Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Arabis_20nordmanniana_20[genbank_20GCA_5F001484925.1_202016-01-04]
267,228 sequences; 342,306,570 total letters
Query= NC_026928.1
Length=189418
Score E
Sequences producing significant alignments: (Bits) Value
seq28607 580 1e-160
seq218717 118 1e-21
seq180749 109 7e-19
>seq28607
Length=83266
Score = 580 bits (642), Expect = 1e-160
Identities = 699/951 (74%), Gaps = 0/951 (0%)
Strand=Plus/Minus
Query 177891 GGTTGGTTCGGCGTACTGATGATTCCAACTCTGTTGGCAGCAACTATCTGTTTCATCGTC 177950
|| ||||| || || ||||||| || || | ||| | |||||| | ||| || ||
Sbjct 1460 GGATGGTTTGGTGTTTTGATGATCCCTACCTTATTGACCGCAACTTCCGTTTTTATTATC 1401
Query 177951 GCCTTCGTCGCTGCTCCCCCTGTGGACATCGACGGCATCCGTGAACCCGTCGCTGGTTCA 178010
|| ||| | |||||||| || || || || || || || |||||||| || |||| ||
Sbjct 1400 GCATTCATTGCTGCTCCTCCAGTAGATATTGATGGTATTCGTGAACCTGTTTCTGGATCT 1341
Query 178011 CTCATGTATGGCAACAACATCATCTCTGGTGCAGTTGTTCCATCTTCCAACGCAATTGGT 178070
|| | || || ||||| || || || ||||| || |||| |||| || ||||||
Sbjct 1340 CTTCTTTACGGAAACAATATTATTTCAGGTGCCATTATTCCTACTTCTGCAGCTATTGGT 1281
Query 178071 CTTCACTTCTATCCCATCTGGGAAGCCGCATCACTTGATGAGTGGCTGTATAACGGTGGT 178130
| || || || || ||||||||||| ||||| ||||||| ||||| || ||||| |||
Sbjct 1280 TTGCATTTTTACCCGATCTGGGAAGCTGCATCCGTTGATGAATGGCTATACAACGGCGGT 1221
Query 178131 CCTTTCCAACTCGTAGTATTTCACTTCCTCATTGGTATCTATGCATACATGGGACGTGAG 178190
|||| |||| | || | ||||| | ||||| | | || ||||| ||||||
Sbjct 1220 CCTTATGAACTAATTGTTCTACACTTTTTACTTGGTGTAGCTTGTTATATGGGTCGTGAG 1161
Query 178191 TGGGAACTTTCATACCGTTTAGGTATGCGCCCCTGGATCTGTGTAGCATACTCTGCTCCA 178250
||||||||| | |||| | |||||||| || ||||| ||| ||||| || |||||
Sbjct 1160 TGGGAACTTAGTTTCCGTCTGGGTATGCGTCCTTGGATTGCTGTTGCATATTCAGCTCCT 1101
Query 178251 GTAGCAGCAGCATCGGCAGTATTCCTGGTCTATCCTTTCGGTCAAGGTTCATTTTCTGAC 178310
|| ||||| ||| | || || ||| || |||| || | |||||||| ||||||||
Sbjct 1100 GTTGCAGCTGCAACTGCTGTTTTCTTGATCTACCCAATTGGTCAAGGAAGTTTTTCTGAT 1041
Query 178311 GCAATGCCACTTGGCATCTCTGGTACATTCAACTACATGCTTGTTTTCCAAGCAGAACAC 178370
| ||||| || || ||||||||||| ||||||| ||| |||| ||||| || || |||
Sbjct 1040 GGTATGCCTCTAGGAATCTCTGGTACTTTCAACTTTATGATTGTATTCCAGGCTGAGCAC 981
Query 178371 AACATTCTGATGCACCCCTTCCACATGTTGGGTGTCGCAGGTGTATTCGGTGGTTCACTG 178430
|||||||| |||||||| || |||||||| ||||| || ||||||||||| || || ||
Sbjct 980 AACATTCTTATGCACCCATTTCACATGTTAGGTGTAGCTGGTGTATTCGGCGGCTCCCTA 921
Query 178431 TTCAGTGCAATGCACGGTTCTTTGGTTACATCTTCACTCGTTCGTGAAACGACTGAAACA 178490
|| ||||| ||||| ||||| ||||| || ||| | | | ||||| || ||||
Sbjct 920 TTTAGTGCTATGCATGGTTCCTTGGTAACTTCTAGTTTGATCAGGGAAACCACAGAAAAT 861
Query 178491 GAATCACAGAACTATGGTTATAAGTTCGGACAAGAAGAAGAGACATACAACATCGTTGCA 178550
||||| || | ||||| || ||||||||||||||||| || |||||||| || ||
Sbjct 860 GAATCTGCTAATGAAGGTTACAAATTCGGACAAGAAGAAGAAACTTACAACATTGTAGCT 801
Query 178551 GCACATGGCTACTTCGGTCGTTTGATCTTCCAATATGCTTCATTCAACAACTCACGTTCA 178610
|| ||||| || || || || |||||||||||||||||| |||||||| || |||||
Sbjct 800 GCTCATGGTTATTTTGGCCGATTGATCTTCCAATATGCTAGTTTCAACAATTCTCGTTCT 741
Query 178611 CTGCACTTCTTCCTCGCAGCATGGCCTGTAGTTGGAATCTGGTTCACCGCACTGGGCGTA 178670
| || |||||| | || || ||||| ||||| || || ||||| || || | || |
Sbjct 740 TTACATTTCTTCTTAGCGGCTTGGCCGGTAGTAGGTATTTGGTTTACTGCTTTAGGTATT 681
Query 178671 AGCACCATGGCATTTAACCTCAATGGATTCAACTTCAACCAGTCCATCCTCGACGGACAA 178730
||||||||||| || ||||| ||||| ||||| |||||||| || | | || | |||
Sbjct 680 AGCACCATGGCTTTCAACCTAAATGGTTTCAATTTCAACCAATCAGTAGTTGATAGTCAA 621
Query 178731 GGACGTGTCCTCAACACATGGGCAGACGTGCTCAACCGTGCCGGTCTCGGCATGGAAGTC 178790
|||||||| | || || ||||| || | | |||||||| || || ||||||||
Sbjct 620 GGACGTGTTATTAATACTTGGGCTGATATTATTAACCGTGCTAACCTTGGTATGGAAGTT 561
Query 178791 ATGCACGAGCGCAACGCGCACAACTTCCCGCTTGATCTTGCAGCAGCTGAG 178841
||||| || || || || ||||||||||| || || || || || | ||||
Sbjct 560 ATGCATGAACGTAATGCTCACAACTTCCCTCTAGACCTAGCTGCTGTTGAG 510
Score = 488 bits (540), Expect = 7e-133
Identities = 708/1000 (71%), Gaps = 0/1000 (0%)
Strand=Plus/Plus
Query 179233 TGGACGACTGGGTTAAACGGGATCGCTTTGTCTTTGTGGGTTGGTCTGGACTCCTACTTC 179292
|||| |||||| | |||| ||||| || ||||| ||||||||||| || | ||
Sbjct 32414 TGGATGACTGGTTACGGAGGGACCGCTTCGTTTTTGTAGGTTGGTCTGGTCTATTGCTCT 32473
Query 179293 TTCCCACTGCTTATCTTGCCATTGGCGGTTGGCTTACTGGGACAGCTTTTGTTACGAGTT 179352
|||| ||| ||| | || | || |||||| | || || ||| | ||||| || |
Sbjct 32474 TTCCTTGTGCCTATTTCGCTTTAGGGGGTTGGTTCACAGGTACAACCTTTGTAACTTCAT 32533
Query 179353 GGTACACCCACGGTCTTGCTAGTTCCTATCTTGAGGGTGCTAACTTTCTTACGGCAGCTG 179412
|||| || || || | |||||||||||| | || ||| || ||| | || || || |
Sbjct 32534 GGTATACTCATGGATTGGCTAGTTCCTATTTAGAAGGTTGCAATTTTTTAACCGCTGCCG 32593
Query 179413 TCTCGACGCCTGCTGATGCTATGGGTCATTCTCTTCTTCTACTTTGGGGTCCTGAGTCTC 179472
| ||||| |||||| || | | | |||||| | | |||| ||||||||||| | |
Sbjct 32594 TTTCGACTCCTGCTAATAGTTTAGCGCATTCTTTGTTGTTACTGTGGGGTCCTGAAGCAC 32653
Query 179473 AGGGGAATTTCCAGCGGTGGTGCCAACTTGGGGGACTCTGGAATTTCGTGGCTCTCCACG 179532
| || |||| || ||||| ||| | || || || ||| ||| || ||||||||||
Sbjct 32654 AAGGAGATTTTACTCGTTGGTGTCAATTAGGCGGTCTGTGGGCTTTTGTTGCTCTCCACG 32713
Query 179533 GTGCCTTCGCTCTCATTGGTTTCATGCTTAGGCAATTTGAACTTGCTCGCCTGATTGGTA 179592
| || ||||| | || ||||| ||| | | ||||||||||||||||| ||
Sbjct 32714 GCGCTTTCGCATTAATAGGTTTTATGTTACGTCAATTTGAACTTGCTCGATCCGTTCAAT 32773
Query 179593 TCAGACCTTACAATGCGATTGCTTTTTCTGGTCCTATTGCTGTATTCGTCAGTGTTTTCC 179652
| ||||||| ||||| || || || |||||||| |||||||| || || ||| ||||
Sbjct 32774 TGCGACCTTATAATGCAATCGCATTCTCTGGTCCAATTGCTGTTTTTGTTTCTGTCTTCC 32833
Query 179653 TCATCTATCCTTTGGGACAGTCCTCTTGGTTTTTCGCGCCGTCCTTTGGTGTCGCGGCGA 179712
| || ||||| |||| || || |||||| || ||||| |||||||| ||||| |
Sbjct 32834 TAATTTATCCACTGGGTCAATCTGGTTGGTTCTTTGCGCCTAGTTTTGGTGTAGCGGCTA 32893
Query 179713 TCTTCAGGTTCTTGCTGTTCCTTCAGGGTTTCCACAACTGGACGCTCAACCCCTTCCATA 179772
| || | ||| | || || | || || || || || ||||| | ||||| || ||||
Sbjct 32894 TATTTCGATTCATCCTCTTTTTCCAAGGGTTTCATAATTGGACATTGAACCCATTTCATA 32953
Query 179773 TGATGGGAGTTGCTGGTATACTAGGAGGAGCACTGCTCAGTGCTATCCATGGAGTTACTG 179832
|||||||||| || ||| |||| || | || ||||| | ||||| ||||| | |||||
Sbjct 32954 TGATGGGAGTCGCCGGTGTACTGGGCGCCGCTCTGCTATGCGCTATTCATGGTGCTACTG 33013
Query 179833 TAGAGAATACATTGTATGAAGATGGAGAACAAGCAAATACCTTTAAGGCGTTTGATTCGA 179892
|||| ||||| || | ||||||||| || |||||||| || || ||| | | |
Sbjct 33014 TAGAAAATACTTTATTTGAAGATGGTGATGGTGCAAATACATTCCGTGCTTTTAACCCAA 33073
Query 179893 CACAGGAAGAAGAGACTTATTCTATGGTCACTGCAAACCGCTTCTGGTCGCAGATCTTCG 179952
| || | ||||| |||||||| |||||||| || |||||||| ||||| || ||||| |
Sbjct 33074 CTCAAGCTGAAGAAACTTATTCAATGGTCACCGCTAACCGCTTTTGGTCACAAATCTTTG 33133
Query 179953 GTATTGCATTTTCTAACAAGCGGTGGCTTCATTTTTTCATGTTGTTTGTGCCTGTTATGG 180012
| |||| ||||| || || || ||| | ||||| || ||||| ||||| || || | |
Sbjct 33134 GGGTTGCTTTTTCCAATAAACGTTGGTTACATTTCTTTATGTTATTTGTACCGGTAACTG 33193
Query 180013 GTCTATGGACATCCTCTATTGGCATTATTGGTCTTGCTCTCAACCTTCGTGCTTACGATT 180072
|| |||||| || |||| | | || || ||| | ||||| ||||| || || |
Sbjct 33194 GTTTATGGATGAGTGCTCTTGGAGTAGTCGGCCTAGCTTTGAACCTACGTGCCTATGACT 33253
Query 180073 TCGTAAGTCAGGAGATCAGAGCAGCAGAAGATCCCGAGTTTGAGACCTTCTACACCAAGA 180132
|||| ||||| ||| | ||||| |||||||| || |||||||| ||||| || || |
Sbjct 33254 TCGTTTCCCAGGAAATCCGTGCAGCGGAAGATCCGGAATTTGAGACTTTCTATACTAAAA 33313
Query 180133 ACATTCTTCTCAATGAAGGACTACGTGCATGGTTGGCACCAGTTGATCAACCACATGAGT 180192
| |||||| | || ||||| | ||||| ||| |||| | ||||| || |||||
Sbjct 33314 ATATTCTTTTAAACGAAGGTATTCGTGCTTGGATGGCGGCTCAAGATCAGCCTCATGAAA 33373
Query 180193 CATTCGTATTCCCAGAAGAAGTTCTGCCAAGAGGTAATGC 180232
| ||||||| || || ||||| ||| | || || ||
Sbjct 33374 ACCTTATATTCCCTGAGGAGGTTCTACCACGTGGAAACGC 33413
>seq218717
Length=448
Score = 118 bits (130), Expect = 1e-21
Identities = 159/220 (72%), Gaps = 1/220 (0%)
Strand=Plus/Minus
Query 178176 TACATGGGACGTGAGTGGGAACTTTCATACCGTTTAGGTATGCGCCCCTGGATCTGTGTA 178235
|| ||| | ||||||||||||||| | || | |||||||| || ||||| |||
Sbjct 226 TATATGAGTCGTGAGTGGGAACTTAGTTTATGTCTGGGTATGCGTCCTTGGATTGTTGTT 167
Query 178236 GCATACTCTGCTCCAGTA-GCAGCAGCATCGGCAGTATTCCTGGTCTATCCTTTCGGTCA 178294
||||| || ||||| || ||||| || | || ||| || | ||||| | |||||
Sbjct 166 GCATATTCAGCTCCTGTTTGCAGCTGCTATTGTTGTTTTCTTGATTTATCCAATTGGTCA 107
Query 178295 AGGTTCATTTTCTGACGCAATGCCACTTGGCATCTCTGGTACATTCAACTACATGCTTGT 178354
||| |||| | | | ||||| || || |||||| |||| ||||||| || ||||
Sbjct 106 AGGAAGTTTTTTTAATGGTATGCCTCTAGGAATCTCTTGTACTTTCAACTTTATTATTGT 47
Query 178355 TTTCCAAGCAGAACACAACATTCTGATGCACCCCTTCCAC 178394
||||| || || ||||||||||| |||||||| || |||
Sbjct 46 ATTCCAGGCTGAGCACAACATTCTTATGCACCCATTTCAC 7
>seq180749
Length=15184
Score = 109 bits (120), Expect = 7e-19
Identities = 129/175 (74%), Gaps = 0/175 (0%)
Strand=Plus/Plus
Query 176350 TCCTTGACGCTGCTGAAGAAGCAGGTGTAGATATCAATTACTCTTGTCGTGCTGGTGCTT 176409
|||| ||||| |||||||||||||| | ||| | ||||||||| || ||||| | |
Sbjct 10959 TCCTCGACGCAGCTGAAGAAGCAGGAATCGATTTGCCTTACTCTTGCCGCTCTGGTTCAT 11018
Query 176410 GTTCATCTTGTGCTGGCAAACTAGAGAGTGGTTCTGTTGATCAGAGTGATCAGTCTTTCC 176469
|||| ||||| || ||| | || ||| ||||||||||| ||| ||| |||||
Sbjct 11019 GTTCTAGCTGTGCAGGTAAAGTTAAGTCTGGAACTGTTGATCAGTCTGACCAGAGTTTCC 11078
Query 176470 TGGATGATGATCAAATTGAATCTGGTTTTATTCTGACTTGCGTATCTTATCCTAC 176524
| ||||||||||| |||| || ||| |||| ||||| | ||||||||||
Sbjct 11079 TCGATGATGATCAGATTGCTGAAGGATTTGTTCTCACTTGTGCTGCTTATCCTAC 11133
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 603985315832640
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