Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Arabis_20nordmanniana_20[genbank_20GCA_5F001484925.1_202016-01-04]
267,228 sequences; 342,306,570 total letters
Query= NC_026924.1
Length=174885
Score E
Sequences producing significant alignments: (Bits) Value
seq28607 587 8e-163
seq218717 132 5e-26
seq180749 104 3e-17
seq116136 84.2 2e-11
seq121921 82.4 9e-11
>seq28607
Length=83266
Score = 587 bits (650), Expect = 8e-163
Identities = 703/952 (74%), Gaps = 2/952 (0%)
Strand=Plus/Minus
Query 160002 GGTTGGTTCGGCGTACTGATGATTCCAACTCTGTTGGCAGCAACCATCTGTTTCATCGTC 160061
|| ||||| || || ||||||| || || | ||| | ||||| | ||| || ||
Sbjct 1460 GGATGGTTTGGTGTTTTGATGATCCCTACCTTATTGACCGCAACTTCCGTTTTTATTATC 1401
Query 160062 GCCTTCGTCGCTGCTCCCCCTGTGGACATCGACGGCATCCGTGAACCCGTCGCTGGTTCA 160121
|| ||| | |||||||| || || || || || || || |||||||| || |||| ||
Sbjct 1400 GCATTCATTGCTGCTCCTCCAGTAGATATTGATGGTATTCGTGAACCTGTTTCTGGATCT 1341
Query 160122 CTCATGTATGGTAACAACATCATCTCTGGTGCAGTTGTTCCATCTTCCAACGCAATTGGT 160181
|| | || || ||||| || || || ||||| || |||| |||| || ||||||
Sbjct 1340 CTTCTTTACGGAAACAATATTATTTCAGGTGCCATTATTCCTACTTCTGCAGCTATTGGT 1281
Query 160182 CTTCACTTCTATCCCATCTGGGAAGCCGCATCACTTGATGAGTGGCTGTATAACGGTGGT 160241
| || || || || ||||||||||| ||||| ||||||| ||||| || ||||| |||
Sbjct 1280 TTGCATTTTTACCCGATCTGGGAAGCTGCATCCGTTGATGAATGGCTATACAACGGCGGT 1221
Query 160242 CCTTTCCAACTCGTAGTATTTCACTTCCTTATCGGCATCTATGCATATATGGGACGTGAG 160301
|||| |||| | || | ||||| | | || | | |||||||| ||||||
Sbjct 1220 CCTTATGAACTAATTGTTCTACACTTTTTACTTGGTGTAGCTTGTTATATGGGTCGTGAG 1161
Query 160302 TGGGAACTTTCATACCGTTTAGGTATGCGCCCCTGGATCTGTGTAGCATATTCTGCTCCA 160361
||||||||| | |||| | |||||||| || ||||| ||| |||||||| |||||
Sbjct 1160 TGGGAACTTAGTTTCCGTCTGGGTATGCGTCCTTGGATTGCTGTTGCATATTCAGCTCCT 1101
Query 160362 GTCGCTGCAGCATCTGCTGTATTCCTCGTATATCCTTTCGGTCAAGGTTCTTTCTCCGAT 160421
|| || || ||| ||||||| ||| | | || || | |||||||| ||| || |||
Sbjct 1100 GTTGCAGCTGCAACTGCTGTTTTCTTGATCTACCCAATTGGTCAAGGAAGTTTTTCTGAT 1041
Query 160422 GCTATGCCTCTTGGTATCTCTGGTACTTTTAACTACATGCTTGTATTCCAAGCAGAACAC 160481
| ||||||||| || |||||||||||||| |||| ||| |||||||||| || || |||
Sbjct 1040 GGTATGCCTCTAGGAATCTCTGGTACTTTCAACTTTATGATTGTATTCCAGGCTGAGCAC 981
Query 160482 AATATCCTTATGCATCCGTTCCACATGCTCGGCGTTGCTGGGGTATTCGGTGGATCTTTG 160541
|| || |||||||| || || |||||| | || || ||||| |||||||| || || |
Sbjct 980 AACATTCTTATGCACCCATTTCACATGTTAGGTGTAGCTGGTGTATTCGGCGGCTCCCTA 921
Query 160542 TTCTCTGCTATGCACGGAAGTCTCGTTACTTCCTCACTCGTTC-GTGAAACGACTGAAAC 160600
|| ||||||||| || | || ||||| | | | || | ||||| || ||||
Sbjct 920 TTTAGTGCTATGCATGGTTCCTTGGTAACTTC-TAGTTTGATCAGGGAAACCACAGAAAA 862
Query 160601 AGAGTCACAGAACTACGGTTATAAGTTCGGTCAAGAGGAAGAGACCTACAACATCGTCGC 160660
|| || || | ||||| || ||||| ||||| ||||| || |||||||| || ||
Sbjct 861 TGAATCTGCTAATGAAGGTTACAAATTCGGACAAGAAGAAGAAACTTACAACATTGTAGC 802
Query 160661 AGCCCATGGTTACTTCGGTCGTTTGATCTTCCAATATGCATCATTCAACAACTCCCGTTC 160720
|| |||||||| || || || ||||||||||||||||| |||||||| || |||||
Sbjct 801 TGCTCATGGTTATTTTGGCCGATTGATCTTCCAATATGCTAGTTTCAACAATTCTCGTTC 742
Query 160721 ACTTCACTTCTTCCTGGCAGCATGGCCTGTAGTCGGAATCTGGTTCACTGCTCTTGGTGT 160780
| || |||||| | || || ||||| ||||| || || ||||| |||||| | ||| |
Sbjct 741 TTTACATTTCTTCTTAGCGGCTTGGCCGGTAGTAGGTATTTGGTTTACTGCTTTAGGTAT 682
Query 160781 TAGCACCATGGCATTCAACCTCAACGGTTTCAACTTCAACCAGTCCATCCTCGATGGTCA 160840
|||||||||||| |||||||| || |||||||| |||||||| || | | ||| ||||
Sbjct 681 TAGCACCATGGCTTTCAACCTAAATGGTTTCAATTTCAACCAATCAGTAGTTGATAGTCA 622
Query 160841 AGGTCGTGTACTGAACACCTGGGCAGACGTACTGAATCGTGCTGGTCTTGGTATGGAAGT 160900
||| ||||| | || || ||||| || | | || |||||| ||||||||||||||
Sbjct 621 AGGACGTGTTATTAATACTTGGGCTGATATTATTAACCGTGCTAACCTTGGTATGGAAGT 562
Query 160901 TATGCATGAGCGTAACGCACACAACTTCCCACTCGACCTCGCTGCTGCTGAG 160952
||||||||| ||||| || ||||||||||| || ||||| ||||||| ||||
Sbjct 561 TATGCATGAACGTAATGCTCACAACTTCCCTCTAGACCTAGCTGCTGTTGAG 510
Score = 506 bits (560), Expect = 2e-138
Identities = 725/1019 (71%), Gaps = 2/1019 (0%)
Strand=Plus/Plus
Query 161688 TTTGACATACTCGACGACTGGCTTAAACGGGATCGTTTCGTTTTTGTTGGCTGGTCTGGA 161747
||||| || | || |||||| | |||| || ||||||||||| || ||||||||
Sbjct 32404 TTTGATATTATGGATGACTGGTTACGGAGGGACCGCTTCGTTTTTGTAGGTTGGTCTGGT 32463
Query 161748 CTTCTTCTTCTTCCCACTGCTTATCTTGCTATTGGCGGTTGGCTTACTGGCACAACTTTC 161807
|| | || |||| ||| ||| | ||| | || |||||| | || || ||||| ||
Sbjct 32464 CTATTGCTCTTTCCTTGTGCCTATTTCGCTTTAGGGGGTTGGTTCACAGGTACAACCTTT 32523
Query 161808 GCAACGAGCTGGTATACCCATGGTCTCGCTAGTTCCTATCTTGAGGGTGCAAACTTTCTT 161867
| ||| |||||||| ||||| | |||||||||||| | || ||| || ||| |
Sbjct 32524 GTAACTTCATGGTATACTCATGGATTGGCTAGTTCCTATTTAGAAGGTTGCAATTTTTTA 32583
Query 161868 ACAGCGTCAGTTAGCACTCCAGCTGACGCTATGGGTCATTCTCTTCTTCTT-CTCTGGGG 161926
|| || | ||| ||||| ||| | | | | |||||| || || || || |||||
Sbjct 32584 ACCGCTGCCGTTTCGACTCCTGCTAATAGTTTAGCGCATTCT-TTGTTGTTACTGTGGGG 32642
Query 161927 TCCTGAGGCTCAAGGGGATTTCGTCCGCTGGGTCCAACTTGGGGGACTCTGGAATTTTGT 161986
|||||| || ||||| ||||| || ||| ||| | || || || ||| ||||||
Sbjct 32643 TCCTGAAGCACAAGGAGATTTTACTCGTTGGTGTCAATTAGGCGGTCTGTGGGCTTTTGT 32702
Query 161987 GGCACTCCATGGTGCCTTCGCCCTAATTGGATTCATGCTCCGTCAGTTTGAACTGGCACG 162046
|| ||||| || || ||||| |||| || || ||| | ||||| |||||||| || ||
Sbjct 32703 TGCTCTCCACGGCGCTTTCGCATTAATAGGTTTTATGTTACGTCAATTTGAACTTGCTCG 32762
Query 162047 TCTTATTGGTATCCGTCCCTACAATGCTATTGCGTTCTCTGGTCCTATTGCTGTTTTTGT 162106
|| | || || || ||||| || || ||||||||||| ||||||||||||||
Sbjct 32763 ATCCGTTCAATTGCGACCTTATAATGCAATCGCATTCTCTGGTCCAATTGCTGTTTTTGT 32822
Query 162107 CAGCGTCTTCCTTATCTACCCATTGGGTCAGTCCAGTTGGTTTTTCGCTCCGTCCTTTGG 162166
|||||||| || || ||| ||||||| || ||||||| || || || |||||
Sbjct 32823 TTCTGTCTTCCTAATTTATCCACTGGGTCAATCTGGTTGGTTCTTTGCGCCTAGTTTTGG 32882
Query 162167 GGTGGCAGCAATCTTTAGATTCCTGTTGTTTCTTCAAGGATTCCATAACTGGACCCTGAA 162226
|| || || || ||| ||||| | | ||| | ||||| || ||||| ||||| ||||
Sbjct 32883 TGTAGCGGCTATATTTCGATTCATCCTCTTTTTCCAAGGGTTTCATAATTGGACATTGAA 32942
Query 162227 CCCCTTCCATATGATGGGAGTTGCTGGTATACTAGGTGGAGCACTTCTATCTGCTATTCA 162286
||| || |||||||||||||| || ||| |||| || | || || |||| ||||||||
Sbjct 32943 CCCATTTCATATGATGGGAGTCGCCGGTGTACTGGGCGCCGCTCTGCTATGCGCTATTCA 33002
Query 162287 CGGAGTCACAGTTGAAAATACATTATACGAGGATGGAGAACAAGCAAACACCTTTAAGGC 162346
|| | || || |||||||| |||| || ||||| || ||||| || || ||
Sbjct 33003 TGGTGCTACTGTAGAAAATACTTTATTTGAAGATGGTGATGGTGCAAATACATTCCGTGC 33062
Query 162347 GTTTGATTCGACACAGGAGGAAGAGACTTATTCTATGGTCACTGCAAACCGCTTCTGGTC 162406
||| | | || || | ||||| |||||||| |||||||| || |||||||| |||||
Sbjct 33063 TTTTAACCCAACTCAAGCTGAAGAAACTTATTCAATGGTCACCGCTAACCGCTTTTGGTC 33122
Query 162407 GCAGATCTTCGGTATTGCGTTTTCTAACAAGCGGTGGCTTCATTTTTTCATGTTGTTTGT 162466
|| ||||| || |||| ||||| || || || ||| | ||||| || ||||| |||||
Sbjct 33123 ACAAATCTTTGGGGTTGCTTTTTCCAATAAACGTTGGTTACATTTCTTTATGTTATTTGT 33182
Query 162467 GCCTGTTATGGGTCTATGGACATCCTCTATTGGCATTATTGGTCTTGCTCTCAACCTTCG 162526
|| || | ||| |||||| || |||| | | || || ||| | ||||| ||
Sbjct 33183 ACCGGTAACTGGTTTATGGATGAGTGCTCTTGGAGTAGTCGGCCTAGCTTTGAACCTACG 33242
Query 162527 TGCTTACGATTTCGTGAGTCAGGAGATCAGAGCAGCAGAAGATCCTGAGTTTGAAACGTT 162586
||| || || ||||| ||||| ||| | ||||| |||||||| || ||||| || ||
Sbjct 33243 TGCCTATGACTTCGTTTCCCAGGAAATCCGTGCAGCGGAAGATCCGGAATTTGAGACTTT 33302
Query 162587 CTACACTAAGAACATTCTGCTCAATGAAGGACTACGTGCATGGTTAGCACCTGCCGACCA 162646
||| ||||| || ||||| | || ||||| | ||||| ||| | || || || ||
Sbjct 33303 CTATACTAAAAATATTCTTTTAAACGAAGGTATTCGTGCTTGGATGGCGGCTCAAGATCA 33362
Query 162647 ACCCCATGAGAACTTTATCTTCCCAGAAGAAGTTCTTCCTAGAGGCAACGCCCTTTAAT 162705
|| ||||| ||| |||| ||||| || || ||||| || | || ||||| |||||||
Sbjct 33363 GCCTCATGAAAACCTTATATTCCCTGAGGAGGTTCTACCACGTGGAAACGCTCTTTAAT 33421
>seq218717
Length=448
Score = 132 bits (146), Expect = 5e-26
Identities = 162/220 (74%), Gaps = 1/220 (0%)
Strand=Plus/Minus
Query 160287 TATATGGGACGTGAGTGGGAACTTTCATACCGTTTAGGTATGCGCCCCTGGATCTGTGTA 160346
|||||| | ||||||||||||||| | || | |||||||| || ||||| |||
Sbjct 226 TATATGAGTCGTGAGTGGGAACTTAGTTTATGTCTGGGTATGCGTCCTTGGATTGTTGTT 167
Query 160347 GCATATTCTGCTCCAG-TCGCTGCAGCATCTGCTGTATTCCTCGTATATCCTTTCGGTCA 160405
|||||||| ||||| | | || || || || ||| ||| | | ||||| | |||||
Sbjct 166 GCATATTCAGCTCCTGTTTGCAGCTGCTATTGTTGTTTTCTTGATTTATCCAATTGGTCA 107
Query 160406 AGGTTCTTTCTCCGATGCTATGCCTCTTGGTATCTCTGGTACTTTTAACTACATGCTTGT 160465
||| ||| | ||| ||||||||| || |||||| ||||||| |||| || ||||
Sbjct 106 AGGAAGTTTTTTTAATGGTATGCCTCTAGGAATCTCTTGTACTTTCAACTTTATTATTGT 47
Query 160466 ATTCCAAGCAGAACACAATATCCTTATGCATCCGTTCCAC 160505
|||||| || || ||||| || |||||||| || || |||
Sbjct 46 ATTCCAGGCTGAGCACAACATTCTTATGCACCCATTTCAC 7
>seq180749
Length=15184
Score = 104 bits (114), Expect = 3e-17
Identities = 125/170 (74%), Gaps = 0/170 (0%)
Strand=Plus/Plus
Query 161135 GATGCAGCAGAAGAGGCAGGAGTTGATATTAACTATTCTTGTCGTGCTGGTGCTTGCTCT 161194
|| ||||| ||||| |||||| | ||| | || ||||| || ||||| | || |||
Sbjct 10964 GACGCAGCTGAAGAAGCAGGAATCGATTTGCCTTACTCTTGCCGCTCTGGTTCATGTTCT 11023
Query 161195 TCCTGTGCAGGTAAAATTATTTCAGGTACAGTAGACCAGTCTGACCAGTCCTTCTTGGAT 161254
||||||||||||| ||| || || || || || |||||||||||| ||| | |||
Sbjct 11024 AGCTGTGCAGGTAAAGTTAAGTCTGGAACTGTTGATCAGTCTGACCAGAGTTTCCTCGAT 11083
Query 161255 GATGACCAGATTGAATCTGGATTCCTTTTGACATGTGTTGCATATCCTAC 161304
||||| ||||||| ||||| || | || |||| ||| ||||||||
Sbjct 11084 GATGATCAGATTGCTGAAGGATTTGTTCTCACTTGTGCTGCTTATCCTAC 11133
>seq116136
Length=90299
Score = 84.2 bits (92), Expect = 2e-11
Identities = 55/61 (90%), Gaps = 0/61 (0%)
Strand=Plus/Plus
Query 157439 GTAGCTCAGATGGATAGAGCAACTGCCTTCTAAGCAGTCGGTCGCAGGTTCGAGTCCTGC 157498
||||||||| ||||||||||| |||||||||||| || ||||||||||||||| |||||
Sbjct 84518 GTAGCTCAGTTGGATAGAGCACCTGCCTTCTAAGTAGGTGGTCGCAGGTTCGAGCCCTGC 84577
Query 157499 C 157499
|
Sbjct 84578 C 84578
>seq121921
Length=447
Score = 82.4 bits (90), Expect = 9e-11
Identities = 56/63 (89%), Gaps = 0/63 (0%)
Strand=Plus/Minus
Query 157437 CAGTAGCTCAGATGGATAGAGCAACTGCCTTCTAAGCAGTCGGTCGCAGGTTCGAGTCCT 157496
|||||||||||| || ||||||| |||| || ||||||| |||||||||||||||||||
Sbjct 140 CAGTAGCTCAGAAGGTTAGAGCATCTGCTTTGTAAGCAGAAGGTCGCAGGTTCGAGTCCT 81
Query 157497 GCC 157499
|||
Sbjct 80 GCC 78
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 557635060813600
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