Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Arabis_20nordmanniana_20[genbank_20GCA_5F001484925.1_202016-01-04] 267,228 sequences; 342,306,570 total letters Query= NC_025960.1 Length=148981 Score E Sequences producing significant alignments: (Bits) Value seq50902 111 1e-19 seq204555 96.9 3e-15 seq224638 86.0 6e-12 seq210337 84.2 2e-11 seq117562 84.2 2e-11 >seq50902 Length=6384 Score = 111 bits (122), Expect = 1e-19 Identities = 143/195 (73%), Gaps = 2/195 (1%) Strand=Plus/Minus Query 131930 GACTCTTTTTGAATGTTGTAGTC-GCTCATGGTACGCGAATCTTCGAGCTGTTTACCGGA 131988 |||||||| |||||||||||||| ||| ||| | || ||||||||||||||| || | Sbjct 4549 GACTCTTTCTGAATGTTGTAGTCCGCTAATG-TCCGACCATCTTCGAGCTGTTTTCCCGC 4491 Query 131989 ATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTAATTTTTTGTTTCAA 132048 | ||||||| | |||||| || ||||| || ||||||||||| ||| || ||||| Sbjct 4490 AAAGATTAGCCTCTGTTGGTCCGGAGGGATCCCTTCTTTATCTTGAATCTTCGTTTTCAC 4431 Query 132049 CTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTACCAGTCAGAGTTTT 132108 | || | ||||| | || || || | || | |||||||| |||| ||| || Sbjct 4430 ATTGTCAATTGTATCCGAGCTTTCGACCTCAAGAGTGATGGTTTTACCCGTCAAAGTCTT 4371 Query 132109 TATGAAAATCTGCAT 132123 | ||| |||||||| Sbjct 4370 GACGAATATCTGCAT 4356 >seq204555 Length=10983 Score = 96.9 bits (106), Expect = 3e-15 Identities = 141/197 (72%), Gaps = 2/197 (1%) Strand=Plus/Plus Query 131928 TTGACTCTTTTTGAATGTTGTAGT-CGCTCATGGTACGCGAATCTTCGAGCTGTTTACCG 131986 |||||||||| ||||||||||||| |||| || || || ||||||||| ||||| || Sbjct 1295 TTGACTCTTTCTGAATGTTGTAGTCCGCTAAT-GTCCGACCATCTTCGAGTTGTTTCCCC 1353 Query 131987 GAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTAATTTTTTGTTTC 132046 | | ||||||| | ||| || || || || || ||||||||||| ||| ||| || Sbjct 1354 GCAAAGATTAGCCTCTGCTGGTCCGGTGGGATCCCTTCTTTATCTTGAATCTTTGCCTTT 1413 Query 132047 AACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTACCAGTCAGAGTT 132106 | | || | || || | ||| ||||| | || | |||||||| || || || Sbjct 1414 ACATTGTCAATCGTGTCTGAGCTCTCAACTTCCAAAGTTATGGTTTTACCGGTAAGGGTC 1473 Query 132107 TTTATGAAAATCTGCAT 132123 || | ||| |||||||| Sbjct 1474 TTAACGAATATCTGCAT 1490 >seq224638 Length=5969 Score = 86.0 bits (94), Expect = 6e-12 Identities = 83/104 (80%), Gaps = 2/104 (2%) Strand=Plus/Plus Query 131928 TTGACTCTTTTTGAATGTTGTAGT-CGCTCATGGTACGCGAATCTTCGAGCTGTTTACCG 131986 |||||||||| ||||||||||| | |||| || || || ||||||||||||||| || Sbjct 3354 TTGACTCTTTCTGAATGTTGTAATCCGCTAAT-GTCCGACCATCTTCGAGCTGTTTTCCC 3412 Query 131987 GAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATC 132030 | | ||||||| | ||| || || ||||| || | ||||||||| Sbjct 3413 GCAAAGATTAGCCTCTGCTGGTCCGGAGGGATCCTTTCTTTATC 3456 >seq210337 Length=1863 Score = 84.2 bits (92), Expect = 2e-11 Identities = 146/210 (70%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 131915 ACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATG-GTACGCGAATCTTC 131973 ||||| |||| | ||||||||||| |||||||| || | || | ||||| |||||| Sbjct 1060 ACCAAGTGTAGAGTGGACTCTTTTTGGATGTTGTAATC-CGCAAGAGTACGTCCATCTTC 1118 Query 131974 GAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGT 132033 || || ||||||| | |||| || | ||| ||||| ||||| || |||||||| || Sbjct 1119 AAGTTGCTTACCGGCAAAGATAAGTCTCTGCTGATCCGGAGGGATACCTTCTTTGTCCTG 1178 Query 132034 AATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTT 132093 || || || | | || | ||||||| ||| || || | || | ||||| Sbjct 1179 GATCTTAGCCTTGACATTATCGATCGTATCGGAGCTCTCAACCTCAAGAGTAATGGTTTT 1238 Query 132094 ACCAGTCAGAGTTTTTATGAAAATCTGCAT 132123 ||||| ||||| || | || || ||||| Sbjct 1239 CCCAGTGAGAGTCTTGACAAAGATTTGCAT 1268 >seq117562 Length=2070 Score = 84.2 bits (92), Expect = 2e-11 Identities = 150/219 (68%), Gaps = 0/219 (0%) Strand=Plus/Minus Query 131905 CAAGCGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACG 131964 ||| || | |||||| || | | | ||||| || || ||||| ||||| || |||||| Sbjct 1221 CAATCGGAGAACCAAGTGCAAGGTCGACTCCTTCTGGATGTTATAGTCAGCCAAGGTACG 1162 Query 131965 CGAATCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTC 132024 |||||| ||||||||||||| |||| | || || ||||| ||||| || ||||| Sbjct 1161 GCCATCTTCTAGCTGTTTACCGGCGAAGATCAATCGTTGCTGATCCGGAGGAATCCCTTC 1102 Query 132025 TTTATCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGT 132084 || || || ||| || | | || | || || | ||| || |||| || Sbjct 1101 CTTGTCCTGGATCTTTGCCTTGACGTTGTCGATGGTGTCAGAGCTCTCGACCTCGAGAGT 1042 Query 132085 CAGCGTTTTACCAGTCAGAGTTTTTATGAAAATCTGCAT 132123 | || || ||||| |||||||| | ||| || ||||| Sbjct 1041 TATGGTCTTTCCAGTGAGAGTTTTCACGAATATTTGCAT 1003 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 475019151778080