Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Arabis_20nordmanniana_20[genbank_20GCA_5F001484925.1_202016-01-04] 267,228 sequences; 342,306,570 total letters Query= NC_027132.1 Length=190768 Score E Sequences producing significant alignments: (Bits) Value seq28607 621 4e-173 seq218717 158 1e-33 seq180749 104 3e-17 seq207321 87.8 2e-12 >seq28607 Length=83266 Score = 621 bits (688), Expect = 4e-173 Identities = 741/1003 (74%), Gaps = 2/1003 (0%) Strand=Plus/Minus Query 178861 TTCTGCGAGTGGGTAACGTCCACCAACAATCGTTTGTATGTTGGTTGGTTCGGTGTGCTG 178920 ||||| | ||| |||| ||| | |||||| | || |||| ||||| ||||| || Sbjct 1502 TTCTGTAACTGGATAACCAGCACTGAAAATCGTCTTTACATTGGATGGTTTGGTGTTTTG 1443 Query 178921 ATGATTCCTACGTTGCTTGCTGCAACTATCTGTTTCATCGTTGCTTTCGTAGCAGCACCT 178980 ||||| ||||| || | | |||||| | ||| || | || ||| | || || ||| Sbjct 1442 ATGATCCCTACCTTATTGACCGCAACTTCCGTTTTTATTATCGCATTCATTGCTGCTCCT 1383 Query 178981 CCCGTCGATATTGACGGCATCCGTGAACCCGTCGCTGGTTCACTCATGTATGGAAACAAC 179040 || || |||||||| || || |||||||| || |||| || || | || |||||||| Sbjct 1382 CCAGTAGATATTGATGGTATTCGTGAACCTGTTTCTGGATCTCTTCTTTACGGAAACAAT 1323 Query 179041 ATCATCTCTGGTGCTGTTGTCCCAAGTTCAAACGCAATTGGTCTACACTTCTACCCCATC 179100 || || || ||||| || | || | ||| || |||||| | || || ||||| ||| Sbjct 1322 ATTATTTCAGGTGCCATTATTCCTACTTCTGCAGCTATTGGTTTGCATTTTTACCCGATC 1263 Query 179101 TGGGAAGCAGCATCACTCGATGAGTGGCTGTATAACGGTGGTCCTTTCCAACTGGTAGTC 179160 |||||||| ||||| | ||||| ||||| || ||||| ||||||| |||| | || Sbjct 1262 TGGGAAGCTGCATCCGTTGATGAATGGCTATACAACGGCGGTCCTTATGAACTAATTGTT 1203 Query 179161 TTCCACTTCCTTATCGGCATCTATGCCTATATGGGACGTGAGTGGGAACTTTCTTACCGT 179220 | ||||| | | || | | |||||||| ||||||||||||||| || |||| Sbjct 1202 CTACACTTTTTACTTGGTGTAGCTTGTTATATGGGTCGTGAGTGGGAACTTAGTTTCCGT 1143 Query 179221 CTAGGTATGCGTCCATGGATCTGTGTTGCATACTCTGCACCAGTCGCTGCTGCGAGTGCA 179280 || ||||||||||| ||||| ||||||||| || || || || || ||||| | ||| Sbjct 1142 CTGGGTATGCGTCCTTGGATTGCTGTTGCATATTCAGCTCCTGTTGCAGCTGCAACTGCT 1083 Query 179281 GTATTCCTCGTCTATCCTTTCGGTCAAGGTTCTTTCTCTGATGCTATGCCTCTTGGTATC 179340 || ||| | |||| || | |||||||| ||| ||||||| ||||||||| || ||| Sbjct 1082 GTTTTCTTGATCTACCCAATTGGTCAAGGAAGTTTTTCTGATGGTATGCCTCTAGGAATC 1023 Query 179341 TCTGGTACTTTTAACTACATGCTTGTATTCCAAGCAGAACACAACATCCTTATGCACCCG 179400 ||||||||||| |||| ||| |||||||||| || || |||||||| ||||||||||| Sbjct 1022 TCTGGTACTTTCAACTTTATGATTGTATTCCAGGCTGAGCACAACATTCTTATGCACCCA 963 Query 179401 TTCCATATGCTCGGTGTTGCTGGGGTATTCGGTGGATCTCTTTTCTCTGCTATGCACGGA 179460 || || ||| | ||||| ||||| |||||||| || || || || ||||||||| || Sbjct 962 TTTCACATGTTAGGTGTAGCTGGTGTATTCGGCGGCTCCCTATTTAGTGCTATGCATGGT 903 Query 179461 AGTCTCGTTACTTCCTCGCTTGTTC-GTGAAACAACTGAGACAGAGTCACAGAACTATGG 179519 | || ||||| | | ||| || | ||||| || || | || || || | || Sbjct 902 TCCTTGGTAACTTC-TAGTTTGATCAGGGAAACCACAGAAAATGAATCTGCTAATGAAGG 844 Query 179520 TTATAAGTTCGGACAAGAAGAAGAGACCTATAACATCGTCGCAGCACATGGCTACTTCGG 179579 ||| || ||||||||||||||||| || || ||||| || || || ||||| || || || Sbjct 843 TTACAAATTCGGACAAGAAGAAGAAACTTACAACATTGTAGCTGCTCATGGTTATTTTGG 784 Query 179580 TCGTTTGATCTTCCAATATGCATCCTTTAACAACTCACGCTCTTTGCACTTCTTCCTTGC 179639 || ||||||||||||||||| || ||||| || || ||||| || |||||| | || Sbjct 783 CCGATTGATCTTCCAATATGCTAGTTTCAACAATTCTCGTTCTTTACATTTCTTCTTAGC 724 Query 179640 TGCGTGGCCGGTTGTCGGCATCTGGTTCACTGCTCTTGGCGTGTCAACCATGGCGTTCAA 179699 || |||||||| || || || ||||| |||||| | || | |||||||| ||||| Sbjct 723 GGCTTGGCCGGTAGTAGGTATTTGGTTTACTGCTTTAGGTATTAGCACCATGGCTTTCAA 664 Query 179700 CCTCAACGGTTTCAACTTCAACCAGTCCATCCTTGACGGTCAAGGACGTGTCCTTAACAC 179759 ||| || |||||||| |||||||| || | |||| ||||||||||||| |||| || Sbjct 663 CCTAAATGGTTTCAATTTCAACCAATCAGTAGTTGATAGTCAAGGACGTGTTATTAATAC 604 Query 179760 ATGGGCGGACGTATTGAACCGTGCAGGTTTGGGTATGGAAGTTATGCATGAGCGTAACGC 179819 ||||| || | | |||||||| | |||||||||||||||||||| ||||| || Sbjct 603 TTGGGCTGATATTATTAACCGTGCTAACCTTGGTATGGAAGTTATGCATGAACGTAATGC 544 Query 179820 ACACAACTTCCCACTCGACCTTGCTGCTGCTGAGTCTACACCT 179862 ||||||||||| || ||||| ||||||| |||| || || || Sbjct 543 TCACAACTTCCCTCTAGACCTAGCTGCTGTTGAGGCTCCATCT 501 Score = 509 bits (564), Expect = 2e-139 Identities = 701/980 (72%), Gaps = 0/980 (0%) Strand=Plus/Plus Query 180051 GACCGCTTTGTATTTGTGGGCTGGTCTGGACTACTACTTCTTCCCACTGCTTATCTTGCC 180110 |||||||| || ||||| || |||||||| ||| | || |||| ||| ||| | || Sbjct 32434 GACCGCTTCGTTTTTGTAGGTTGGTCTGGTCTATTGCTCTTTCCTTGTGCCTATTTCGCT 32493 Query 180111 ATTGGCGGTTGGCTTACTGGCACAGCTTTTGTCACGAGTTGGTACACCCACGGTCTTGCT 180170 | || |||||| | || || ||| | ||||| || ||||| || || || | ||| Sbjct 32494 TTAGGGGGTTGGTTCACAGGTACAACCTTTGTAACTTCATGGTATACTCATGGATTGGCT 32553 Query 180171 TCTTCCTATCTTGAAGGTGCTAACTTTCTTACGGCAGCTGTCTCGACGCCTGCTGACGCT 180230 ||||||| | |||||| || ||| | || || || || ||||| |||||| | | Sbjct 32554 AGTTCCTATTTAGAAGGTTGCAATTTTTTAACCGCTGCCGTTTCGACTCCTGCTAATAGT 32613 Query 180231 ATGGGTCATTCTCTTCTTCTACTTTGGGGTCCTGAGTCTCAGGGGAATTTCCAACGGTGG 180290 | | |||||| | | |||| ||||||||||| | || || |||| || ||| Sbjct 32614 TTAGCGCATTCTTTGTTGTTACTGTGGGGTCCTGAAGCACAAGGAGATTTTACTCGTTGG 32673 Query 180291 TGCCAACTTGGGGGACTCTGGAATTTCGTGGCTCTCCACGGTGCCTTCGCCCTAATTGGA 180350 || ||| | || || || ||| ||| || ||||||||||| || ||||| |||| || Sbjct 32674 TGTCAATTAGGCGGTCTGTGGGCTTTTGTTGCTCTCCACGGCGCTTTCGCATTAATAGGT 32733 Query 180351 TTTATGCTACGCCAGTTTGAACTGGCACGTCTTATTGGTATCCGTCCTTACAATGCTATT 180410 |||||| |||| || |||||||| || || || | || ||||| ||||| || Sbjct 32734 TTTATGTTACGTCAATTTGAACTTGCTCGATCCGTTCAATTGCGACCTTATAATGCAATC 32793 Query 180411 GCATTCTCTGGTCCTATCGCTGTATTTGTCAGCGTATTTCTCATCTACCCACTGGGTCAG 180470 |||||||||||||| || ||||| ||||| || || || || || ||||||||||| Sbjct 32794 GCATTCTCTGGTCCAATTGCTGTTTTTGTTTCTGTCTTCCTAATTTATCCACTGGGTCAA 32853 Query 180471 TCCAGTTGGTTCTTTGCTCCCTCTTTTGGGGTAGCAGCAATCTTTAGATTCCTACTCTTT 180530 || ||||||||||||| || |||||| ||||| || || ||| ||||| | |||||| Sbjct 32854 TCTGGTTGGTTCTTTGCGCCTAGTTTTGGTGTAGCGGCTATATTTCGATTCATCCTCTTT 32913 Query 180531 CTTCAGGGTTTCCACAACTGGACCCTCAACCCCTTCCATATGATGGGAGTTGCTGGTATA 180590 | || || || || || ||||| | ||||| || |||||||||||||| || ||| || Sbjct 32914 TTCCAAGGGTTTCATAATTGGACATTGAACCCATTTCATATGATGGGAGTCGCCGGTGTA 32973 Query 180591 CTAGGTGGAGCATTGCTATCAGCAATCCATGGCGTAACTGTGGAGAACACACTGTATGAA 180650 || || | || |||||| || || ||||| | ||||| || || || | | |||| Sbjct 32974 CTGGGCGCCGCTCTGCTATGCGCTATTCATGGTGCTACTGTAGAAAATACTTTATTTGAA 33033 Query 180651 GATGGAGAACAAGCAAACACCTTTAAGGCATTTGATTCAACGCAAGAGGAGGAAACTTAC 180710 ||||| || ||||| || || || ||| | |||| |||| || |||||||| Sbjct 33034 GATGGTGATGGTGCAAATACATTCCGTGCTTTTAACCCAACTCAAGCTGAAGAAACTTAT 33093 Query 180711 TCTATGGTCACTGCAAACCGCTTCTGGTCGCAGATCTTCGGTATTGCATTTTCTAACAAG 180770 || |||||||| || |||||||| ||||| || ||||| || |||| ||||| || || Sbjct 33094 TCAATGGTCACCGCTAACCGCTTTTGGTCACAAATCTTTGGGGTTGCTTTTTCCAATAAA 33153 Query 180771 CGGTGGCTTCATTTTTTCATGTTGTTTGTGCCTGTTATGGGTCTATGGACATCCTCTATT 180830 || ||| | ||||| || ||||| ||||| || || | ||| |||||| || || Sbjct 33154 CGTTGGTTACATTTCTTTATGTTATTTGTACCGGTAACTGGTTTATGGATGAGTGCTCTT 33213 Query 180831 GGCATTATTGGTCTTGCTCTCAACCTTCGTGCTTACGATTTCGTGAGTCAAGAGATCAGA 180890 || | | || || ||| | ||||| ||||| || || ||||| || || ||| | Sbjct 33214 GGAGTAGTCGGCCTAGCTTTGAACCTACGTGCCTATGACTTCGTTTCCCAGGAAATCCGT 33273 Query 180891 GCAGCAGAAGATCCTGAGTTCGAGACGTTCTACACCAAGAACATCCTATTGAATGAAGGA 180950 ||||| |||||||| || || ||||| ||||| || || || || || || || ||||| Sbjct 33274 GCAGCGGAAGATCCGGAATTTGAGACTTTCTATACTAAAAATATTCTTTTAAACGAAGGT 33333 Query 180951 CTACGTGCATGGTTGGCACCTGCCGATCAACCACACGAAAACTTCATCTTCCCTGAAGAA 181010 | ||||| ||| |||| || ||||| || || |||||| | || |||||||| || Sbjct 33334 ATTCGTGCTTGGATGGCGGCTCAAGATCAGCCTCATGAAAACCTTATATTCCCTGAGGAG 33393 Query 181011 GTTCTACCAAGAGGTAACGC 181030 ||||||||| | || ||||| Sbjct 33394 GTTCTACCACGTGGAAACGC 33413 >seq218717 Length=448 Score = 158 bits (174), Expect = 1e-33 Identities = 167/219 (76%), Gaps = 1/219 (0%) Strand=Plus/Minus Query 179188 TATATGGGACGTGAGTGGGAACTTTCTTACCGTCTAGGTATGCGTCCATGGATCTGTGTT 179247 |||||| | ||||||||||||||| || |||| ||||||||||| ||||| |||| Sbjct 226 TATATGAGTCGTGAGTGGGAACTTAGTTTATGTCTGGGTATGCGTCCTTGGATTGTTGTT 167 Query 179248 GCATACTCTGCACCAGTC-GCTGCTGCGAGTGCAGTATTCCTCGTCTATCCTTTCGGTCA 179306 ||||| || || || || || ||||| | || || ||| | | ||||| | ||||| Sbjct 166 GCATATTCAGCTCCTGTTTGCAGCTGCTATTGTTGTTTTCTTGATTTATCCAATTGGTCA 107 Query 179307 AGGTTCTTTCTCTGATGCTATGCCTCTTGGTATCTCTGGTACTTTTAACTACATGCTTGT 179366 ||| ||| | | ||| ||||||||| || |||||| ||||||| |||| || |||| Sbjct 106 AGGAAGTTTTTTTAATGGTATGCCTCTAGGAATCTCTTGTACTTTCAACTTTATTATTGT 47 Query 179367 ATTCCAAGCAGAACACAACATCCTTATGCACCCGTTCCA 179405 |||||| || || |||||||| ||||||||||| || || Sbjct 46 ATTCCAGGCTGAGCACAACATTCTTATGCACCCATTTCA 8 >seq180749 Length=15184 Score = 104 bits (114), Expect = 3e-17 Identities = 140/195 (72%), Gaps = 0/195 (0%) Strand=Plus/Plus Query 177375 TGTGAAGACGATCAGTACATCCTCGACGCCGCTGAAGAAGCAGGTGTTGATATTAATTAC 177434 || |||||||| ||| |||||||||| |||||||||||||| | ||| | |||| Sbjct 10940 TGCGAAGACGACGTTTACGTCCTCGACGCAGCTGAAGAAGCAGGAATCGATTTGCCTTAC 10999 Query 177435 TCATGCCGCGCTGGTGCTTGTTCATCCTGTGCTGGTAAACTTGAGAGTGGTAGTGTAGAT 177494 || |||||| ||||| | ||||| |||||| |||||| || || ||| | ||| ||| Sbjct 11000 TCTTGCCGCTCTGGTTCATGTTCTAGCTGTGCAGGTAAAGTTAAGTCTGGAACTGTTGAT 11059 Query 177495 CAAAGCGATCAATCGTTCTTGGATGACGATCAAATGGAGTCAGGATTTATTCTGACCTGT 177554 || || || ||| | ||||| ||||| || | ||||||| |||| || ||| Sbjct 11060 CAGTCTGACCAGAGTTTCCTCGATGATGATCAGATTGCTGAAGGATTTGTTCTCACTTGT 11119 Query 177555 GTGTCATATCCCACC 177569 | | ||||| ||| Sbjct 11120 GCTGCTTATCCTACC 11134 >seq207321 Length=8752 Score = 87.8 bits (96), Expect = 2e-12 Identities = 128/179 (72%), Gaps = 3/179 (2%) Strand=Plus/Plus Query 177378 GAAGACGATCAGTACATCCTCGACGCCGCTGAAGAAGCAGGTGTTGATATTAATTACTCA 177437 ||||||| || ||| |||||||||| ||||||||||| || | ||| | ||||||| Sbjct 6162 GAAGACG-TC--TACGTCCTCGACGCAGCTGAAGAAGCCGGAATCGATTTGCCTTACTCA 6218 Query 177438 TGCCGCGCTGGTGCTTGTTCATCCTGTGCTGGTAAACTTGAGAGTGGTAGTGTAGATCAA 177497 ||||| ||||| |||| || ||| || |||||||| | ||| || || || Sbjct 6219 TGCCGTTCTGGTTCTTGCTCTAGCTGCGCCGGTAAACTCGTCTCTGGCTTCGTTGACCAG 6278 Query 177498 AGCGATCAATCGTTCTTGGATGACGATCAAATGGAGTCAGGATTTATTCTGACCTGTGT 177556 ||| ||| |||||||| ||||| |||||||| ||| | | | | |||||||| Sbjct 6279 TCCGACCAAAGCTTCTTGGACGACGACCAAATGGAAGAAGGCTATGTCTTAACCTGTGT 6337 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 608290885520640