Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Arabis_20nordmanniana_20[genbank_20GCA_5F001484925.1_202016-01-04]
267,228 sequences; 342,306,570 total letters
Query= NC_026268.1
Length=139132
Score E
Sequences producing significant alignments: (Bits) Value
seq167623 93.3 4e-14
seq54724 84.2 2e-11
seq117562 82.4 7e-11
>seq167623
Length=7090
Score = 93.3 bits (102), Expect = 4e-14
Identities = 143/204 (70%), Gaps = 0/204 (0%)
Strand=Plus/Plus
Query 25175 ATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAAC 25234
||||| | || || ||||| ||||||| || |||| || |||| |||||| | |
Sbjct 2393 ATGCAGATCTTCGTGAAAACCCTAACCGGGAAGACGATAACTCTCGAGGTCGAATCATCC 2452
Query 25235 GATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCAG 25294
||||| ||||| | || ||| || || || || || || || || || ||||||
Sbjct 2453 GATACCATCGACAATGTCAAAGCGAAGATCCAAGACAAGGAAGGAATCCCACCGGATCAG 2512
Query 25295 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTCAGCGATTACAAT 25354
|| || | |||| || ||| |||||||||||||| | | | | || |||||||||
Sbjct 2513 CAGCGATTGATTTTCGCCGGAAAACAACTCGAAGACGGCCGTACTCTCGCCGATTACAAC 2572
Query 25355 ATTCAAAAAGAATCCACCATTCAT 25378
|| || || ||||| || |||||
Sbjct 2573 ATCCAGAAGGAATCGACGCTTCAT 2596
>seq54724
Length=7877
Score = 84.2 bits (92), Expect = 2e-11
Identities = 148/213 (69%), Gaps = 2/213 (1%)
Strand=Plus/Plus
Query 25175 ATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGA-AGCCAA 25233
||||| | ||||| || || || ||||| ||| | || || |||| || || ||| |
Sbjct 1875 ATGCAGATCTTTGTCAAGACCTTGACCGGTAAAACCATTACCCTCGAGGTTGAGAGCTCA 1934
Query 25234 CGATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCA 25293
|| || ||||| | || ||| || || || ||||| ||||| || || || ||
Sbjct 1935 -GACACCATCGACAACGTGAAAGCCAAGATCCAGGACAAAGAAGGTATCCCTCCGGACCA 1993
Query 25294 GCAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTCAGCGATTACAA 25353
||| ||| | || | | ||| || |||||||| || | |||| | | ||| |||||
Sbjct 1994 GCAGAGATTGATCTTTGCCGGAAAGCAACTCGAGGACGGCAGAACTCTGGCCGACTACAA 2053
Query 25354 TATTCAAAAAGAATCCACCATTCATTTAGTGTT 25386
|||||| ||||| || || |||| || |||||
Sbjct 2054 TATTCAGAAAGAGTCTACTCTTCACTTGGTGTT 2086
>seq117562
Length=2070
Score = 82.4 bits (90), Expect = 7e-11
Identities = 144/210 (69%), Gaps = 0/210 (0%)
Strand=Plus/Plus
Query 25175 ATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAAC 25234
|||||| | || || || || || |||||||| | || || ||||||||||| |
Sbjct 1231 ATGCAAATCTTCGTCAAGACTTTGACCGGAAAGACCATTACCCTCGAAGTCGAAAGCTCA 1290
Query 25235 GATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCAG 25294
|||||||| || | || ||| || || || || || ||||| || || ||||||
Sbjct 1291 GATACTATTGATAACGTCAAAGCTAAGATCCAGGACAAGGAAGGTATTCCTCCGGATCAG 1350
Query 25295 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTCAGCGATTACAAT 25354
|||||||| || | || ||| || || || ||||| | || | | | ||||||||
Sbjct 1351 CAAAGACTTATCTTCGCCGGTAAGCAGCTTGAAGACGGAAGGACTCTGGCGGATTACAAC 1410
Query 25355 ATTCAAAAAGAATCCACCATTCATTTAGTG 25384
|| || || || || || | ||| | |||
Sbjct 1411 ATCCAGAAGGAGTCTACACTCCATCTTGTG 1440
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 443607628920960
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |