Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Arabis_20nordmanniana_20[genbank_20GCA_5F001484925.1_202016-01-04] 267,228 sequences; 342,306,570 total letters Query= NC_026440.1 Length=2243109 Score E Sequences producing significant alignments: (Bits) Value seq27195 168 1e-35 seq146431 145 1e-28 >seq27195 Length=13093 Score = 168 bits (186), Expect = 1e-35 Identities = 357/524 (68%), Gaps = 14/524 (3%) Strand=Plus/Plus Query 1455753 TGTTCCCCATCCGCTACCAGCGGATATGGGAAATGTACCAAAAAGGCCGAGGCCTCCTTT 1455812 |||| || || | ||||| | ||| ||||| |||||| | |||| |||| || || || Sbjct 8658 TGTTTCCGATTCACTACCCACAGATCTGGGAGATGTACAAGAAAG-CCGAAGCATCGTTC 8716 Query 1455813 TGGACCGCCGAGGAGGTCGACCTCGGCGCCGACACGGTCC--ACTGGGTGTCGCTGAGCG 1455870 ||||||||||| || || || || | | |||| | |||||| | || | || Sbjct 8717 TGGACCGCCGAAGAAGTAGATCTATCA--CAAGACGGACGTGACTGGGAGAATCTCAACG 8774 Query 1455871 ACGACGAGCGCCATTTCATCAAGCACGTCCTCGCCTTTTTTCGCCGCCAGCGATGGCATC 1455930 ||| || || || |||||||| ||||||||||| ||| |||||||| || || ||| Sbjct 8775 ACGGAGAACGTCACTTCATCAAACACGTCCTCGC-TTTCTTCGCCGCATCTGACGGAATC 8833 Query 1455931 GTGGCCGAGAACCTGGCCGGCCGCTTTATGAAAGAGGTCCAATTGCCAGAGGCACGTTTG 1455990 || ||||| || || || || ||| ||| || ||| | | || || ||| Sbjct 8834 GTTCTAGAGAATCTCGCTTCTCGATTCATGTCAGATGTACAAGTCTCTGAAGCGCGTGCT 8893 Query 1455991 TTTTACGGGTTCCAGATCGCCATCGAAAACATCCACTCTGAAACCTACTCGCTCCTGATC 1456050 || ||||| ||||||||||| || || || ||||| ||||| | || ||||| | Sbjct 8894 TTCTACGGATTCCAGATCGCGATTGAGAATATCCATTCTGAGATGTATAGTCTCCTTCTG 8953 Query 1456051 GACACCTACGTCAAGGACCCGGTCGAGAAGGACCACCTCTTTCGCGCCATCGACACGGTG 1456110 || || ||| |||| || |||| || || ||||| ||||| ||||| || | Sbjct 8954 GATACATACATCAAAGATAACAAAGAGAGAGATCATCTCTTCCGCGCAATCGAAACAATC 9013 Query 1456111 CCGTCGGTGAGGAAAAAGGCCGACTGGGCGATGAAGTGGATCAACAAGGAGGGCCTCGAC 1456170 || | || || || || | ||||| |||| |||||| | || ||| | Sbjct 9014 CCTTGCGTCGCTAAGAAAGCTCAATGGGCTATGACATGGATC-----GATGGATCTC-AG 9067 Query 1456171 ACTTT-GCCGAGCGGCTCGTCGGCTTTGC-CGCGTCGAGGGCATCTTTTTCTCGGGCAGT 1456228 ||||| || || || |||||| || || ||||||| || ||||| ||||| || || Sbjct 9068 ACTTTCGCTGAACGAATCGTCGCTTTCGCGTGCGTCGAAGGTATCTTCTTCTCCGGTAGC 9127 Query 1456229 TTCTGCGCCATCTTTTGGCTCAAGAAGCGCGGCCTCATGCCCGG 1456272 ||||| | || || |||||||| || || || |||||||| || Sbjct 9128 TTCTGTTCGATTTTCTGGCTCAAAAAACGAGGGCTCATGCCTGG 9171 >seq146431 Length=15796 Score = 145 bits (160), Expect = 1e-28 Identities = 376/566 (66%), Gaps = 13/566 (2%) Strand=Plus/Minus Query 1455753 TGTTCCCCATCCGCTACCAGCGGATATGGGAAATGTACCAAAAAGGCCGAGGCCTCCTTT 1455812 |||| || || | ||||| | ||| ||||| |||||| | |||| |||| || ||||| Sbjct 4701 TGTTTCCGATTCACTACCCACAGATCTGGGAGATGTACAAGAAAG-CCGAAGCATCCTTC 4643 Query 1455813 TGGACCGCCGAGGAGGTCGACCTCGGCGCCGACACGGTCC--ACTGGGTGTCGCTGAGCG 1455870 ||||||||||| || || || || | | |||| | |||||| || | || Sbjct 4642 TGGACCGCCGAAGAAGTAGATCTATCA--CAAGACGGACGTGACTGGGAAAATCTCAACG 4585 Query 1455871 ACGACGAGCGCCATTTCATCAAGCACGTCCTCGCCTTTTTTCGCCGCCAGCGATGGCATC 1455930 ||| || || || |||||||| |||||||||||| || |||||||| || || ||| Sbjct 4584 ACGGAGAACGTCACTTCATCAAACACGTCCTCGCC-TTCTTCGCCGCATCTGACGGAATC 4526 Query 1455931 GTGGCCGAGAACCTGGCCGGCCGCTTTATGAAAGAGGTCCAATTGCCAGAGGCACGTTTG 1455990 || ||| || || || || || ||| ||| || ||| | | || || ||| Sbjct 4525 GTCCTCGAAAATCTCGCTTCTCGATTCATGTCAGATGTACAAGTCTCCGAAGCGCGTGCA 4466 Query 1455991 TTTTACGGGTTCCAGATCGCCATCGAAAACATCCACTCTGAAACCTACTCGCTCCTGATC 1456050 || ||||| || || ||||| || || || ||||| ||||| | || ||| | || Sbjct 4465 TTCTACGGATTTCAAATCGCGATTGAGAATATCCATTCTGAGATGTATAGTCTCTTACTC 4406 Query 1456051 GACACCTACGTCAAGGACCCGGTCGAGAAGGACCACCTCTTTCGCGCCATCGACACGGTG 1456110 || || ||| |||| || |||| || || || || ||||| |||| || | Sbjct 4405 GATACTTACATCAAAGATAACAAAGAGAGAGATCATCTATTCCGCGCAGTCGAAACAATT 4346 Query 1456111 CCGTCGGTGAGGAAAAAGGCCGACTGGGCGATGAAGTGGATCAACAAGGAGGGCCTCGAC 1456170 || | || || || || | ||||| |||| |||||| | || ||| | Sbjct 4345 CCTTGTGTTGCTAAGAAAGCTCAATGGGCTATGACTTGGATC-----GATGGATCTCAAA 4291 Query 1456171 ACTTTGCCGAGCGGCTCGTCGGCTTTGC-CGCGTCGAGGGCATCTTTTTCTCGGGCAGTT 1456229 ||||| || || |||| | || || | || || || ||||| ||||| || || | Sbjct 4290 CTTTTGCTGAACGAATCGTAGCTTTCGCTTGTGTTGAAGGTATCTTCTTCTCAGGTAGCT 4231 Query 1456230 TCTGCGCCATCTTTTGGCTCAAGAAGCGCGGCCTCATGCCCGGTCTTCTGCTTTAGCAAC 1456289 |||| | || || ||||| ||||| || || |||||||| || || ||| ||| Sbjct 4230 TCTGTTCGATTTTCTGGCTTAAGAAACGTGGACTCATGCCTGG-ATTAACCTTCTCTAAC 4172 Query 1456290 GAATTTATCAGTCGCGACGAAGTTTT 1456315 ||||| ||| || ||||||| ||| Sbjct 4171 GAATTGATCTCACGAGACGAAGGTTT 4146 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7152036568234936