Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Arabis_20nordmanniana_20[genbank_20GCA_5F001484925.1_202016-01-04] 267,228 sequences; 342,306,570 total letters Query= NC_026268.1 Length=139132 Score E Sequences producing significant alignments: (Bits) Value seq167623 93.3 4e-14 seq54724 84.2 2e-11 seq117562 82.4 7e-11 >seq167623 Length=7090 Score = 93.3 bits (102), Expect = 4e-14 Identities = 143/204 (70%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 25175 ATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAAC 25234 ||||| | || || ||||| ||||||| || |||| || |||| |||||| | | Sbjct 2393 ATGCAGATCTTCGTGAAAACCCTAACCGGGAAGACGATAACTCTCGAGGTCGAATCATCC 2452 Query 25235 GATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCAG 25294 ||||| ||||| | || ||| || || || || || || || || || |||||| Sbjct 2453 GATACCATCGACAATGTCAAAGCGAAGATCCAAGACAAGGAAGGAATCCCACCGGATCAG 2512 Query 25295 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTCAGCGATTACAAT 25354 || || | |||| || ||| |||||||||||||| | | | | || ||||||||| Sbjct 2513 CAGCGATTGATTTTCGCCGGAAAACAACTCGAAGACGGCCGTACTCTCGCCGATTACAAC 2572 Query 25355 ATTCAAAAAGAATCCACCATTCAT 25378 || || || ||||| || ||||| Sbjct 2573 ATCCAGAAGGAATCGACGCTTCAT 2596 >seq54724 Length=7877 Score = 84.2 bits (92), Expect = 2e-11 Identities = 148/213 (69%), Gaps = 2/213 (1%) Strand=Plus/Plus Query 25175 ATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGA-AGCCAA 25233 ||||| | ||||| || || || ||||| ||| | || || |||| || || ||| | Sbjct 1875 ATGCAGATCTTTGTCAAGACCTTGACCGGTAAAACCATTACCCTCGAGGTTGAGAGCTCA 1934 Query 25234 CGATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCA 25293 || || ||||| | || ||| || || || ||||| ||||| || || || || Sbjct 1935 -GACACCATCGACAACGTGAAAGCCAAGATCCAGGACAAAGAAGGTATCCCTCCGGACCA 1993 Query 25294 GCAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTCAGCGATTACAA 25353 ||| ||| | || | | ||| || |||||||| || | |||| | | ||| ||||| Sbjct 1994 GCAGAGATTGATCTTTGCCGGAAAGCAACTCGAGGACGGCAGAACTCTGGCCGACTACAA 2053 Query 25354 TATTCAAAAAGAATCCACCATTCATTTAGTGTT 25386 |||||| ||||| || || |||| || ||||| Sbjct 2054 TATTCAGAAAGAGTCTACTCTTCACTTGGTGTT 2086 >seq117562 Length=2070 Score = 82.4 bits (90), Expect = 7e-11 Identities = 144/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 25175 ATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAAC 25234 |||||| | || || || || || |||||||| | || || ||||||||||| | Sbjct 1231 ATGCAAATCTTCGTCAAGACTTTGACCGGAAAGACCATTACCCTCGAAGTCGAAAGCTCA 1290 Query 25235 GATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCAG 25294 |||||||| || | || ||| || || || || || ||||| || || |||||| Sbjct 1291 GATACTATTGATAACGTCAAAGCTAAGATCCAGGACAAGGAAGGTATTCCTCCGGATCAG 1350 Query 25295 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTCAGCGATTACAAT 25354 |||||||| || | || ||| || || || ||||| | || | | | |||||||| Sbjct 1351 CAAAGACTTATCTTCGCCGGTAAGCAGCTTGAAGACGGAAGGACTCTGGCGGATTACAAC 1410 Query 25355 ATTCAAAAAGAATCCACCATTCATTTAGTG 25384 || || || || || || | ||| | ||| Sbjct 1411 ATCCAGAAGGAGTCTACACTCCATCTTGTG 1440 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 443607628920960