Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Arabis_20nordmanniana_20[genbank_20GCA_5F001484925.1_202016-01-04]
267,228 sequences; 342,306,570 total letters
Query= NC_025449.1
Length=166783
Score E
Sequences producing significant alignments: (Bits) Value
seq26767 214 2e-50
seq249645 107 2e-18
seq127984 96.9 4e-15
seq252826 84.2 2e-11
>seq26767
Length=1149
Score = 214 bits (236), Expect = 2e-50
Identities = 318/450 (71%), Gaps = 6/450 (1%)
Strand=Plus/Plus
Query 138608 CATCAAATCATTCAGCTGAACACCATAATCCATATGACGAATGCGGTTTTCTTCTACGCC 138667
|||||| | ||| | || || ||||||| | ||||| | | |||||||| | |||
Sbjct 33 CATCAATTTATTAATTTGTACTGCATAATCAACGTGACGTACTCTATTTTCTTCAATGCC 92
Query 138668 TTTGTTATTTTTCAAAACGAGAAGATTTTCAACTTCCAAATGCCAAATAGGATAATAAGC 138727
| |||||||| ||||| | | | |||||| ||| |||||||| || |||||| |
Sbjct 93 CCTATTATTTTTTAAAACTAATAAACTTTCAATTTCAAAATGCCATATTGGATAAAATAT 152
Query 138728 AGTAGCAGCGCCGCCACGAATTCCACCCTGTGAACATGATTTAACTGCAGTCTGAAAATG 138787
||| || || || || | || ||| || || ||||| ||||| || ||| | ||||||||
Sbjct 153 AGTTGCCGCTCCACCTCTAACTCCTCCTTGAGAACAGGATTTTACAGCACTTTGAAAATG 212
Query 138788 TTTCCAAAAAGGAATAACACCAGTATGACGTACTTCACCCATGCCAATCTTAGAACCTTC 138847
||| ||||||||||| |||||||||| | |||| || | | ||| | |||| |
Sbjct 213 TTTATAAAAAGGAATACAACCAGTATGAAATGCTTCGCCATTTCTAATAGGACTACCTAC 272
Query 138848 AGCACGAATCATACCAACGTTAATACCAATTCCAGCGCGTTTAGAGATATATTCAACAAT 138907
|||||||| | ||| | |||||||||||||| || |||| ||| | ||||| |||||
Sbjct 273 TGCACGAATTTTTCCAGCATTAATACCAATTCCTGCTCGTTGAGAAACATATTTTACAAT 332
Query 138908 TGA---AGCGGAAGCCTTATTGATAGACTTCAGCGAATCACCTGCCTCAATAACAACGCA 138964
|| || | ||| ||| ||||| | || |||| | ||||| | ||| ||
Sbjct 333 AGAACTAGTAGTAGCGTTA---ATAGAATCTAGATTATCATCACATTCAATTAAAACACA 389
Query 138965 TGAACTGAACTGTCGAGTCGGAGTACGACAACCAGCCATAATAGGAGTTGGCAATGAAAT 139024
||| || || |||||||| ||||| | | |||| |||||| || || || || |||||
Sbjct 390 TGAGCTAAATTGTCGAGTAGGAGTTCTAACTCCAGACATAATTGGTGTCGGTAAAGAAAT 449
Query 139025 CTGTCGAGTAGATACTGCTTCATAAAAACG 139054
| ||| || | || | |||||||||
Sbjct 450 TTTGAAAGTTGAAATGGCATTATAAAAACG 479
>seq249645
Length=476466
Score = 107 bits (118), Expect = 2e-18
Identities = 146/204 (72%), Gaps = 0/204 (0%)
Strand=Plus/Minus
Query 138623 CTGAACACCATAATCCATATGACGAATGCGGTTTTCTTCTACGCCTTTGTTATTTTTCAA 138682
||| || || || ||||||||||| | ||||| ||||| || || ||||||||| |
Sbjct 264951 CTGTACGCCGTAGTCCATATGACGGACACGGTTGTCTTCAACACCGCGGTTATTTTTGAG 264892
Query 138683 AACGAGAAGATTTTCAACTTCCAAATGCCAAATAGGATAATAAGCAGTAGCAGCGCCGCC 138742
|| || | |||||||| |||||||| | || || | || ||||| |||||
Sbjct 264891 TACCAGTAATGACTCAACTTCTAAATGCCATAGTGGGTAGAACAACGTCGCAGCACCGCC 264832
Query 138743 ACGAATTCCACCCTGTGAACATGATTTAACTGCAGTCTGAAAATGTTTCCAAAAAGGAAT 138802
||| | ||||| ||||| || ||||||| || || || || ||| ||||||||||
Sbjct 264831 ACGTACGCCACCTTGTGAGCAGCATTTAACGGCCGTTTGGAACAATTTATAAAAAGGAAT 264772
Query 138803 AACACCAGTATGACGTACTTCACC 138826
| |||||||| || |||||||
Sbjct 264771 ACAGCCAGTATGCTGTGCTTCACC 264748
Score = 84.2 bits (92), Expect = 2e-11
Identities = 70/86 (81%), Gaps = 0/86 (0%)
Strand=Plus/Minus
Query 137667 TCAATATTGGGCACGACTTGATTAAAGGAGCCCTCTTTTGATTCTTTAACAGAGACTGGT 137726
||||| | ||||||||||| || ||| ||| ||||||||| |||| | |||||| |
Sbjct 265916 TCAATCTCAGGCACGACTTGCTTTAAGATGCCATCTTTTGATGCTTTGATAGAGACCAGA 265857
Query 137727 CCACGTGGAGGCTCGATACCGTTTGT 137752
|||||||| |||||||||||||| ||
Sbjct 265856 CCACGTGGTGGCTCGATACCGTTGGT 265831
>seq127984
Length=21361
Score = 96.9 bits (106), Expect = 4e-15
Identities = 73/86 (85%), Gaps = 0/86 (0%)
Strand=Plus/Minus
Query 69573 GTCATAAATTGGAGCGGATAATGAGAATCGAACTCACATCATCAGATTGGAAGTCTGAGG 69632
||||||||||||||||| | | ||||||||||||| ||||||||| ||||||| ||||||
Sbjct 19919 GTCATAAATTGGAGCGGGTGAAGAGAATCGAACTCTCATCATCAGCTTGGAAGGCTGAGG 19860
Query 69633 TAATACCATTATACGATATCCGCAAA 69658
| ||||| || || | | |||||||
Sbjct 19859 TTTTACCACTAAACTACACCCGCAAA 19834
>seq252826
Length=193385
Score = 84.2 bits (92), Expect = 2e-11
Identities = 64/76 (84%), Gaps = 0/76 (0%)
Strand=Plus/Minus
Query 68750 TGGTGCTGATTGACGGAATCGAACCGCCGACCTTCTCATTACAAGTGAGTTGCTCTACCT 68809
|||||| || || ||| ||||||| | |||||| || ||||||||| ||||||||||||
Sbjct 192022 TGGTGCCGACTGCCGGGATCGAACTGGCGACCTACTGATTACAAGTCAGTTGCTCTACCA 191963
Query 68810 ACTGAGCTAAATCAGC 68825
|||||||||| || ||
Sbjct 191962 ACTGAGCTAAGTCGGC 191947
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 531795264063840
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |