Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Arabis_20nordmanniana_20[genbank_20GCA_5F001484925.1_202016-01-04]
267,228 sequences; 342,306,570 total letters
Query= NC_025464.1
Length=44147
Score E
Sequences producing significant alignments: (Bits) Value
seq28607 627 2e-175
seq218717 136 1e-27
>seq28607
Length=83266
Score = 627 bits (694), Expect = 2e-175
Identities = 732/981 (75%), Gaps = 8/981 (1%)
Strand=Plus/Minus
Query 18724 TTTTGTGACTGGGTAACCAGTACAGATAACCGTCTTTATATCGGCTGGTTTGGAACACTG 18783
|| ||| ||||| ||||||| || || || |||||||| || || |||||||| ||
Sbjct 1502 TTCTGTAACTGGATAACCAGCACTGAAAATCGTCTTTACATTGGATGGTTTGGTGTTTTG 1443
Query 18784 ATGATTCCGTGTCTCCTTG-CAGCTACTATTTGTTTCATTATTGCCTTCATTGCTGCACC 18842
||||| || | || ||| | || ||| ||| ||||| || ||||||||||| ||
Sbjct 1442 ATGATCCC-TACCTTATTGACCGCAACTTCCGTTTTTATTATCGCATTCATTGCTGCTCC 1384
Query 18843 TCCTGTAGACATTGATGGCATCCGCGAGCCTGTTGCAGGCAGTCTTCTTTATGGAAACAA 18902
||| ||||| |||||||| || || || |||||| | || ||||||||| ||||||||
Sbjct 1383 TCCAGTAGATATTGATGGTATTCGTGAACCTGTTTCTGGATCTCTTCTTTACGGAAACAA 1324
Query 18903 CATCATATCGGGAGCCGTCGTTCCGAG--CAGCAATGCCATCGGACTACACTTCTACCCA 18960
|| || || || ||| | |||| | | ||| || || || | || || |||||
Sbjct 1323 TATTATTTCAGGTGCCATTATTCCTACTTCTGCA--GCTATTGGTTTGCATTTTTACCCG 1266
Query 18961 ATTTGGGAAGCTAATTCACTTGATGAATGGCTCTACAACGGGGGACCGTTCCAACTTGTG 19020
|| ||||||||| || ||||||||||||| |||||||| || || | |||| |
Sbjct 1265 ATCTGGGAAGCTGCATCCGTTGATGAATGGCTATACAACGGCGGTCCTTATGAACTAATT 1206
Query 19021 GTCTTCCACTTCCTCATTGGCGTCTATGCTTACATGGGACGCGAGTGGGAACTTAGCTAT 19080
|| | ||||| | |||| || | ||| ||||| || |||||||||||||| |
Sbjct 1205 GTTCTACACTTTTTACTTGGTGTAGCTTGTTATATGGGTCGTGAGTGGGAACTTAGTTTC 1146
Query 19081 CGACTAGGGATGCGCCCTTGGATTTGTGTTGCCTACTCAGCTCCTGTTGCCGCAGCCTCT 19140
|| || || ||||| ||||||||| |||||| || |||||||||||||| || || ||
Sbjct 1145 CGTCTGGGTATGCGTCCTTGGATTGCTGTTGCATATTCAGCTCCTGTTGCAGCTGCAACT 1086
Query 19141 GCGGTCTTCCTTGTCTATCCATTTGGTCAAGGTTCCTTTAGCGACGCTATGCCTTTGGGT 19200
|| || ||| | |||| ||| |||||||||| ||| || | ||||||| | ||
Sbjct 1085 GCTGTTTTCTTGATCTACCCAATTGGTCAAGGAAGTTTTTCTGATGGTATGCCTCTAGGA 1026
Query 19201 ATTAGTGGTACGTTCAACTACATGCTTGTATTCCAGGCTGAACATAACATCCTCATGCAC 19260
|| |||||| ||||||| ||| |||||||||||||||| || ||||| || ||||||
Sbjct 1025 ATCTCTGGTACTTTCAACTTTATGATTGTATTCCAGGCTGAGCACAACATTCTTATGCAC 966
Query 19261 CCGTTCCACATGCTCGGTGTCGCTGGTGTGTTCGGCGGGTCACTATTTAGTGCGATGCAC 19320
|| || |||||| | ||||| |||||||| |||||||| || ||||||||||| |||||
Sbjct 965 CCATTTCACATGTTAGGTGTAGCTGGTGTATTCGGCGGCTCCCTATTTAGTGCTATGCAT 906
Query 19321 GGTTCGCTTGTTACGTCCTCGCTTG-TGCGTGAAACTACTGAAGAGGTATCTCAGAACTA 19379
||||| |||| || | || | ||| | | ||||| || ||| | | |||| || |
Sbjct 905 GGTTC-CTTGGTAACTTCTAGTTTGATCAGGGAAACCACAGAAAATGAATCTGCTAATGA 847
Query 19380 TGGCTACAAGTTTGGGCAAGAAGAAGAGACTTATAACATTGTTGCTGCTCATGGGTATTT 19439
|| ||||| || || ||||||||||| ||||| |||||||| ||||||||||| |||||
Sbjct 846 AGGTTACAAATTCGGACAAGAAGAAGAAACTTACAACATTGTAGCTGCTCATGGTTATTT 787
Query 19440 TGGTCGGCTTATTTTCCAGTACGCATCCTTCAACAATAGCCGTTCTCTACATTTCTTTTT 19499
||| || | || ||||| || || ||||||||| |||||| |||||||||| ||
Sbjct 786 TGGCCGATTGATCTTCCAATATGCTAGTTTCAACAATTCTCGTTCTTTACATTTCTTCTT 727
Query 19500 GGCTGCTTGGCCTGTGGTTGGCATTTGGTTTGCCGCCCTTGGGGTAAGCACCATGGCATT 19559
|| |||||||| || || || ||||||||| | || | || | ||||||||||| ||
Sbjct 726 AGCGGCTTGGCCGGTAGTAGGTATTTGGTTTACTGCTTTAGGTATTAGCACCATGGCTTT 667
Query 19560 CAACTTGAATGGCTTTAACTTTAACCAGTCCCTTCTTGACAACAATGGTCGTGTCATTGA 19619
|||| | ||||| || || || ||||| || | |||| | | || ||||| ||| |
Sbjct 666 CAACCTAAATGGTTTCAATTTCAACCAATCAGTAGTTGATAGTCAAGGACGTGTTATTAA 607
Query 19620 TACTTGGGCTGACATTCTCAATCGTGCTAACCTCGGCTTTGAGGTAATGCACGAACGTAA 19679
|||||||||||| ||| | || ||||||||||| || | || || ||||| ||||||||
Sbjct 606 TACTTGGGCTGATATTATTAACCGTGCTAACCTTGGTATGGAAGTTATGCATGAACGTAA 547
Query 19680 TGCTCATAACTTCCCACTTGA 19700
|||||| |||||||| || ||
Sbjct 546 TGCTCACAACTTCCCTCTAGA 526
>seq218717
Length=448
Score = 136 bits (150), Expect = 1e-27
Identities = 166/224 (74%), Gaps = 7/224 (3%)
Strand=Plus/Minus
Query 19050 TTACATGGGACGCGAGTGGGAACTTAGCTATCGACTAGGGATGCGCCCTTGGATTTGTGT 19109
||| ||| | || |||||||||||||| | | || || ||||| ||||||||| |||
Sbjct 227 TTATATGAGTCGTGAGTGGGAACTTAGTTTATGTCTGGGTATGCGTCCTTGGATTGTTGT 168
Query 19110 TGCCTACTCAGCTCCTGTT-GCCGCAGCCTCTGCGGTCTTCCTTGTCTATCCATTTGGTC 19168
||| || |||||||||||| || || || || || ||| | | |||||| ||||||
Sbjct 167 TGCATATTCAGCTCCTGTTTGCAGCTGCTATTGTTGTTTTCTTGATTTATCCAATTGGTC 108
Query 19169 AAGG---TTCCTTTAGCGACGCTATGCCTTTGGGTATTAGTGGTACGTTCAACTACATGC 19225
|||| || |||| | | ||||||| | || || | |||| ||||||| ||
Sbjct 107 AAGGAAGTTTTTTTA---ATGGTATGCCTCTAGGAATCTCTTGTACTTTCAACTTTATTA 51
Query 19226 TTGTATTCCAGGCTGAACATAACATCCTCATGCACCCGTTCCAC 19269
|||||||||||||||| || ||||| || |||||||| || |||
Sbjct 50 TTGTATTCCAGGCTGAGCACAACATTCTTATGCACCCATTTCAC 7
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 140700887925624
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |