Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Arabis_20nordmanniana_20[genbank_20GCA_5F001484925.1_202016-01-04] 267,228 sequences; 342,306,570 total letters Query= NC_026927.1 Length=228143 Score E Sequences producing significant alignments: (Bits) Value seq28607 556 2e-153 seq218717 87.8 3e-12 >seq28607 Length=83266 Score = 556 bits (616), Expect = 2e-153 Identities = 705/967 (73%), Gaps = 2/967 (0%) Strand=Plus/Minus Query 174495 AATCGTCTTTACGTCGGTTGGTTCGGTGTTCTAATGATTCCTACATTGTTAGCCGCAACT 174554 |||||||||||| | || ||||| |||||| | ||||| ||||| || || |||||||| Sbjct 1475 AATCGTCTTTACATTGGATGGTTTGGTGTTTTGATGATCCCTACCTTATTGACCGCAACT 1416 Query 174555 GTATGTTTCATTATCGCTTTCGTGGGTGCTCCCCCAGTGGACATCGACGGAATCCGTGAA 174614 ||| |||||||| ||| | | |||||| ||||| || || || || || |||||| Sbjct 1415 TCCGTTTTTATTATCGCATTCATTGCTGCTCCTCCAGTAGATATTGATGGTATTCGTGAA 1356 Query 174615 CCAGTAGCTGGTTCACTCATGTATGGAAACAACATCATCTCTGGTGCAGTTGTTCCTAGT 174674 || || |||| || || | || |||||||| || || || ||||| || |||||| | Sbjct 1355 CCTGTTTCTGGATCTCTTCTTTACGGAAACAATATTATTTCAGGTGCCATTATTCCTACT 1296 Query 174675 TCAAACGCAATCGGTCTACACTTCTACCCAATCTGGGAAGCAGCCACACTCGACGAATGG 174734 || || || ||| | || || ||||| ||||||||||| || | | || |||||| Sbjct 1295 TCTGCAGCTATTGGTTTGCATTTTTACCCGATCTGGGAAGCTGCATCCGTTGATGAATGG 1236 Query 174735 CTCTACAACGGTGGTCCTTTCCAACTAGTTGTCTTCCACTTCCTTATTGGTATCTACGCC 174794 || |||||||| ||||||| ||||| |||| | ||||| | ||||| | Sbjct 1235 CTATACAACGGCGGTCCTTATGAACTAATTGTTCTACACTTTTTACTTGGTGTAGCTTGT 1176 Query 174795 TATATGGGACGTGAGTGGGAACTCTCTTATCGTTTAGGTATGAGACCTTGGATCTGTGTA 174854 |||||||| |||||||||||||| || ||| | |||||| | |||||||| ||| Sbjct 1175 TATATGGGTCGTGAGTGGGAACTTAGTTTCCGTCTGGGTATGCGTCCTTGGATTGCTGTT 1116 Query 174855 GCATACTCTGCACCAGTTGCAGCAGCTTCAGCAGTATTCCTAGTCTATCCTTTCGGTCAA 174914 ||||| || || || |||||||| || | || || ||| | |||| || | |||||| Sbjct 1115 GCATATTCAGCTCCTGTTGCAGCTGCAACTGCTGTTTTCTTGATCTACCCAATTGGTCAA 1056 Query 174915 GGTTCATTCTCAGACGCGATGCCCTTGGGTATCTCTGGAACATTCAACTACATGTTGGTC 174974 || || || || | ||||| | || |||||||| || ||||||| ||| | || Sbjct 1055 GGAAGTTTTTCTGATGGTATGCCTCTAGGAATCTCTGGTACTTTCAACTTTATGATTGTA 996 Query 174975 TTCCAAGCAGAACATAACATCTTGATGCACCCCTTCCACATGTTGGGAGTCGCAGGTGTC 175034 ||||| || || || ||||| | |||||||| || |||||||| || || || ||||| Sbjct 995 TTCCAGGCTGAGCACAACATTCTTATGCACCCATTTCACATGTTAGGTGTAGCTGGTGTA 936 Query 175035 TTCGGTGGTTCATTGTTCTCAGCGATGCATGGTTCACTTGTTACCTCTTCACTTG-TCCG 175093 ||||| || || | || || ||||||||||| |||| || || | ||| || | Sbjct 935 TTCGGCGGCTCCCTATTTAGTGCTATGCATGGTTC-CTTGGTAACTTCTAGTTTGATCAG 877 Query 175094 TGAGACAACTGAAACTGAGTCACAGAACTATGGTTACAAGTTCGGCCAAGAAGAAGAGAC 175153 || || || |||| ||| || || | |||||||| ||||| ||||||||||| || Sbjct 876 GGAAACCACAGAAAATGAATCTGCTAATGAAGGTTACAAATTCGGACAAGAAGAAGAAAC 817 Query 175154 CTATAACATCGTGGCAGCCCATGGCTACTTCGGTCGTTTGATCTTCCAATACGCTTCATT 175213 || ||||| || || || ||||| || || || || |||||||||||||| ||| || Sbjct 816 TTACAACATTGTAGCTGCTCATGGTTATTTTGGCCGATTGATCTTCCAATATGCTAGTTT 757 Query 175214 CAACAACTCACGCTCACTCCACTTCTTCTTAGCCGCATGGCCAGTTGTGGGTATCTGGTT 175273 |||||| || || || | || ||||||||||| || ||||| || || ||||| ||||| Sbjct 756 CAACAATTCTCGTTCTTTACATTTCTTCTTAGCGGCTTGGCCGGTAGTAGGTATTTGGTT 697 Query 175274 CACCGCACTTGGTGTTTCCACAATGGCATTCAACCTCAATGGTTTCAACTTCAACCAGTC 175333 || || | ||| || ||| ||||| |||||||| ||||||||||| |||||||| || Sbjct 696 TACTGCTTTAGGTATTAGCACCATGGCTTTCAACCTAAATGGTTTCAATTTCAACCAATC 637 Query 175334 TGTTATCGACGGACAAGGTAGAGTATTGAACACCTGGGCGGATGTTCTTAACAGAGCTGG 175393 || | || | ||||| | || | || || ||||| ||| || ||||| | ||| Sbjct 636 AGTAGTTGATAGTCAAGGACGTGTTATTAATACTTGGGCTGATATTATTAACCGTGCTAA 577 Query 175394 TCTTGGGATGGAAGTAATGCATGAGAGAAATGCACACAACTTCCCACTAGATTTGGCAGC 175453 ||||| |||||||| |||||||| | ||||| ||||||||||| ||||| | || || Sbjct 576 CCTTGGTATGGAAGTTATGCATGAACGTAATGCTCACAACTTCCCTCTAGACCTAGCTGC 517 Query 175454 AGCTGAG 175460 | |||| Sbjct 516 TGTTGAG 510 Score = 470 bits (520), Expect = 2e-127 Identities = 709/1008 (70%), Gaps = 0/1008 (0%) Strand=Plus/Plus Query 175853 TGATATTTTGGAAGACTGGCTTCTCAGAGATAGGTTTATCTTTATTGGCTGGTCTGGATT 175912 ||||||| |||| |||||| | | || || | || | ||| | || |||||||| | Sbjct 32406 TGATATTATGGATGACTGGTTACGGAGGGACCGCTTCGTTTTTGTAGGTTGGTCTGGTCT 32465 Query 175913 ACTACTTCTTCCCACTGCTTATCTTGCCATTGGCGGCTGGCTTACTGGCACAACTTTTGT 175972 | | || |||| ||| ||| | || | || || ||| | || || ||||| ||||| Sbjct 32466 ATTGCTCTTTCCTTGTGCCTATTTCGCTTTAGGGGGTTGGTTCACAGGTACAACCTTTGT 32525 Query 175973 CACGAGTTGGTACACCCATGGTCTTGCTTCTTCCTATCTTGAGGGTGCTAACTTTCTCAC 176032 || ||||| || ||||| | ||| ||||||| | || ||| || ||| | || Sbjct 32526 AACTTCATGGTATACTCATGGATTGGCTAGTTCCTATTTAGAAGGTTGCAATTTTTTAAC 32585 Query 176033 AGCGGCTGTCTCGACTCCTGCTGATGCTATGGGTCATTCTCTTCTTCTACTTTGGGGTCC 176092 || || || |||||||||||| || | | | |||||| | | |||| |||||||| Sbjct 32586 CGCTGCCGTTTCGACTCCTGCTAATAGTTTAGCGCATTCTTTGTTGTTACTGTGGGGTCC 32645 Query 176093 TGAATCTCAGGGCGACTTCCAGCGGTGGCTCCAACTTGGAGGGCTTTGGTCCTTTGTTGC 176152 |||| | || || || || || ||| ||| | || || || ||| | |||||||| Sbjct 32646 TGAAGCACAAGGAGATTTTACTCGTTGGTGTCAATTAGGCGGTCTGTGGGCTTTTGTTGC 32705 Query 176153 TCTCCACGGTGCCTTCGCTCTGATTGGATTCATGCTTCGTCAGTTTGAACTGGCAAGACT 176212 ||||||||| || ||||| | || || || ||| | ||||| |||||||| || || Sbjct 32706 TCTCCACGGCGCTTTCGCATTAATAGGTTTTATGTTACGTCAATTTGAACTTGCTCGATC 32765 Query 176213 CATTGGTATCCGTCCCTACAACGCTATTGCATTCAGTGGTCCTATCGCTGTATTTGTCAG 176272 | || | || || || || || || |||||| |||||| || ||||| ||||| Sbjct 32766 CGTTCAATTGCGACCTTATAATGCAATCGCATTCTCTGGTCCAATTGCTGTTTTTGTTTC 32825 Query 176273 TGTGTTTCTTCTATACCCACTAGGTCAATCTTCCTGGTTCTTTGCCCCCTCCTTTGGTGT 176332 ||| || || | || ||||| ||||||||| ||||||||||| || |||||||| Sbjct 32826 TGTCTTCCTAATTTATCCACTGGGTCAATCTGGTTGGTTCTTTGCGCCTAGTTTTGGTGT 32885 Query 176333 GGCAGCAATCTTTAGATTCCTATTGTTTCTTCAGGGTTTCCACAACTGGACACTGAACCC 176392 || || || ||| ||||| | | ||| | || || || || || |||||| ||||||| Sbjct 32886 AGCGGCTATATTTCGATTCATCCTCTTTTTCCAAGGGTTTCATAATTGGACATTGAACCC 32945 Query 176393 CTTCCATATGATGGGAGTTGCTGGTATACTAGGTGGAGCACTACTATCTGCAATCCATGG 176452 || |||||||||||||| || ||| |||| || | || || |||| || || ||||| Sbjct 32946 ATTTCATATGATGGGAGTCGCCGGTGTACTGGGCGCCGCTCTGCTATGCGCTATTCATGG 33005 Query 176453 CGTTACTGTTGAAAATACCCTATATGAAGATGGAGAACAGAACAACACCTTCACTGCGTT 176512 | |||||| |||||||| ||| ||||||||| || || || ||| ||| || Sbjct 33006 TGCTACTGTAGAAAATACTTTATTTGAAGATGGTGATGGTGCAAATACATTCCGTGCTTT 33065 Query 176513 CGATTCCACGCAGGAGGAAGAGACCTATTCGATGGTTACTGCGAACCGCTTCTGGTCGCA 176572 | | || || | ||||| || ||||| ||||| || || |||||||| ||||| || Sbjct 33066 TAACCCAACTCAAGCTGAAGAAACTTATTCAATGGTCACCGCTAACCGCTTTTGGTCACA 33125 Query 176573 AATCTTCGGGGTTGCGTTTAGTAATAAGCGTTGGCTTCACTTCTTTATGTTGTTTGTCCC 176632 |||||| |||||||| ||| ||||| |||||| | || ||||||||||| ||||| || Sbjct 33126 AATCTTTGGGGTTGCTTTTTCCAATAAACGTTGGTTACATTTCTTTATGTTATTTGTACC 33185 Query 176633 TGTCATGGGTCTTTGGGTCTCAAGTATTGGCATCATTGGGCTTGCTCTTAATCTTCGTGC 176692 || | ||| | ||| | | |||| | | || || ||| | || || ||||| Sbjct 33186 GGTAACTGGTTTATGGATGAGTGCTCTTGGAGTAGTCGGCCTAGCTTTGAACCTACGTGC 33245 Query 176693 TTATGATTTTGTGAGCCAAGAGATTAGAGCAGCAGAAGATCCTGAGTTTGAAACTTTCTA 176752 ||||| || || ||| || || | ||||| |||||||| || ||||| |||||||| Sbjct 33246 CTATGACTTCGTTTCCCAGGAAATCCGTGCAGCGGAAGATCCGGAATTTGAGACTTTCTA 33305 Query 176753 CACAAAGAACATCCTTCTTAACGAAGGACTAAGAGCATGGATGGCACCTGTGGATCAACC 176812 || || || || ||| | |||||||| | | || |||||||| || ||||| || Sbjct 33306 TACTAAAAATATTCTTTTAAACGAAGGTATTCGTGCTTGGATGGCGGCTCAAGATCAGCC 33365 Query 176813 ACATGAGTCATTTGTATTCCCAGAAGAAGTTCTACCTAGAGGTAACGC 176860 ||||| || ||||||| || || |||||||| | || ||||| Sbjct 33366 TCATGAAAACCTTATATTCCCTGAGGAGGTTCTACCACGTGGAAACGC 33413 >seq218717 Length=448 Score = 87.8 bits (96), Expect = 3e-12 Identities = 152/220 (69%), Gaps = 1/220 (0%) Strand=Plus/Minus Query 174795 TATATGGGACGTGAGTGGGAACTCTCTTATCGTTTAGGTATGAGACCTTGGATCTGTGTA 174854 |||||| | |||||||||||||| || || | |||||| | |||||||| ||| Sbjct 226 TATATGAGTCGTGAGTGGGAACTTAGTTTATGTCTGGGTATGCGTCCTTGGATTGTTGTT 167 Query 174855 GCATACTCTGCACCAG-TTGCAGCAGCTTCAGCAGTATTCCTAGTCTATCCTTTCGGTCA 174913 ||||| || || || | ||||||| ||| | || ||| | | ||||| | ||||| Sbjct 166 GCATATTCAGCTCCTGTTTGCAGCTGCTATTGTTGTTTTCTTGATTTATCCAATTGGTCA 107 Query 174914 AGGTTCATTCTCAGACGCGATGCCCTTGGGTATCTCTGGAACATTCAACTACATGTTGGT 174973 ||| || | | | ||||| | || |||||| | || ||||||| || | || Sbjct 106 AGGAAGTTTTTTTAATGGTATGCCTCTAGGAATCTCTTGTACTTTCAACTTTATTATTGT 47 Query 174974 CTTCCAAGCAGAACATAACATCTTGATGCACCCCTTCCAC 175013 ||||| || || || ||||| | |||||||| || ||| Sbjct 46 ATTCCAGGCTGAGCACAACATTCTTATGCACCCATTTCAC 7 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 727491379660640