Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Arabis_20nordmanniana_20[genbank_20GCA_5F001484925.1_202016-01-04]
267,228 sequences; 342,306,570 total letters
Query= NC_026607.2
Length=159914
Score E
Sequences producing significant alignments: (Bits) Value
seq26767 179 4e-40
seq249537 113 5e-20
seq158858 86.0 6e-12
>seq26767
Length=1149
Score = 179 bits (198), Expect = 4e-40
Identities = 290/417 (70%), Gaps = 0/417 (0%)
Strand=Plus/Plus
Query 133252 CATCAAATCATTGATTTGCAGACCATAGTCTAGATGACGAATACGGTTTTCATCTACGCC 133311
|||||| | ||| ||||| | |||| || | ||||| | | ||||| || | |||
Sbjct 33 CATCAATTTATTAATTTGTACTGCATAATCAACGTGACGTACTCTATTTTCTTCAATGCC 92
Query 133312 TTTGTTGTTCTTTAATACCAACAGGTTTTCAACCTCAAGATGCCACATTGGATAATAAAG 133371
| || || ||||| || || | |||||| |||| |||||| ||||||||| | |
Sbjct 93 CCTATTATTTTTTAAAACTAATAAACTTTCAATTTCAAAATGCCATATTGGATAAAATAT 152
Query 133372 AGTAGCTGCACCACCACGTACACCGCCTTGAGAACAAGATTTTACTGCAGTCTGAAAATG 133431
||| || || ||||| | || || ||||||||||| |||||||| ||| | ||||||||
Sbjct 153 AGTTGCCGCTCCACCTCTAACTCCTCCTTGAGAACAGGATTTTACAGCACTTTGAAAATG 212
Query 133432 TTTCCAGAAAGGAATTACGCCAGTATGTTTTACTTCGCCATTACCAATTTTTGAGCCTTC 133491
||| | |||||||| |||||||| | |||||||||| | ||| ||| |
Sbjct 213 TTTATAAAAAGGAATACAACCAGTATGAAATGCTTCGCCATTTCTAATAGGACTACCTAC 272
Query 133492 AGCTCGAATCATACCGGCGTTGATGCCGATACCAGCTCGCTTGCTGATATACTTAATAAT 133551
|| ||||| | || || || || || || || ||||| | | ||| || | |||
Sbjct 273 TGCACGAATTTTTCCAGCATTAATACCAATTCCTGCTCGTTGAGAAACATATTTTACAAT 332
Query 133552 ACTGTTACTTGCCGCATTAATAGAATTCAGTGAATCGCCAGCTTCAATAACTACACAAGA 133611
| || | | || |||||||||| || ||| || |||||| | ||||| ||
Sbjct 333 AGAACTAGTAGTAGCGTTAATAGAATCTAGATTATCATCACATTCAATTAAAACACATGA 392
Query 133612 ACTAAACTGACGAGTAGGAGTACGAGCCCCTGCCATAATCGGTGTAGGCAATGAAAT 133668
||||| || ||||||||||| | | | || | |||||| ||||| || || |||||
Sbjct 393 GCTAAATTGTCGAGTAGGAGTTCTAACTCCAGACATAATTGGTGTCGGTAAAGAAAT 449
>seq249537
Length=1253
Score = 113 bits (124), Expect = 5e-20
Identities = 65/67 (97%), Gaps = 0/67 (0%)
Strand=Plus/Minus
Query 62452 TGGCCCCTGCTGGACTTGAACCAGCGACCAAGCGATTATGAGTCGCCTGCTCTAACCACT 62511
|||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 69 TGGCCCCTGCTGGATTTGAACCAGCGACCAAGCGATTATGAGTCGCCTGCTCTTACCACT 10
Query 62512 GAGCTAA 62518
|||||||
Sbjct 9 GAGCTAA 3
>seq158858
Length=235449
Score = 86.0 bits (94), Expect = 6e-12
Identities = 118/161 (73%), Gaps = 3/161 (2%)
Strand=Plus/Minus
Query 62366 TTGGCTGGGAATACTGGGCTCGAACCAGTGCATCCCGGAATCAAAATCCGGTGCCTTACC 62425
|||||||||||| | | |||||| | ||||| || ||||| || |||||||||
Sbjct 162462 TTGGCTGGGAATGATAGATTCGAACTACCGCATCAGAGAGTCAAAGTCTCTTGCCTTACC 162403
Query 62426 AACTTGGCTAATTCCCAAT-TATTTGGTGGCCCCTGCTGGACTTGAACCAGCGACCAAGC 62484
||||||||||||||||| || || |||| | || | || | |||| | ||||| |
Sbjct 162402 -GCTTGGCTAATTCCCAATATAATTAATGGCTCTTGATTGAATCGAACAATCGACCTCTC 162344
Query 62485 GATTATGAGTCGCCTGCTCTAACC-ACTGAGCTAAGGGGCC 62524
||||||| | ||||||||| |||||||||| | |||
Sbjct 162343 CCTTATGAGGGGAACGCTCTAACCAACTGAGCTAAAGAGCC 162303
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 509887887629120
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |