Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Arabis_20nordmanniana_20[genbank_20GCA_5F001484925.1_202016-01-04] 267,228 sequences; 342,306,570 total letters Query= NC_026924.1 Length=174885 Score E Sequences producing significant alignments: (Bits) Value seq28607 587 8e-163 seq218717 132 5e-26 seq180749 104 3e-17 seq116136 84.2 2e-11 seq121921 82.4 9e-11 >seq28607 Length=83266 Score = 587 bits (650), Expect = 8e-163 Identities = 703/952 (74%), Gaps = 2/952 (0%) Strand=Plus/Minus Query 160002 GGTTGGTTCGGCGTACTGATGATTCCAACTCTGTTGGCAGCAACCATCTGTTTCATCGTC 160061 || ||||| || || ||||||| || || | ||| | ||||| | ||| || || Sbjct 1460 GGATGGTTTGGTGTTTTGATGATCCCTACCTTATTGACCGCAACTTCCGTTTTTATTATC 1401 Query 160062 GCCTTCGTCGCTGCTCCCCCTGTGGACATCGACGGCATCCGTGAACCCGTCGCTGGTTCA 160121 || ||| | |||||||| || || || || || || || |||||||| || |||| || Sbjct 1400 GCATTCATTGCTGCTCCTCCAGTAGATATTGATGGTATTCGTGAACCTGTTTCTGGATCT 1341 Query 160122 CTCATGTATGGTAACAACATCATCTCTGGTGCAGTTGTTCCATCTTCCAACGCAATTGGT 160181 || | || || ||||| || || || ||||| || |||| |||| || |||||| Sbjct 1340 CTTCTTTACGGAAACAATATTATTTCAGGTGCCATTATTCCTACTTCTGCAGCTATTGGT 1281 Query 160182 CTTCACTTCTATCCCATCTGGGAAGCCGCATCACTTGATGAGTGGCTGTATAACGGTGGT 160241 | || || || || ||||||||||| ||||| ||||||| ||||| || ||||| ||| Sbjct 1280 TTGCATTTTTACCCGATCTGGGAAGCTGCATCCGTTGATGAATGGCTATACAACGGCGGT 1221 Query 160242 CCTTTCCAACTCGTAGTATTTCACTTCCTTATCGGCATCTATGCATATATGGGACGTGAG 160301 |||| |||| | || | ||||| | | || | | |||||||| |||||| Sbjct 1220 CCTTATGAACTAATTGTTCTACACTTTTTACTTGGTGTAGCTTGTTATATGGGTCGTGAG 1161 Query 160302 TGGGAACTTTCATACCGTTTAGGTATGCGCCCCTGGATCTGTGTAGCATATTCTGCTCCA 160361 ||||||||| | |||| | |||||||| || ||||| ||| |||||||| ||||| Sbjct 1160 TGGGAACTTAGTTTCCGTCTGGGTATGCGTCCTTGGATTGCTGTTGCATATTCAGCTCCT 1101 Query 160362 GTCGCTGCAGCATCTGCTGTATTCCTCGTATATCCTTTCGGTCAAGGTTCTTTCTCCGAT 160421 || || || ||| ||||||| ||| | | || || | |||||||| ||| || ||| Sbjct 1100 GTTGCAGCTGCAACTGCTGTTTTCTTGATCTACCCAATTGGTCAAGGAAGTTTTTCTGAT 1041 Query 160422 GCTATGCCTCTTGGTATCTCTGGTACTTTTAACTACATGCTTGTATTCCAAGCAGAACAC 160481 | ||||||||| || |||||||||||||| |||| ||| |||||||||| || || ||| Sbjct 1040 GGTATGCCTCTAGGAATCTCTGGTACTTTCAACTTTATGATTGTATTCCAGGCTGAGCAC 981 Query 160482 AATATCCTTATGCATCCGTTCCACATGCTCGGCGTTGCTGGGGTATTCGGTGGATCTTTG 160541 || || |||||||| || || |||||| | || || ||||| |||||||| || || | Sbjct 980 AACATTCTTATGCACCCATTTCACATGTTAGGTGTAGCTGGTGTATTCGGCGGCTCCCTA 921 Query 160542 TTCTCTGCTATGCACGGAAGTCTCGTTACTTCCTCACTCGTTC-GTGAAACGACTGAAAC 160600 || ||||||||| || | || ||||| | | | || | ||||| || |||| Sbjct 920 TTTAGTGCTATGCATGGTTCCTTGGTAACTTC-TAGTTTGATCAGGGAAACCACAGAAAA 862 Query 160601 AGAGTCACAGAACTACGGTTATAAGTTCGGTCAAGAGGAAGAGACCTACAACATCGTCGC 160660 || || || | ||||| || ||||| ||||| ||||| || |||||||| || || Sbjct 861 TGAATCTGCTAATGAAGGTTACAAATTCGGACAAGAAGAAGAAACTTACAACATTGTAGC 802 Query 160661 AGCCCATGGTTACTTCGGTCGTTTGATCTTCCAATATGCATCATTCAACAACTCCCGTTC 160720 || |||||||| || || || ||||||||||||||||| |||||||| || ||||| Sbjct 801 TGCTCATGGTTATTTTGGCCGATTGATCTTCCAATATGCTAGTTTCAACAATTCTCGTTC 742 Query 160721 ACTTCACTTCTTCCTGGCAGCATGGCCTGTAGTCGGAATCTGGTTCACTGCTCTTGGTGT 160780 | || |||||| | || || ||||| ||||| || || ||||| |||||| | ||| | Sbjct 741 TTTACATTTCTTCTTAGCGGCTTGGCCGGTAGTAGGTATTTGGTTTACTGCTTTAGGTAT 682 Query 160781 TAGCACCATGGCATTCAACCTCAACGGTTTCAACTTCAACCAGTCCATCCTCGATGGTCA 160840 |||||||||||| |||||||| || |||||||| |||||||| || | | ||| |||| Sbjct 681 TAGCACCATGGCTTTCAACCTAAATGGTTTCAATTTCAACCAATCAGTAGTTGATAGTCA 622 Query 160841 AGGTCGTGTACTGAACACCTGGGCAGACGTACTGAATCGTGCTGGTCTTGGTATGGAAGT 160900 ||| ||||| | || || ||||| || | | || |||||| |||||||||||||| Sbjct 621 AGGACGTGTTATTAATACTTGGGCTGATATTATTAACCGTGCTAACCTTGGTATGGAAGT 562 Query 160901 TATGCATGAGCGTAACGCACACAACTTCCCACTCGACCTCGCTGCTGCTGAG 160952 ||||||||| ||||| || ||||||||||| || ||||| ||||||| |||| Sbjct 561 TATGCATGAACGTAATGCTCACAACTTCCCTCTAGACCTAGCTGCTGTTGAG 510 Score = 506 bits (560), Expect = 2e-138 Identities = 725/1019 (71%), Gaps = 2/1019 (0%) Strand=Plus/Plus Query 161688 TTTGACATACTCGACGACTGGCTTAAACGGGATCGTTTCGTTTTTGTTGGCTGGTCTGGA 161747 ||||| || | || |||||| | |||| || ||||||||||| || |||||||| Sbjct 32404 TTTGATATTATGGATGACTGGTTACGGAGGGACCGCTTCGTTTTTGTAGGTTGGTCTGGT 32463 Query 161748 CTTCTTCTTCTTCCCACTGCTTATCTTGCTATTGGCGGTTGGCTTACTGGCACAACTTTC 161807 || | || |||| ||| ||| | ||| | || |||||| | || || ||||| || Sbjct 32464 CTATTGCTCTTTCCTTGTGCCTATTTCGCTTTAGGGGGTTGGTTCACAGGTACAACCTTT 32523 Query 161808 GCAACGAGCTGGTATACCCATGGTCTCGCTAGTTCCTATCTTGAGGGTGCAAACTTTCTT 161867 | ||| |||||||| ||||| | |||||||||||| | || ||| || ||| | Sbjct 32524 GTAACTTCATGGTATACTCATGGATTGGCTAGTTCCTATTTAGAAGGTTGCAATTTTTTA 32583 Query 161868 ACAGCGTCAGTTAGCACTCCAGCTGACGCTATGGGTCATTCTCTTCTTCTT-CTCTGGGG 161926 || || | ||| ||||| ||| | | | | |||||| || || || || ||||| Sbjct 32584 ACCGCTGCCGTTTCGACTCCTGCTAATAGTTTAGCGCATTCT-TTGTTGTTACTGTGGGG 32642 Query 161927 TCCTGAGGCTCAAGGGGATTTCGTCCGCTGGGTCCAACTTGGGGGACTCTGGAATTTTGT 161986 |||||| || ||||| ||||| || ||| ||| | || || || ||| |||||| Sbjct 32643 TCCTGAAGCACAAGGAGATTTTACTCGTTGGTGTCAATTAGGCGGTCTGTGGGCTTTTGT 32702 Query 161987 GGCACTCCATGGTGCCTTCGCCCTAATTGGATTCATGCTCCGTCAGTTTGAACTGGCACG 162046 || ||||| || || ||||| |||| || || ||| | ||||| |||||||| || || Sbjct 32703 TGCTCTCCACGGCGCTTTCGCATTAATAGGTTTTATGTTACGTCAATTTGAACTTGCTCG 32762 Query 162047 TCTTATTGGTATCCGTCCCTACAATGCTATTGCGTTCTCTGGTCCTATTGCTGTTTTTGT 162106 || | || || || ||||| || || ||||||||||| |||||||||||||| Sbjct 32763 ATCCGTTCAATTGCGACCTTATAATGCAATCGCATTCTCTGGTCCAATTGCTGTTTTTGT 32822 Query 162107 CAGCGTCTTCCTTATCTACCCATTGGGTCAGTCCAGTTGGTTTTTCGCTCCGTCCTTTGG 162166 |||||||| || || ||| ||||||| || ||||||| || || || ||||| Sbjct 32823 TTCTGTCTTCCTAATTTATCCACTGGGTCAATCTGGTTGGTTCTTTGCGCCTAGTTTTGG 32882 Query 162167 GGTGGCAGCAATCTTTAGATTCCTGTTGTTTCTTCAAGGATTCCATAACTGGACCCTGAA 162226 || || || || ||| ||||| | | ||| | ||||| || ||||| ||||| |||| Sbjct 32883 TGTAGCGGCTATATTTCGATTCATCCTCTTTTTCCAAGGGTTTCATAATTGGACATTGAA 32942 Query 162227 CCCCTTCCATATGATGGGAGTTGCTGGTATACTAGGTGGAGCACTTCTATCTGCTATTCA 162286 ||| || |||||||||||||| || ||| |||| || | || || |||| |||||||| Sbjct 32943 CCCATTTCATATGATGGGAGTCGCCGGTGTACTGGGCGCCGCTCTGCTATGCGCTATTCA 33002 Query 162287 CGGAGTCACAGTTGAAAATACATTATACGAGGATGGAGAACAAGCAAACACCTTTAAGGC 162346 || | || || |||||||| |||| || ||||| || ||||| || || || Sbjct 33003 TGGTGCTACTGTAGAAAATACTTTATTTGAAGATGGTGATGGTGCAAATACATTCCGTGC 33062 Query 162347 GTTTGATTCGACACAGGAGGAAGAGACTTATTCTATGGTCACTGCAAACCGCTTCTGGTC 162406 ||| | | || || | ||||| |||||||| |||||||| || |||||||| ||||| Sbjct 33063 TTTTAACCCAACTCAAGCTGAAGAAACTTATTCAATGGTCACCGCTAACCGCTTTTGGTC 33122 Query 162407 GCAGATCTTCGGTATTGCGTTTTCTAACAAGCGGTGGCTTCATTTTTTCATGTTGTTTGT 162466 || ||||| || |||| ||||| || || || ||| | ||||| || ||||| ||||| Sbjct 33123 ACAAATCTTTGGGGTTGCTTTTTCCAATAAACGTTGGTTACATTTCTTTATGTTATTTGT 33182 Query 162467 GCCTGTTATGGGTCTATGGACATCCTCTATTGGCATTATTGGTCTTGCTCTCAACCTTCG 162526 || || | ||| |||||| || |||| | | || || ||| | ||||| || Sbjct 33183 ACCGGTAACTGGTTTATGGATGAGTGCTCTTGGAGTAGTCGGCCTAGCTTTGAACCTACG 33242 Query 162527 TGCTTACGATTTCGTGAGTCAGGAGATCAGAGCAGCAGAAGATCCTGAGTTTGAAACGTT 162586 ||| || || ||||| ||||| ||| | ||||| |||||||| || ||||| || || Sbjct 33243 TGCCTATGACTTCGTTTCCCAGGAAATCCGTGCAGCGGAAGATCCGGAATTTGAGACTTT 33302 Query 162587 CTACACTAAGAACATTCTGCTCAATGAAGGACTACGTGCATGGTTAGCACCTGCCGACCA 162646 ||| ||||| || ||||| | || ||||| | ||||| ||| | || || || || Sbjct 33303 CTATACTAAAAATATTCTTTTAAACGAAGGTATTCGTGCTTGGATGGCGGCTCAAGATCA 33362 Query 162647 ACCCCATGAGAACTTTATCTTCCCAGAAGAAGTTCTTCCTAGAGGCAACGCCCTTTAAT 162705 || ||||| ||| |||| ||||| || || ||||| || | || ||||| ||||||| Sbjct 33363 GCCTCATGAAAACCTTATATTCCCTGAGGAGGTTCTACCACGTGGAAACGCTCTTTAAT 33421 >seq218717 Length=448 Score = 132 bits (146), Expect = 5e-26 Identities = 162/220 (74%), Gaps = 1/220 (0%) Strand=Plus/Minus Query 160287 TATATGGGACGTGAGTGGGAACTTTCATACCGTTTAGGTATGCGCCCCTGGATCTGTGTA 160346 |||||| | ||||||||||||||| | || | |||||||| || ||||| ||| Sbjct 226 TATATGAGTCGTGAGTGGGAACTTAGTTTATGTCTGGGTATGCGTCCTTGGATTGTTGTT 167 Query 160347 GCATATTCTGCTCCAG-TCGCTGCAGCATCTGCTGTATTCCTCGTATATCCTTTCGGTCA 160405 |||||||| ||||| | | || || || || ||| ||| | | ||||| | ||||| Sbjct 166 GCATATTCAGCTCCTGTTTGCAGCTGCTATTGTTGTTTTCTTGATTTATCCAATTGGTCA 107 Query 160406 AGGTTCTTTCTCCGATGCTATGCCTCTTGGTATCTCTGGTACTTTTAACTACATGCTTGT 160465 ||| ||| | ||| ||||||||| || |||||| ||||||| |||| || |||| Sbjct 106 AGGAAGTTTTTTTAATGGTATGCCTCTAGGAATCTCTTGTACTTTCAACTTTATTATTGT 47 Query 160466 ATTCCAAGCAGAACACAATATCCTTATGCATCCGTTCCAC 160505 |||||| || || ||||| || |||||||| || || ||| Sbjct 46 ATTCCAGGCTGAGCACAACATTCTTATGCACCCATTTCAC 7 >seq180749 Length=15184 Score = 104 bits (114), Expect = 3e-17 Identities = 125/170 (74%), Gaps = 0/170 (0%) Strand=Plus/Plus Query 161135 GATGCAGCAGAAGAGGCAGGAGTTGATATTAACTATTCTTGTCGTGCTGGTGCTTGCTCT 161194 || ||||| ||||| |||||| | ||| | || ||||| || ||||| | || ||| Sbjct 10964 GACGCAGCTGAAGAAGCAGGAATCGATTTGCCTTACTCTTGCCGCTCTGGTTCATGTTCT 11023 Query 161195 TCCTGTGCAGGTAAAATTATTTCAGGTACAGTAGACCAGTCTGACCAGTCCTTCTTGGAT 161254 ||||||||||||| ||| || || || || || |||||||||||| ||| | ||| Sbjct 11024 AGCTGTGCAGGTAAAGTTAAGTCTGGAACTGTTGATCAGTCTGACCAGAGTTTCCTCGAT 11083 Query 161255 GATGACCAGATTGAATCTGGATTCCTTTTGACATGTGTTGCATATCCTAC 161304 ||||| ||||||| ||||| || | || |||| ||| |||||||| Sbjct 11084 GATGATCAGATTGCTGAAGGATTTGTTCTCACTTGTGCTGCTTATCCTAC 11133 >seq116136 Length=90299 Score = 84.2 bits (92), Expect = 2e-11 Identities = 55/61 (90%), Gaps = 0/61 (0%) Strand=Plus/Plus Query 157439 GTAGCTCAGATGGATAGAGCAACTGCCTTCTAAGCAGTCGGTCGCAGGTTCGAGTCCTGC 157498 ||||||||| ||||||||||| |||||||||||| || ||||||||||||||| ||||| Sbjct 84518 GTAGCTCAGTTGGATAGAGCACCTGCCTTCTAAGTAGGTGGTCGCAGGTTCGAGCCCTGC 84577 Query 157499 C 157499 | Sbjct 84578 C 84578 >seq121921 Length=447 Score = 82.4 bits (90), Expect = 9e-11 Identities = 56/63 (89%), Gaps = 0/63 (0%) Strand=Plus/Minus Query 157437 CAGTAGCTCAGATGGATAGAGCAACTGCCTTCTAAGCAGTCGGTCGCAGGTTCGAGTCCT 157496 |||||||||||| || ||||||| |||| || ||||||| ||||||||||||||||||| Sbjct 140 CAGTAGCTCAGAAGGTTAGAGCATCTGCTTTGTAAGCAGAAGGTCGCAGGTTCGAGTCCT 81 Query 157497 GCC 157499 ||| Sbjct 80 GCC 78 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 557635060813600