Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Arabis_20nordmanniana_20[genbank_20GCA_5F001484925.1_202016-01-04]
267,228 sequences; 342,306,570 total letters
Query= NC_026926.1
Length=192108
Score E
Sequences producing significant alignments: (Bits) Value
seq28607 574 6e-159
seq218717 118 1e-21
seq180749 86.0 8e-12
>seq28607
Length=83266
Score = 574 bits (636), Expect = 6e-159
Identities = 698/951 (73%), Gaps = 0/951 (0%)
Strand=Plus/Minus
Query 181023 GGTTGGTTCGGCGTACTGATGATTCCAACTCTGTTGGCAGCAACTATCTGTTTCATCGTC 181082
|| ||||| || || ||||||| || || | ||| | |||||| | ||| || ||
Sbjct 1460 GGATGGTTTGGTGTTTTGATGATCCCTACCTTATTGACCGCAACTTCCGTTTTTATTATC 1401
Query 181083 GCCTTCGTCGCTGCTCCCCCTGTGGACATCGACGGCATCCGTGAACCCGTCGCTGGTTCA 181142
|| ||| | |||||||| || || || || || || || |||||||| || |||| ||
Sbjct 1400 GCATTCATTGCTGCTCCTCCAGTAGATATTGATGGTATTCGTGAACCTGTTTCTGGATCT 1341
Query 181143 CTCATGTATGGTAACAACATCATCTCTGGTGCAGTTGTTCCATCTTCCAACGCAATTGGT 181202
|| | || || ||||| || || || ||||| || |||| |||| || ||||||
Sbjct 1340 CTTCTTTACGGAAACAATATTATTTCAGGTGCCATTATTCCTACTTCTGCAGCTATTGGT 1281
Query 181203 CTTCACTTCTATCCCATCTGGGAAGCCGCATCACTTGATGAGTGGCTGTATAACGGTGGT 181262
| || || || || ||||||||||| ||||| ||||||| ||||| || ||||| |||
Sbjct 1280 TTGCATTTTTACCCGATCTGGGAAGCTGCATCCGTTGATGAATGGCTATACAACGGCGGT 1221
Query 181263 CCTTTCCAACTCGTAGTCTTTCACTTCCTTATCGGCATTTATGCATACATGGGACGTGAA 181322
|||| |||| | || | ||||| | | || | | || ||||| |||||
Sbjct 1220 CCTTATGAACTAATTGTTCTACACTTTTTACTTGGTGTAGCTTGTTATATGGGTCGTGAG 1161
Query 181323 TGGGAACTCTCTTACCGCTTAGGTATGCGCCCCTGGATCTGTGTTGCATACTCTGCTCCA 181382
|||||||| || ||| | |||||||| || ||||| ||||||||| || |||||
Sbjct 1160 TGGGAACTTAGTTTCCGTCTGGGTATGCGTCCTTGGATTGCTGTTGCATATTCAGCTCCT 1101
Query 181383 GTCGCAGCAGCATCTGCTGTATTCCTAGTCTATCCTTTCGGTCAAGGTTCTTTCTCTGAC 181442
|| ||||| ||| ||||||| ||| | |||| || | |||||||| ||| |||||
Sbjct 1100 GTTGCAGCTGCAACTGCTGTTTTCTTGATCTACCCAATTGGTCAAGGAAGTTTTTCTGAT 1041
Query 181443 GCAATGCCACTTGGCATCTCTGGTACATTCAACTACATGCTTGTTTTCCAAGCAGAGCAC 181502
| ||||| || || ||||||||||| ||||||| ||| |||| ||||| || ||||||
Sbjct 1040 GGTATGCCTCTAGGAATCTCTGGTACTTTCAACTTTATGATTGTATTCCAGGCTGAGCAC 981
Query 181503 AACATTCTGATGCATCCCTTCCACATGTTGGGTGTCGCAGGTGTATTTGGTGGTTCACTG 181562
|||||||| ||||| || || |||||||| ||||| || |||||||| || || || ||
Sbjct 980 AACATTCTTATGCACCCATTTCACATGTTAGGTGTAGCTGGTGTATTCGGCGGCTCCCTA 921
Query 181563 TTCAGTGCAATGCACGGTTCTTTGGTTACATCTTCACTCGTCCGTGAGACGACTGAAACT 181622
|| ||||| ||||| ||||| ||||| || ||| | || | || || || |||| |
Sbjct 920 TTTAGTGCTATGCATGGTTCCTTGGTAACTTCTAGTTTGATCAGGGAAACCACAGAAAAT 861
Query 181623 GAGTCACAGAACTATGGTTACAAGTTCGGACAAGAAGAAGAGACATACAACATCGTCGCC 181682
|| || || | |||||||| ||||||||||||||||| || |||||||| || ||
Sbjct 860 GAATCTGCTAATGAAGGTTACAAATTCGGACAAGAAGAAGAAACTTACAACATTGTAGCT 801
Query 181683 GCCCACGGTTACTTTGGTCGCTTGATCTTCCAATATGCTTCATTCAACAACTCACGTTCA 181742
|| || ||||| ||||| || |||||||||||||||||| |||||||| || |||||
Sbjct 800 GCTCATGGTTATTTTGGCCGATTGATCTTCCAATATGCTAGTTTCAACAATTCTCGTTCT 741
Query 181743 CTGCACTTCTTCCTCGCAGCATGGCCTGTAGTTGGAATCTGGTTCACCGCACTGGGCGTA 181802
| || |||||| | || || ||||| ||||| || || ||||| || || | || |
Sbjct 740 TTACATTTCTTCTTAGCGGCTTGGCCGGTAGTAGGTATTTGGTTTACTGCTTTAGGTATT 681
Query 181803 AGCACCATGGCATTTAACCTCAATGGATTCAACTTCAACCAGTCTATCCTCGACGGACAA 181862
||||||||||| || ||||| ||||| ||||| |||||||| || | | || | |||
Sbjct 680 AGCACCATGGCTTTCAACCTAAATGGTTTCAATTTCAACCAATCAGTAGTTGATAGTCAA 621
Query 181863 GGACGTGTCCTCAACACCTGGGCAGACGTGCTCAACCGTGCCGGTCTCGGCATGGAAGTC 181922
|||||||| | || || ||||| || | | |||||||| || || ||||||||
Sbjct 620 GGACGTGTTATTAATACTTGGGCTGATATTATTAACCGTGCTAACCTTGGTATGGAAGTT 561
Query 181923 ATGCACGAGCGCAACGCGCACAACTTCCCGCTTGATCTTGCAGCAGCTGAG 181973
||||| || || || || ||||||||||| || || || || || | ||||
Sbjct 560 ATGCATGAACGTAATGCTCACAACTTCCCTCTAGACCTAGCTGCTGTTGAG 510
Score = 517 bits (572), Expect = 1e-141
Identities = 720/1006 (72%), Gaps = 6/1006 (1%)
Strand=Plus/Plus
Query 182371 TGGACGACTGGGTTAAACGGGATCGCTTTGTCTTTGTGGGTTGGTCTGGACTCCTACTTC 182430
|||| |||||| | |||| ||||| || ||||| ||||||||||| || | ||
Sbjct 32414 TGGATGACTGGTTACGGAGGGACCGCTTCGTTTTTGTAGGTTGGTCTGGTCTATTGCTCT 32473
Query 182431 TTCCCACTGCTTATCTTGCCATTGGCGGTTGGCTTACTGGGACAGCTTTTGTTACGAGTT 182490
|||| ||| ||| | || | || |||||| | || || ||| | ||||| || |
Sbjct 32474 TTCCTTGTGCCTATTTCGCTTTAGGGGGTTGGTTCACAGGTACAACCTTTGTAACTTCAT 32533
Query 182491 GGTACACCCACGGTCTTGCTTCTTCCTATCTTGAAGGTGCTAACTTTCTTACGGCAGCTG 182550
|||| || || || | ||| ||||||| | |||||| || ||| | || || || |
Sbjct 32534 GGTATACTCATGGATTGGCTAGTTCCTATTTAGAAGGTTGCAATTTTTTAACCGCTGCCG 32593
Query 182551 TCTCGACGCCTGCTGATGCTATGGGTCATTCTCTTCTTCTACTTTGGGGTCCTGAGTCTC 182610
| ||||| |||||| || | | | |||||| | | |||| ||||||||||| | |
Sbjct 32594 TTTCGACTCCTGCTAATAGTTTAGCGCATTCTTTGTTGTTACTGTGGGGTCCTGAAGCAC 32653
Query 182611 AGGGGAATTTCCAGCGGTGGTGCCAACTTGGGGGACTCTGGAATTTCGTGGCTCTCCACG 182670
| || |||| || ||||| ||| | || || || ||| ||| || ||||||||||
Sbjct 32654 AAGGAGATTTTACTCGTTGGTGTCAATTAGGCGGTCTGTGGGCTTTTGTTGCTCTCCACG 32713
Query 182671 GTGCCTTCGCTCTCATTGGTTTCATGCTTAGGCAATTTGAACTTGCTCGCCTGATTGGAA 182730
| || ||||| | || ||||| ||| | | ||||||||||||||||| || |
Sbjct 32714 GCGCTTTCGCATTAATAGGTTTTATGTTACGTCAATTTGAACTTGCTCGATCCGTTCAAT 32773
Query 182731 TCAGACCTTACAATGCGATTGCTTTTTCTGGTCCTATTGCTGTATTCGTCAGTGTGTTCC 182790
| ||||||| ||||| || || || |||||||| |||||||| || || ||| ||||
Sbjct 32774 TGCGACCTTATAATGCAATCGCATTCTCTGGTCCAATTGCTGTTTTTGTTTCTGTCTTCC 32833
Query 182791 TCATCTATCCTTTGGGACAGTCCTCTTGGTTTTTCGCGCCGTCCTTTGGTGTCGCGGCGA 182850
| || ||||| |||| || || |||||| || ||||| |||||||| ||||| |
Sbjct 32834 TAATTTATCCACTGGGTCAATCTGGTTGGTTCTTTGCGCCTAGTTTTGGTGTAGCGGCTA 32893
Query 182851 TCTTCAGGT---TCCTGTTGTTCCTTCAGGGTTTCCACAACTGGACACTCAACCCCTTCC 182907
| || | | |||| || |||| ||||||| || || |||||| | ||||| || |
Sbjct 32894 TATTTCGATTCATCCTCTTTTTCC--AAGGGTTT-CATAATTGGACATTGAACCCATTTC 32950
Query 182908 ATATGATGGGAGTTGCTGGTATACTGGGTGGAGCACTGCTCAGTGCTATCCATGGTGTCA 182967
||||||||||||| || ||| ||||||| | || ||||| | ||||| ||||||| |
Sbjct 32951 ATATGATGGGAGTCGCCGGTGTACTGGGCGCCGCTCTGCTATGCGCTATTCATGGTGCTA 33010
Query 182968 CAGTAGAGAATACCTTGTATGAAGATGGAGAACAGGCAAACACATTTAAAGCGTTCGATT 183027
| ||||| ||||| || | ||||||||| || ||||| ||||| || || |
Sbjct 33011 CTGTAGAAAATACTTTATTTGAAGATGGTGATGGTGCAAATACATTCCGTGCTTTTAACC 33070
Query 183028 CCACTCAGGAGGAGGAGACCTATTCGATGGTTACAGCGAATCGTTTTTGGTCACAAATCT 183087
| ||||| | || || || ||||| ||||| || || || || ||||||||||||||||
Sbjct 33071 CAACTCAAGCTGAAGAAACTTATTCAATGGTCACCGCTAACCGCTTTTGGTCACAAATCT 33130
Query 183088 TCGGGGTTGCGTTTAGCAATAAGCGTTGGTTGCACTTCTTTATGTTGTTTGTTCCTGTCA 183147
| |||||||| ||| |||||| |||||||| || ||||||||||| ||||| || || |
Sbjct 33131 TTGGGGTTGCTTTTTCCAATAAACGTTGGTTACATTTCTTTATGTTATTTGTACCGGTAA 33190
Query 183148 TGGGTCTTTGGGTCTCTTCTATTGGGATCATTGGGCTTGCTCTTAATCTTCGTGCTTATG 183207
||| | ||| | | || |||| | | || || ||| | || || ||||| ||||
Sbjct 33191 CTGGTTTATGGATGAGTGCTCTTGGAGTAGTCGGCCTAGCTTTGAACCTACGTGCCTATG 33250
Query 183208 ATTTTGTGAGTCAAGAGATTAGAGCAGCAGAAGATCCTGAGTTCGAGACGTTCTACACAA 183267
| || || || || || | ||||| |||||||| || || ||||| ||||| || |
Sbjct 33251 ACTTCGTTTCCCAGGAAATCCGTGCAGCGGAAGATCCGGAATTTGAGACTTTCTATACTA 33310
Query 183268 AGAACATCCTTCTCAATGAAGGACTACGTGCTTGGTTGGCACCTGCCGATCAACCACATG 183327
| || || ||| | || ||||| | ||||||||| |||| || ||||| || ||||
Sbjct 33311 AAAATATTCTTTTAAACGAAGGTATTCGTGCTTGGATGGCGGCTCAAGATCAGCCTCATG 33370
Query 183328 AAAACTTCATCTTCCCTGAAGAAGTTCTACCTAGAGGTAACGCACT 183373
||||| | || |||||||| || |||||||| | || ||||| ||
Sbjct 33371 AAAACCTTATATTCCCTGAGGAGGTTCTACCACGTGGAAACGCTCT 33416
>seq218717
Length=448
Score = 118 bits (130), Expect = 1e-21
Identities = 159/220 (72%), Gaps = 1/220 (0%)
Strand=Plus/Minus
Query 181308 TACATGGGACGTGAATGGGAACTCTCTTACCGCTTAGGTATGCGCCCCTGGATCTGTGTT 181367
|| ||| | ||||| |||||||| || | | |||||||| || ||||| ||||
Sbjct 226 TATATGAGTCGTGAGTGGGAACTTAGTTTATGTCTGGGTATGCGTCCTTGGATTGTTGTT 167
Query 181368 GCATACTCTGCTCCAGTC-GCAGCAGCATCTGCTGTATTCCTAGTCTATCCTTTCGGTCA 181426
||||| || ||||| || ||||| || || ||| ||| | | ||||| | |||||
Sbjct 166 GCATATTCAGCTCCTGTTTGCAGCTGCTATTGTTGTTTTCTTGATTTATCCAATTGGTCA 107
Query 181427 AGGTTCTTTCTCTGACGCAATGCCACTTGGCATCTCTGGTACATTCAACTACATGCTTGT 181486
||| ||| | | | | ||||| || || |||||| |||| ||||||| || ||||
Sbjct 106 AGGAAGTTTTTTTAATGGTATGCCTCTAGGAATCTCTTGTACTTTCAACTTTATTATTGT 47
Query 181487 TTTCCAAGCAGAGCACAACATTCTGATGCATCCCTTCCAC 181526
||||| || |||||||||||||| ||||| || || |||
Sbjct 46 ATTCCAGGCTGAGCACAACATTCTTATGCACCCATTTCAC 7
>seq180749
Length=15184
Score = 86.0 bits (94), Expect = 8e-12
Identities = 124/175 (71%), Gaps = 0/175 (0%)
Strand=Plus/Plus
Query 179483 TCCTTGACGCTGCTGAAGAAGCAGGTGTAGATATCAATTACTCTTGTCGTGCTGGTGCTT 179542
|||| ||||| |||||||||||||| | ||| | ||||||||| || ||||| | |
Sbjct 10959 TCCTCGACGCAGCTGAAGAAGCAGGAATCGATTTGCCTTACTCTTGCCGCTCTGGTTCAT 11018
Query 179543 GTTCATCTTGTGCTGGTAAATTAGAGAGTGGATCTGTTGATCAAAGCGATCAATCGTTTT 179602
|||| ||||| |||||| | || |||| |||||||||| || || ||
Sbjct 11019 GTTCTAGCTGTGCAGGTAAAGTTAAGTCTGGAACTGTTGATCAGTCTGACCAGAGTTTCC 11078
Query 179603 TGGATGACGATCAAATGGAGTCGGGATTTATTCTGACTTGCGTATCTTATCCTAC 179657
| ||||| ||||| || | |||||| |||| ||||| | ||||||||||
Sbjct 11079 TCGATGATGATCAGATTGCTGAAGGATTTGTTCTCACTTGTGCTGCTTATCCTAC 11133
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 612564562099840
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