Gaps = 0/265 (0%) Strand=Plus/Minus Query 279293 TGGAACGTTGGTGAGCTTGATGATATGACGTTACCACCTTGTCATAGCTTTGTGCAATTT 279352 ||||| ||||| || || | | |||| |||||||||||||||| || | || ||| Sbjct 373 TGGAATGTTGGAGAAATTAACAAAATGAAATTACCACCTTGTCATATATTATTTCAGTTT 314 Query 279353 TGTGTAGTGCAAGGAAAACTAAGCTGTATTCTGCATCAACGCTCCGCTGATCTATTTTTA 279412 | ||| | | |||| |||| ||| || | ||||| || |||| ||||| | Sbjct 313 TATGTTTTTAACAAAAAATTAAGTTGTCAACTTTACCAACGTTCTTGTGATGTATTTCTT 254 Query 279413 GGAGTTCCATTTAATATCAGTAGTTACTCACTACTAACTCATATGATTGCACAAATTACT 279472 ||| | || |||||||| |||||| || |||| | ||||||||| |||||| | Sbjct 253 GGATTACCTTTTAATATAGCTAGTTATGCAATACTTATTCATATGATAGCACAACAATGT 194 Query 279473 GGTTTAGATGTTGGTGAATTTATTTGGAATGGTGGTGATTGTCACATTTATAAAAACCAC 279532 | |||||| ||||| |||||| | |||| || |||||| || | ||||| || ||| Sbjct 193 GATTTAGAAGTTGGAGAATTTTTATGGACAGGAGGTGATGTCCATCTATATAATAATCAC 134 Query 279533 GTTGAACAAGTAAAAGAACAACTAC 279557 ||||| || |||| ||||| ||| Sbjct 133 ATTGAATTAGCAAAAAAACAAGTAC 109 >seq249645 Length=476466 Score = 107 bits (118), Expect = 4e-18 Identities = 278/417 (67%), Gaps = 20/417 (5%) Strand=Plus/Plus Query 24268 CTTCCAACACCTATTATGGCAGGTCTACGTACTAACACACGTCAGTTTAGTTCTTGTGTA 24327 || ||||| || || ||| ||||| | ||||| | ||||||||||| || || || Sbjct 264556 CTACCAACGCCAATCATGTCAGGTGTGCGTACGCCATCGCGTCAGTTTAGCTCGTGCGTC 264615 Query 24328 GTACT-GAACGTTGGTGATAGTTTAGATAGTATTGGTTCATCAAATCACGCCATTCTACG 24386 || | ||| | ||||||||| ||||| ||| | | | | |||||| |||| Sbjct 264616 TTAATCGAATG-TGGTGATAGCTTAGACTCTATCAACGCCACCACTAGCGCCATCGTACG 264674 Query 24387 CTATATCTCACGTAAAGCTGGACTAGGTATTAATATGGGCCGTATTCGTGCTCTAG---A 24443 |||| | |||| ||||| | || || || || ||||| ||||| || | Sbjct 264675 CTATGTGTCACAGCGTGCTGGTATCGGCATCAACGCAGGTCGTATCCGTGCCCTTGGTAG 264734 Query 24444 CTCTGAGATTCGTTCAGGTGATGCAGTACATACTGGGTTGATTCCTTTTATCGCAGCAAC 24503 | || || ||| ||||| ||| |||||||| | ||||||||| | || Sbjct 264735 CCCT---ATCCGTGGCGGTGAAGCACAGCATACTGGCTGTATTCCTTTT----TATAAAT 264787 Query 24504 TGCT----AAGACCGTTAAAAGCTGCTCACAGGGTGGTGTGCGTGGTGGTGCAGCAAC-- 24557 || | | | |||||||| |||||||||| ||||| || ||||| ||||| || || Sbjct 264788 TGTTCCAAACGGCCGTTAAATGCTGCTCACAAGGTGGCGTACGTGGCGGTGCTGCGACGT 264847 Query 24558 TGTTCACTTCCCATTGTGGCATTTGGAGTTTGATAACCTAGTAGTACTTAAAAATAACAA 24617 |||| || |||| | |||||||| || |||| || | ||||| ||||||||| Sbjct 264848 TGTT--CTACCCACTATGGCATTTAGAAGTTGAGTCATTACTGGTACTCAAAAATAACCG 264905 Query 24618 AGGTACAGAGTTTAACCGTGTACGTCAACTAGACTATTGTTTCCAAGTAAACAAAAC 24674 ||| || |||||||| ||||| | ||||| | | || |||||||||| Sbjct 264906 CGGTGTTGAAGACAACCGTGTCCGTCATATGGACTACGGCGTACAGTTAAACAAAAC 264962 >seq213831 Length=112690 Score = 86.0 bits (94), Expect = 1e-11 Identities = 75/92 (82%), Gaps = 1/92 (1%) Strand=Plus/Plus Query 73491 GGTGAAGTGGCAGAGTGGTTTAATGCAACGGTCTTGAAAACCGTCGAGGG-TGAAAGTCC 73549 || || ||||||||| |||| |||||| ||||||||||||||| | |||| | | || || Sbjct 15416 GGAGACGTGGCAGAGCGGTTGAATGCACCGGTCTTGAAAACCGGCAAGGGTTCATAGCCC 15475 Query 73550 TCCGTGAGTTCAAATCTCACCTTCACCGCCAA 73581 | || |||||| |||||| || || ||||||| Sbjct 15476 TTCGAGAGTTCGAATCTCTCCGTCTCCGCCAA 15507 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1111353011329132