Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Arabis_20nordmanniana_20[genbank_20GCA_5F001484925.1_202016-01-04]
267,228 sequences; 342,306,570 total letters
Query= NC_025960.1
Length=148981
Score E
Sequences producing significant alignments: (Bits) Value
seq50902 111 1e-19
seq204555 96.9 3e-15
seq224638 86.0 6e-12
seq210337 84.2 2e-11
seq117562 84.2 2e-11
>seq50902
Length=6384
Score = 111 bits (122), Expect = 1e-19
Identities = 143/195 (73%), Gaps = 2/195 (1%)
Strand=Plus/Minus
Query 131930 GACTCTTTTTGAATGTTGTAGTC-GCTCATGGTACGCGAATCTTCGAGCTGTTTACCGGA 131988
|||||||| |||||||||||||| ||| ||| | || ||||||||||||||| || |
Sbjct 4549 GACTCTTTCTGAATGTTGTAGTCCGCTAATG-TCCGACCATCTTCGAGCTGTTTTCCCGC 4491
Query 131989 ATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTAATTTTTTGTTTCAA 132048
| ||||||| | |||||| || ||||| || ||||||||||| ||| || |||||
Sbjct 4490 AAAGATTAGCCTCTGTTGGTCCGGAGGGATCCCTTCTTTATCTTGAATCTTCGTTTTCAC 4431
Query 132049 CTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTACCAGTCAGAGTTTT 132108
| || | ||||| | || || || | || | |||||||| |||| ||| ||
Sbjct 4430 ATTGTCAATTGTATCCGAGCTTTCGACCTCAAGAGTGATGGTTTTACCCGTCAAAGTCTT 4371
Query 132109 TATGAAAATCTGCAT 132123
| ||| ||||||||
Sbjct 4370 GACGAATATCTGCAT 4356
>seq204555
Length=10983
Score = 96.9 bits (106), Expect = 3e-15
Identities = 141/197 (72%), Gaps = 2/197 (1%)
Strand=Plus/Plus
Query 131928 TTGACTCTTTTTGAATGTTGTAGT-CGCTCATGGTACGCGAATCTTCGAGCTGTTTACCG 131986
|||||||||| ||||||||||||| |||| || || || ||||||||| ||||| ||
Sbjct 1295 TTGACTCTTTCTGAATGTTGTAGTCCGCTAAT-GTCCGACCATCTTCGAGTTGTTTCCCC 1353
Query 131987 GAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTAATTTTTTGTTTC 132046
| | ||||||| | ||| || || || || || ||||||||||| ||| ||| ||
Sbjct 1354 GCAAAGATTAGCCTCTGCTGGTCCGGTGGGATCCCTTCTTTATCTTGAATCTTTGCCTTT 1413
Query 132047 AACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTACCAGTCAGAGTT 132106
| | || | || || | ||| ||||| | || | |||||||| || || ||
Sbjct 1414 ACATTGTCAATCGTGTCTGAGCTCTCAACTTCCAAAGTTATGGTTTTACCGGTAAGGGTC 1473
Query 132107 TTTATGAAAATCTGCAT 132123
|| | ||| ||||||||
Sbjct 1474 TTAACGAATATCTGCAT 1490
>seq224638
Length=5969
Score = 86.0 bits (94), Expect = 6e-12
Identities = 83/104 (80%), Gaps = 2/104 (2%)
Strand=Plus/Plus
Query 131928 TTGACTCTTTTTGAATGTTGTAGT-CGCTCATGGTACGCGAATCTTCGAGCTGTTTACCG 131986
|||||||||| ||||||||||| | |||| || || || ||||||||||||||| ||
Sbjct 3354 TTGACTCTTTCTGAATGTTGTAATCCGCTAAT-GTCCGACCATCTTCGAGCTGTTTTCCC 3412
Query 131987 GAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATC 132030
| | ||||||| | ||| || || ||||| || | |||||||||
Sbjct 3413 GCAAAGATTAGCCTCTGCTGGTCCGGAGGGATCCTTTCTTTATC 3456
>seq210337
Length=1863
Score = 84.2 bits (92), Expect = 2e-11
Identities = 146/210 (70%), Gaps = 2/210 (1%)
Strand=Plus/Plus
Query 131915 ACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATG-GTACGCGAATCTTC 131973
||||| |||| | ||||||||||| |||||||| || | || | ||||| ||||||
Sbjct 1060 ACCAAGTGTAGAGTGGACTCTTTTTGGATGTTGTAATC-CGCAAGAGTACGTCCATCTTC 1118
Query 131974 GAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGT 132033
|| || ||||||| | |||| || | ||| ||||| ||||| || |||||||| ||
Sbjct 1119 AAGTTGCTTACCGGCAAAGATAAGTCTCTGCTGATCCGGAGGGATACCTTCTTTGTCCTG 1178
Query 132034 AATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTT 132093
|| || || | | || | ||||||| ||| || || | || | |||||
Sbjct 1179 GATCTTAGCCTTGACATTATCGATCGTATCGGAGCTCTCAACCTCAAGAGTAATGGTTTT 1238
Query 132094 ACCAGTCAGAGTTTTTATGAAAATCTGCAT 132123
||||| ||||| || | || || |||||
Sbjct 1239 CCCAGTGAGAGTCTTGACAAAGATTTGCAT 1268
>seq117562
Length=2070
Score = 84.2 bits (92), Expect = 2e-11
Identities = 150/219 (68%), Gaps = 0/219 (0%)
Strand=Plus/Minus
Query 131905 CAAGCGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACG 131964
||| || | |||||| || | | | ||||| || || ||||| ||||| || ||||||
Sbjct 1221 CAATCGGAGAACCAAGTGCAAGGTCGACTCCTTCTGGATGTTATAGTCAGCCAAGGTACG 1162
Query 131965 CGAATCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTC 132024
|||||| ||||||||||||| |||| | || || ||||| ||||| || |||||
Sbjct 1161 GCCATCTTCTAGCTGTTTACCGGCGAAGATCAATCGTTGCTGATCCGGAGGAATCCCTTC 1102
Query 132025 TTTATCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGT 132084
|| || || ||| || | | || | || || | ||| || |||| ||
Sbjct 1101 CTTGTCCTGGATCTTTGCCTTGACGTTGTCGATGGTGTCAGAGCTCTCGACCTCGAGAGT 1042
Query 132085 CAGCGTTTTACCAGTCAGAGTTTTTATGAAAATCTGCAT 132123
| || || ||||| |||||||| | ||| || |||||
Sbjct 1041 TATGGTCTTTCCAGTGAGAGTTTTCACGAATATTTGCAT 1003
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 475019151778080
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |