Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Arabis_20nordmanniana_20[genbank_20GCA_5F001484925.1_202016-01-04] 267,228 sequences; 342,306,570 total letters Query= NC_025829.1 Length=164999 Score E Sequences producing significant alignments: (Bits) Value seq26767 199 4e-46 seq249645 131 2e-25 seq127984 86.0 7e-12 seq252826 84.2 2e-11 >seq26767 Length=1149 Score = 199 bits (220), Expect = 4e-46 Identities = 313/444 (70%), Gaps = 12/444 (3%) Strand=Plus/Plus Query 143814 ATTCAGTTGAACGCCATAATCCATATGACGGATACGGTTTTCTTCTACACCTTTGTTATT 143873 ||| | ||| || ||||||| | ||||| | | |||||||| | || | ||||| Sbjct 42 ATTAATTTGTACTGCATAATCAACGTGACGTACTCTATTTTCTTCAATGCCCCTATTATT 101 Query 143874 TTTCAAAACGAGAAGATTTTCAACTTCCAAATGCCAAATAGGATAATAAGCAGTAGCAGC 143933 ||| ||||| | | | |||||| ||| |||||||| || |||||| | ||| || || Sbjct 102 TTTTAAAACTAATAAACTTTCAATTTCAAAATGCCATATTGGATAAAATATAGTTGCCGC 161 Query 143934 GCCGCCACGAATTCCACCCTGTGAACATGATTTAACTGCAGTCTGAAAATGTTTCCAAAA 143993 || || | || ||| || || ||||| ||||| || ||| | ||||||||||| |||| Sbjct 162 TCCACCTCTAACTCCTCCTTGAGAACAGGATTTTACAGCACTTTGAAAATGTTTATAAAA 221 Query 143994 AGGAATAACACCAGTATGACGCACTTCACCCATTCCAATCTTAGAACCTTCGGCACGAAT 144053 ||||||| |||||||||| |||| || ||| ||| | |||| | |||||||| Sbjct 222 AGGAATACAACCAGTATGAAATGCTTCGCCATTTCTAATAGGACTACCTACTGCACGAAT 281 Query 144054 CATACCAACGTTAATACCAATTCCAGCGCGTTTGGAGATATATTCAACAATTGA---AGC 144110 | ||| | |||||||||||||| || |||| || | ||||| ||||| || || Sbjct 282 TTTTCCAGCATTAATACCAATTCCTGCTCGTTGAGAAACATATTTTACAATAGAACTAGT 341 Query 144111 AGAAGCCTTATTGATAGACTTTA-ATGA--ATCACCTGCCTCAATAACAACGCATGAACT 144167 || ||| ||| ||||| | || || | ||||| | ||||| | ||| ||||| || Sbjct 342 AGTAGCGTTA---ATAGAATCTAGATTATCATCACAT---TCAATTAAAACACATGAGCT 395 Query 144168 AAACTGCCGAGTTGGAGTACGGCAACCAGCCATAATAGGGGTTGGCAGTGAAATCTGTCG 144227 ||| || ||||| ||||| | |||| |||||| || || || | ||||| | Sbjct 396 AAATTGTCGAGTAGGAGTTCTAACTCCAGACATAATTGGTGTCGGTAAAGAAATTTTGAA 455 Query 144228 AGTAGATACTGCTTCATAAAAACG 144251 ||| || | || | ||||||||| Sbjct 456 AGTTGAAATGGCATTATAAAAACG 479 >seq249645 Length=476466 Score = 131 bits (144), Expect = 2e-25 Identities = 272/404 (67%), Gaps = 6/404 (1%) Strand=Plus/Minus Query 143821 TGAACGCCATAATCCATATGACGGATACGGTTTTCTTCTACACCTTTGTTATTTTTCAAA 143880 || ||||| || ||||||||||||| |||||| ||||| ||||| ||||||||| | Sbjct 264950 TGTACGCCGTAGTCCATATGACGGACACGGTTGTCTTCAACACCGCGGTTATTTTTGAGT 264891 Query 143881 ACGAGAAGATTTTCAACTTCCAAATGCCAAATAGGATAATAAGCAGTAGCAGCGCCGCCA 143940 || || | |||||||| |||||||| | || || | || ||||| |||||| Sbjct 264890 ACCAGTAATGACTCAACTTCTAAATGCCATAGTGGGTAGAACAACGTCGCAGCACCGCCA 264831 Query 143941 CGAATTCCACCCTGTGAACATGATTTAACTGCAGTCTGAAAATGTTTCCAAAAAGGAATA 144000 || | ||||| ||||| || ||||||| || || || || ||| ||||||||||| Sbjct 264830 CGTACGCCACCTTGTGAGCAGCATTTAACGGCCGTTTGGAACAATTTATAAAAAGGAATA 264771 Query 144001 ACACCAGTATGACGCACTTCACCCATTCCAATCTTAG---AACCTTCGGCACGAATCATA 144057 |||||||| | ||||||| ||| ||| ||| |||||| || | Sbjct 264770 CAGCCAGTATGCTGTGCTTCACC---GCCACGGATAGGGCTACCAAGGGCACGGATACGA 264714 Query 144058 CCAACGTTAATACCAATTCCAGCGCGTTTGGAGATATATTCAACAATTGAAGCAGAAGCC 144117 || |||| || || || ||||| || | || | ||| || || | || | Sbjct 264713 CCTGCGTTGATGCCGATACCAGCACGCTGTGACACATAGCGTACGATGGCGCTAGTGGTG 264654 Query 144118 TTATTGATAGACTTTAATGAATCACCTGCCTCAATAACAACGCATGAACTAAACTGCCGA 144177 |||||||| | ||| |||||| || || | ||||| || |||||||| || Sbjct 264653 GCGTTGATAGAGTCTAAGCTATCACCACATTCGATTAAGACGCACGAGCTAAACTGACGC 264594 Query 144178 GTTGGAGTACGGCAACCAGCCATAATAGGGGTTGGCAGTGAAAT 144221 | ||| ||||| ||| | ||| || || ||||| ||||| || Sbjct 264593 GATGGCGTACGCACACCTGACATGATTGGCGTTGGTAGTGAGAT 264550 Score = 84.2 bits (92), Expect = 2e-11 Identities = 70/86 (81%), Gaps = 0/86 (0%) Strand=Plus/Minus Query 142864 TCAATATTGGGCACGACTTGATTAAAGGAGCCCTCTTTTGATTCTTTAACAGAGACTGGT 142923 ||||| | ||||||||||| || ||| ||| ||||||||| |||| | |||||| | Sbjct 265916 TCAATCTCAGGCACGACTTGCTTTAAGATGCCATCTTTTGATGCTTTGATAGAGACCAGA 265857 Query 142924 CCACGTGGAGGCTCGATACCGTTTGT 142949 |||||||| |||||||||||||| || Sbjct 265856 CCACGTGGTGGCTCGATACCGTTGGT 265831 >seq127984 Length=21361 Score = 86.0 bits (94), Expect = 7e-12 Identities = 68/82 (83%), Gaps = 0/82 (0%) Strand=Plus/Minus Query 74137 TAAATTGGAGCGGATAATGAGAATCGAACTCACATCATCAGATTGGAAGTCTGAGGTAAT 74196 ||||||||||||| | | ||||||||||||| ||||||||| ||||||| ||||||| | Sbjct 19915 TAAATTGGAGCGGGTGAAGAGAATCGAACTCTCATCATCAGCTTGGAAGGCTGAGGTTTT 19856 Query 74197 GCCATTATACGATATCCGCAAA 74218 ||| || || | | ||||||| Sbjct 19855 ACCACTAAACTACACCCGCAAA 19834 >seq252826 Length=193385 Score = 84.2 bits (92), Expect = 2e-11 Identities = 64/76 (84%), Gaps = 0/76 (0%) Strand=Plus/Minus Query 73885 TGGTGCTGATTGACGGAATCGAACCGCCGACCTTCTCATTACAAGTGAGTTGCTCTACCT 73944 |||||| || || ||| ||||||| | |||||| || ||||||||| |||||||||||| Sbjct 192022 TGGTGCCGACTGCCGGGATCGAACTGGCGACCTACTGATTACAAGTCAGTTGCTCTACCA 191963 Query 73945 ACTGAGCTAAATCAGC 73960 |||||||||| || || Sbjct 191962 ACTGAGCTAAGTCGGC 191947 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 526105533453920