Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Arabis_20nordmanniana_20[genbank_20GCA_5F001484925.1_202016-01-04]
267,228 sequences; 342,306,570 total letters
Query= NC_026923.1
Length=179110
Score E
Sequences producing significant alignments: (Bits) Value
seq28607 630 8e-176
seq218717 140 4e-28
seq180749 109 6e-19
>seq28607
Length=83266
Score = 630 bits (698), Expect = 8e-176
Identities = 751/1016 (74%), Gaps = 6/1016 (1%)
Strand=Plus/Plus
Query 159379 TTTGATGTCCTGGATGACTGGCTTAAACGAGATCGCTTTGTCTTTGTGGGTTGGTCTGGA 159438
|||||| | ||||||||||| | | || ||||| || ||||| |||||||||||
Sbjct 32404 TTTGATATTATGGATGACTGGTTACGGAGGGACCGCTTCGTTTTTGTAGGTTGGTCTGGT 32463
Query 159439 CTCCTACTTCTTCCCACTGCTTATATGGCCATTGGCGGTTGGCTTACTGGCACGACTTTT 159498
|| | || |||| ||| ||| | || | || |||||| | || || || || |||
Sbjct 32464 CTATTGCTCTTTCCTTGTGCCTATTTCGCTTTAGGGGGTTGGTTCACAGGTACAACCTTT 32523
Query 159499 ATCACGAGTTGGTACACCCACGGTCTTGCTAGTTCCTACCTTGAAGGTGCTAATTTTCTC 159558
| || ||||| || || || | ||||||||||| | |||||| |||||| |
Sbjct 32524 GTAACTTCATGGTATACTCATGGATTGGCTAGTTCCTATTTAGAAGGTTGCAATTTTTTA 32583
Query 159559 ACGGCAGCTGTCTCAACGCCTGCTGATGCTATGGGTCATTCTCTTCTTCTACTTTGGGGT 159618
|| || || || || || |||||| || | | | |||||| | | |||| ||||||
Sbjct 32584 ACCGCTGCCGTTTCGACTCCTGCTAATAGTTTAGCGCATTCTTTGTTGTTACTGTGGGGT 32643
Query 159619 CCTGAGTCTCAAGGCGACTTCCAACGCTGGTGCCAACTTGGAGGGATTTGGTCCTTTGTT 159678
||||| | ||||| || || || ||||| ||| | || || | ||| | ||||||
Sbjct 32644 CCTGAAGCACAAGGAGATTTTACTCGTTGGTGTCAATTAGGCGGTCTGTGGGCTTTTGTT 32703
Query 159679 GCTCTCCACGGTGCATTCGCTCTCATAGGTTTTATGCTACGGCAATTTGAAATTGCTCGT 159738
||||||||||| || ||||| | |||||||||||| |||| ||||||||| |||||||
Sbjct 32704 GCTCTCCACGGCGCTTTCGCATTAATAGGTTTTATGTTACGTCAATTTGAACTTGCTCGA 32763
Query 159739 CTAGTTGGTATCCGTCCTTACAATGCTATTGCGTTCTCTGGTCCTATTGCTGTTTTTGTC 159798
||| | || ||||| ||||| || || ||||||||||| ||||||||||||||
Sbjct 32764 TCCGTTCAATTGCGACCTTATAATGCAATCGCATTCTCTGGTCCAATTGCTGTTTTTGTT 32823
Query 159799 AGCGTATTCCTTATCTATCCACTGGGTCAGTCTTCATGGTTCTTTGCACCTAGTTTCGGG 159858
|| ||||| || |||||||||||||| ||| ||||||||||| |||||||| ||
Sbjct 32824 TCTGTCTTCCTAATTTATCCACTGGGTCAATCTGGTTGGTTCTTTGCGCCTAGTTTTGGT 32883
Query 159859 GTAGCAGCAATCTTTAGAT---TCCTGTTGTTCCTTCAGGGTTTCCACAACTGGACCCTC 159915
||||| || || ||| ||| |||| || |||| ||||||| || || ||||| |
Sbjct 32884 GTAGCGGCTATATTTCGATTCATCCTCTTTTTCC--AAGGGTTT-CATAATTGGACATTG 32940
Query 159916 AACCCCTTCCATATGATGGGAGTTGCTGGTATACTAGGTGGAGCACTGTTGTGTGCAATC 159975
||||| || |||||||||||||| || ||| |||| || | || ||| | || || ||
Sbjct 32941 AACCCATTTCATATGATGGGAGTCGCCGGTGTACTGGGCGCCGCTCTGCTATGCGCTATT 33000
Query 159976 CATGGTGCTACTGTAGAGAACACATTGTTTGAAGATGGAGAACAAGCAAACACATTTAAG 160035
||||||||||||||||| || || || ||||||||||| || ||||| |||||
Sbjct 33001 CATGGTGCTACTGTAGAAAATACTTTATTTGAAGATGGTGATGGTGCAAATACATTCCGT 33060
Query 160036 GCGTTTGAGCCTACTCAAGAAGAAGAGACTTATTCTATGGTCACTGCAAACCGCTTCTGG 160095
|| ||| | || ||||||| ||||| |||||||| |||||||| || |||||||| |||
Sbjct 33061 GCTTTTAACCCAACTCAAGCTGAAGAAACTTATTCAATGGTCACCGCTAACCGCTTTTGG 33120
Query 160096 TCGCAGATCTTCGGTGTTGCATTTTCTAACAAGCGGTGGCTTCATTTTTTCATGTTGTTT 160155
|| || ||||| || ||||| ||||| || || || ||| | ||||| || ||||| |||
Sbjct 33121 TCACAAATCTTTGGGGTTGCTTTTTCCAATAAACGTTGGTTACATTTCTTTATGTTATTT 33180
Query 160156 GTGCCTGTTATGGGTCTATGGACATCCTCTATTGGCATTATTGGTCTTGCTTTCAACCTT 160215
|| || || | ||| |||||| || |||| | | || || ||||| |||||
Sbjct 33181 GTACCGGTAACTGGTTTATGGATGAGTGCTCTTGGAGTAGTCGGCCTAGCTTTGAACCTA 33240
Query 160216 CGTGCTTACGATTTCGTGAGTCAGGAGATTAGAGCAGCAGAAGATCCTGAATTTGAGACC 160275
||||| || || ||||| ||||| || | ||||| |||||||| |||||||||||
Sbjct 33241 CGTGCCTATGACTTCGTTTCCCAGGAAATCCGTGCAGCGGAAGATCCGGAATTTGAGACT 33300
Query 160276 TTCTACACCAAGAACATCCTATTGAATGAAGGACTTCGTGCTTGGATGGCACCTGCTGAT 160335
||||| || || || || || || || ||||| |||||||||||||||| || |||
Sbjct 33301 TTCTATACTAAAAATATTCTTTTAAACGAAGGTATTCGTGCTTGGATGGCGGCTCAAGAT 33360
Query 160336 CAACCACATGAAAACTTTATCTTCCCTGAGGAAGTACTACCTAGAGGTAACGCACT 160391
|| || ||||||||| |||| ||||||||||| || ||||| | || ||||| ||
Sbjct 33361 CAGCCTCATGAAAACCTTATATTCCCTGAGGAGGTTCTACCACGTGGAAACGCTCT 33416
Score = 596 bits (660), Expect = 2e-165
Identities = 736/1004 (73%), Gaps = 2/1004 (0%)
Strand=Plus/Minus
Query 157675 CTTCTGCGAGTGGGTAACCTCAACCAACAACCGTTTGTATGTTGGTTGGTTCGGTGTACT 157734
|||||| | ||| ||||| || | || ||| | || |||| ||||| ||||| |
Sbjct 1503 CTTCTGTAACTGGATAACCAGCACTGAAAATCGTCTTTACATTGGATGGTTTGGTGTTTT 1444
Query 157735 GATGATTCCTACGTTGCTTGCTGCAACTATCTGTTTCATCGTCGCCTTCGTCGCTGCTCC 157794
|||||| ||||| || | | |||||| | ||| || |||| ||| | ||||||||
Sbjct 1443 GATGATCCCTACCTTATTGACCGCAACTTCCGTTTTTATTATCGCATTCATTGCTGCTCC 1384
Query 157795 CCCTGTGGACATTGACGGCATCCGCGAACCAGTTGCTGGTTCACTCATGTATGGTAACAA 157854
|| || || ||||| || || || ||||| ||| |||| || || | || || |||||
Sbjct 1383 TCCAGTAGATATTGATGGTATTCGTGAACCTGTTTCTGGATCTCTTCTTTACGGAAACAA 1324
Query 157855 CATCATCTCTGGTGCAGTTGTTCCTAGTTCAAACGCAATCGGTCTCCACTTCTACCCCAT 157914
|| || || ||||| || |||||| ||| || || ||| | || || ||||| ||
Sbjct 1323 TATTATTTCAGGTGCCATTATTCCTACTTCTGCAGCTATTGGTTTGCATTTTTACCCGAT 1264
Query 157915 CTGGGAAGCAGCATCTCTTGACGAGTGGCTGTATAACGGTGGTCCTTTCCAACTTGTAGT 157974
||||||||| ||||| |||| || ||||| || ||||| ||||||| |||| | ||
Sbjct 1263 CTGGGAAGCTGCATCCGTTGATGAATGGCTATACAACGGCGGTCCTTATGAACTAATTGT 1204
Query 157975 ATTCCACTTCCTGATCGGCATCTATGCCTATATGGGACGTGAGTGGGAACTCTCTTACCG 158034
| ||||| | | || | | |||||||| |||||||||||||| || |||
Sbjct 1203 TCTACACTTTTTACTTGGTGTAGCTTGTTATATGGGTCGTGAGTGGGAACTTAGTTTCCG 1144
Query 158035 TTTAGGTATGCGCCCATGGATCTGTGTAGCATATTCTGCTCCAGTCGCTGCAGCGAGTGC 158094
| | |||||||| || ||||| ||| |||||||| ||||| || || || || | |||
Sbjct 1143 TCTGGGTATGCGTCCTTGGATTGCTGTTGCATATTCAGCTCCTGTTGCAGCTGCAACTGC 1084
Query 158095 AGTATTCCTAGTCTATCCTTTCGGTCAAGGTTCTTTCTCCGATGCTATGCCTCTTGGTAT 158154
|| ||| | |||| || | |||||||| ||| || |||| ||||||||| || ||
Sbjct 1083 TGTTTTCTTGATCTACCCAATTGGTCAAGGAAGTTTTTCTGATGGTATGCCTCTAGGAAT 1024
Query 158155 CTCTGGTACTTTTAACTACATGCTTGTATTCCAAGCAGAACACAACATCCTTATGCACCC 158214
|||||||||||| |||| ||| |||||||||| || || |||||||| |||||||||||
Sbjct 1023 CTCTGGTACTTTCAACTTTATGATTGTATTCCAGGCTGAGCACAACATTCTTATGCACCC 964
Query 158215 GTTCCATATGCTCGGTGTTGCTGGGGTATTCGGTGGATCTCTTTTCTCTGCTATGCATGG 158274
|| || ||| | ||||| ||||| |||||||| || || || || ||||||||||||
Sbjct 963 ATTTCACATGTTAGGTGTAGCTGGTGTATTCGGCGGCTCCCTATTTAGTGCTATGCATGG 904
Query 158275 AAGTCTCGTTACTTCCTCACTCGTTC-GTGAAACGACTGAAACAGAGTCACAGAACTACG 158333
| || ||||| | | | || | ||||| || |||| || || || | |
Sbjct 903 TTCCTTGGTAACTTC-TAGTTTGATCAGGGAAACCACAGAAAATGAATCTGCTAATGAAG 845
Query 158334 GTTATAAGTTCGGTCAAGAAGAAGAGACCTACAACATCGTTGCAGCCCATGGCTACTTCG 158393
|||| || ||||| ||||||||||| || |||||||| || || || ||||| || || |
Sbjct 844 GTTACAAATTCGGACAAGAAGAAGAAACTTACAACATTGTAGCTGCTCATGGTTATTTTG 785
Query 158394 GTCGTTTGATCTTCCAATACGCTTCATTCAACAACTCCCGTTCCTTGCACTTCTTCCTTG 158453
| || |||||||||||||| ||| |||||||| || ||||| || || |||||| | |
Sbjct 784 GCCGATTGATCTTCCAATATGCTAGTTTCAACAATTCTCGTTCTTTACATTTCTTCTTAG 725
Query 158454 CTGCATGGCCTGTTGTCGGCATCTGGTTCACCGCCCTTGGCGTGTCAACCATGGCATTCA 158513
| || ||||| || || || || ||||| || || | || | |||||||| ||||
Sbjct 724 CGGCTTGGCCGGTAGTAGGTATTTGGTTTACTGCTTTAGGTATTAGCACCATGGCTTTCA 665
Query 158514 ACCTGAACGGTTTCAACTTCAACCAGTCCATCCTTGATGGTCAGGGTCGTGTGTTGAACA 158573
|||| || |||||||| |||||||| || | ||||| |||| || ||||| | || |
Sbjct 664 ACCTAAATGGTTTCAATTTCAACCAATCAGTAGTTGATAGTCAAGGACGTGTTATTAATA 605
Query 158574 CCTGGGCAGATGTACTGAACCGCGCTGGTCTTGGTATGGAAGTTATGCATGAGCGTAACG 158633
| ||||| ||| | | ||||| ||| ||||||||||||||||||||||| ||||| |
Sbjct 604 CTTGGGCTGATATTATTAACCGTGCTAACCTTGGTATGGAAGTTATGCATGAACGTAATG 545
Query 158634 CACACAACTTCCCACTGGATCTTGCTGCTGCTGAGTCTACACCT 158677
| ||||||||||| || || || ||||||| |||| || || ||
Sbjct 544 CTCACAACTTCCCTCTAGACCTAGCTGCTGTTGAGGCTCCATCT 501
>seq218717
Length=448
Score = 140 bits (154), Expect = 4e-28
Identities = 163/219 (74%), Gaps = 1/219 (0%)
Strand=Plus/Minus
Query 158003 TATATGGGACGTGAGTGGGAACTCTCTTACCGTTTAGGTATGCGCCCATGGATCTGTGTA 158062
|||||| | |||||||||||||| || || | |||||||| || ||||| |||
Sbjct 226 TATATGAGTCGTGAGTGGGAACTTAGTTTATGTCTGGGTATGCGTCCTTGGATTGTTGTT 167
Query 158063 GCATATTCTGCTCCAGTC-GCTGCAGCGAGTGCAGTATTCCTAGTCTATCCTTTCGGTCA 158121
|||||||| ||||| || || || || | || || ||| | | ||||| | |||||
Sbjct 166 GCATATTCAGCTCCTGTTTGCAGCTGCTATTGTTGTTTTCTTGATTTATCCAATTGGTCA 107
Query 158122 AGGTTCTTTCTCCGATGCTATGCCTCTTGGTATCTCTGGTACTTTTAACTACATGCTTGT 158181
||| ||| | ||| ||||||||| || |||||| ||||||| |||| || ||||
Sbjct 106 AGGAAGTTTTTTTAATGGTATGCCTCTAGGAATCTCTTGTACTTTCAACTTTATTATTGT 47
Query 158182 ATTCCAAGCAGAACACAACATCCTTATGCACCCGTTCCA 158220
|||||| || || |||||||| ||||||||||| || ||
Sbjct 46 ATTCCAGGCTGAGCACAACATTCTTATGCACCCATTTCA 8
>seq180749
Length=15184
Score = 109 bits (120), Expect = 6e-19
Identities = 138/188 (73%), Gaps = 4/188 (2%)
Strand=Plus/Plus
Query 158844 TACATTCTAGACGCTGCAGAAGAGGCAGGAGTTGATATTAACTATTCCTGTCGTGCTGGT 158903
||| | || ||||| || ||||| |||||| | ||| | || || || || |||||
Sbjct 10955 TACGTCCTCGACGCAGCTGAAGAAGCAGGAATCGATTTGCCTTACTCTTGCCGCTCTGGT 11014
Query 158904 GCCTGTTCTTCCTGTGCTGGTAAACTT--GTCAGCGGAACTGTTGACCAAAGCGATCAGT 158961
| |||||| |||||| |||||| || ||| | |||||||||| || || |||
Sbjct 11015 TCATGTTCTAGCTGTGCAGGTAAAGTTAAGTCTG--GAACTGTTGATCAGTCTGACCAGA 11072
Query 158962 CATTCTTGGATGATGATCAGATTGCAGAAGGATTTATCCTTACGTGTGTATCTTATCCCA 159021
||| | ||||||||||||||||| ||||||||| | || || |||| ||||||| |
Sbjct 11073 GTTTCCTCGATGATGATCAGATTGCTGAAGGATTTGTTCTCACTTGTGCTGCTTATCCTA 11132
Query 159022 CTTCTGAT 159029
| ||||||
Sbjct 11133 CCTCTGAT 11140
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 571109899281600
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