Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Arabis_20nordmanniana_20[genbank_20GCA_5F001484925.1_202016-01-04]
267,228 sequences; 342,306,570 total letters
Query= NC_027213.1
Length=214699
Score E
Sequences producing significant alignments: (Bits) Value
seq27195 228 1e-54
seq146431 197 2e-45
seq100826 152 7e-32
seq205226 140 4e-28
seq191921 91.5 2e-13
seq164072 84.2 3e-11
>seq27195
Length=13093
Score = 228 bits (252), Expect = 1e-54
Identities = 584/881 (66%), Gaps = 10/881 (1%)
Strand=Plus/Minus
Query 39325 TTTTTGGTATTCACCAACGCGTTTCTCGAAAAAATTAGTTTTGCCTTCCAATGATATATT 39384
||| ||||| |||||||| | ||||| ||||| |||||||| |||| | || ||
Sbjct 9523 TTTCTGGTAATCACCAACTCTCTTCTCAAAAAAGTTAGTTTTCCCTTGAAGCGAGATTAA 9464
Query 39385 TTCCATGAAATCAAACGGATTAGTTGCATTATAtttttttttAAATCCTAATTCTGAAAT 39444
||||| |||||||||||||||| || || || | | || | | |
Sbjct 9463 CTCCATCCAATCAAACGGATTAGTCACACCGTACACCTTACCATACCCAAGCGCACCCAA 9404
Query 39445 CAATCTATCTGCAACAAATTCTATGTATGTTTTCATCATTTCACAATTCATTCCTATGAG 39504
| ||||| |||||||| || || || |||||| ||||| |||||| |||| |
Sbjct 9403 AAGCCTATCCGCAACAAACTCAATATACTCACTCATCAATTCACGATTCATCCCTACCAA 9344
Query 39505 TTTAACTGGTAGAGCCTCCGTTAGAAACTCTTTTTCGATGTCTACGGCCTCTGTTATTAT 39564
|| || || || | ||||||| | ||||| || || || || | ||
Sbjct 9343 CGCGCACGGAAGCGCGTCGCACACAAACTCTCTCTCGATCTCCACAGCGTCGCACACAAT 9284
Query 39565 CGATGTTACTACCTCATCACTCGG--TGGATGCAATAAATGTTTAAACATTAAGCAGGCG 39622
||| | ||| ||| || || | | | | | || ||| || | | | ||| |||
Sbjct 9283 CGACTTCACTCGCTCCTCCGTCAGCTTCGTTCGGAGAAGTGTGTAGA--TCAGGCAAGCG 9226
Query 39623 AAGTCACAATGTAGGCCCTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGTCCAGGC 39682
|| || || |||| ||| || |||| ||||| ||||| || || || | ||||||
Sbjct 9225 AAATCGCAGTGTAAGCCTTCGTCTCGTGAGATTAACTCGTTTGAGAAAGTTAACCCAGGC 9166
Query 39683 ATTAGACCACGCTTTTTGAGCCAAAATATGGCAGCAAAAGAT-CCAGAAAAGAAGATGCC 39741
|| || || || ||||||||||| || || | | || ||| | || || |||||||| ||
Sbjct 9165 ATGAGCCCTCGTTTTTTGAGCCAGAAAATCGAA-CAGAAGCTACCGGAGAAGAAGATACC 9107
Query 39742 TTCTACTGCTGCAAATGCAACAAGTCTCTCTCCGTAACT-TGT-ATCATTATGTATCCAC 39799
||| || || || || || | || || || || | || ||| || |||||
Sbjct 9106 TTCGACGCACGCGAAAGCGACGATTCGTTCAGCGAAAGTCTGAGATCC--ATCGATCCAT 9049
Query 39800 TTCTGTGCCCAATCAGCTTTCTTCTTTACACAAGGCATTGTTTCTATAGCATTAAAGAGA 39859
|| ||||| | ||||||||| || ||||| |||||||| || || ||||||
Sbjct 9048 GTCATAGCCCATTGAGCTTTCTTAGCGACGCAAGGGATTGTTTCGATTGCGCGGAAGAGA 8989
Query 39860 TAATGTTTTTCATCACTATCTTTAACATATGTATCTATTAACAGACTATACATTTCTGAA 39919
| || | | || | ||||||| | |||||||| | | ||||||||||| || |||
Sbjct 8988 TGATCTCTCTCTTTGTTATCTTTGATGTATGTATCCAGAAGGAGACTATACATCTCAGAA 8929
Query 39920 TGGATGTTTTCAATCGCCATCTGAAATCCGTAAAAACATCTTGCTTCAGTAATTTGTACC 39979
||||| || |||||||| ||||| |||||||| ||| | ||||||| | ||||||
Sbjct 8928 TGGATATTCTCAATCGCGATCTGGAATCCGTAGAAAGCACGCGCTTCAGAGACTTGTACA 8869
Query 39980 TCTGAACAAAATCTTTCCGCCAAATTTTCATTCACTATTCCATCACTAGCGGCAAAAAAT 40039
||||| |||| || | ||| || || ||||| ||| ||||| || ||
Sbjct 8868 TCTGACATGAATCGAGAAGCGAGATTCTCTAGAACGATTCCGTCAGATGCGGCGAAGAAA 8809
Query 40040 GCCAATACATGTTTAATAAAATATTTTTCATCGGGTGTCAATTTATTCCAGTCATTGATA 40099
|| | || ||||| || || | ||| || | | || | |||||||
Sbjct 8808 GCGAGGACGTGTTTGATGAAGTGACGTTCTCCGTCGTTGAGATTCTCCCAGTCACGTCCG 8749
Query 40100 TCTTTTGATATATCTACTTCTTCAGCTGTCCAAAACGACGCCTCTGCCTTTTTGTACATG 40159
|||| ||||| |||||||||||| || ||||| ||||| || || || || ||||||||
Sbjct 8748 TCTTGTGATAGATCTACTTCTTCGGCGGTCCAGAACGATGCTTCGGCTTTCTTGTACATC 8689
Query 40160 TTCCATATATCACGATATTGTATTGGAAAAATAACAAATCT 40200
| ||| || | | || || || ||||| ||| |||||
Sbjct 8688 TCCCAGATCTGTGGGTAGTGAATCGGAAACATACAGAATCT 8648
>seq146431
Length=15796
Score = 197 bits (218), Expect = 2e-45
Identities = 400/591 (68%), Gaps = 2/591 (0%)
Strand=Plus/Plus
Query 39611 ATTAAGCAGGCGAAGTCACAATGTAGGCCCTCATCTCTACTAATTAATTCGTTAGAAAAT 39670
|| || || ||||| ||||| |||| || || |||| || ||||||||||| ||
Sbjct 4122 ATCAAACAAGCGAAATCACAGTGTAAACCTTCGTCTCGTGAGATCAATTCGTTAGAGAAG 4181
Query 39671 GTGAGTCCAGGCATTAGACCACGCTTTTTGAGCCAAAATATGGCAGCAAAAGAT-CCAGA 39729
|| | ||||||||| || ||||| || || ||||| || || | | || ||| | || ||
Sbjct 4182 GTTAATCCAGGCATGAGTCCACGTTTCTTAAGCCAGAAAATCGAA-CAGAAGCTACCTGA 4240
Query 39730 AAAGAAGATGCCTTCTACTGCTGCAAATGCAACAAGTCTCTCTCCGTAACTTGTATCATT 39789
|||||||| ||||| || || || || || | || || | || || |
Sbjct 4241 GAAGAAGATACCTTCAACACAAGCGAAAGCTACGATTCGTTCAGCAAAAGTTTGAGATCC 4300
Query 39790 ATGTATCCACTTCTGTGCCCAATCAGCTTTCTTCTTTACACAAGGCATTGTTTCTATAGC 39849
|| ||||| || ||||| | ||||||||| |||||||| |||||||| | ||
Sbjct 4301 ATCGATCCAAGTCATAGCCCATTGAGCTTTCTTAGCAACACAAGGAATTGTTTCGACTGC 4360
Query 39850 ATTAAAGAGATAATGTTTTTCATCACTATCTTTAACATATGTATCTATTAACAGACTATA 39909
|| |||| || | | || | ||||||| | || ||||| | ||| ||||||||
Sbjct 4361 GCGGAATAGATGATCTCTCTCTTTGTTATCTTTGATGTAAGTATCGAGTAAGAGACTATA 4420
Query 39910 CATTTCTGAATGGATGTTTTCAATCGCCATCTGAAATCCGTAAAAACATCTTGCTTCAGT 39969
||| || |||||||| || |||||||| || ||||||||||| || | ||||| |
Sbjct 4421 CATCTCAGAATGGATATTCTCAATCGCGATTTGAAATCCGTAGAATGCACGCGCTTCGGA 4480
Query 39970 AATTTGTACCTCTGAACAAAATCTTTCCGCCAAATTTTCATTCACTATTCCATCACTAGC 40029
| |||||| ||||| |||| || | |||||| || ||||| ||| ||
Sbjct 4481 GACTTGTACATCTGACATGAATCGAGAAGCGAGATTTTCGAGGACGATTCCGTCAGATGC 4540
Query 40030 GGCAAAAAATGCCAATACATGTTTAATAAAATATTTTTCATCGGGTGTCAATTTATTCCA 40089
||| || || || | || ||||| || || | ||| || | | || | |||
Sbjct 4541 GGCGAAGAAGGCGAGGACGTGTTTGATGAAGTGACGTTCTCCGTCGTTGAGATTTTCCCA 4600
Query 40090 GTCATTGATATCTTTTGATATATCTACTTCTTCAGCTGTCCAAAACGACGCCTCTGCCTT 40149
|||| |||| ||||| |||||||||||| || ||||| || || || || || ||
Sbjct 4601 GTCACGTCCGTCTTGTGATAGATCTACTTCTTCGGCGGTCCAGAAGGATGCTTCGGCTTT 4660
Query 40150 TTTGTACATGTTCCATATATCACGATATTGTATTGGAAAAATAACAAATCT 40200
|||||||| | ||| || | | || || || ||||| ||| |||||
Sbjct 4661 CTTGTACATCTCCCAGATCTGTGGGTAGTGAATCGGAAACATACAGAATCT 4711
>seq100826
Length=54576
Score = 152 bits (168), Expect = 7e-32
Identities = 167/222 (75%), Gaps = 0/222 (0%)
Strand=Plus/Plus
Query 69750 TCCTCCCTGATCTATGTATCTGGCAGTGTTATTATAGACTCTCAGCATCGGAATAATACC 69809
|||||| ||||| | || | ||||| | ||| | || | ||||||||||| ||||||
Sbjct 29539 TCCTCCTTGATCAACATACCGAGCAGTATCATTGAATACACGCAGCATCGGAACAATACC 29598
Query 69810 ATTAGATTTACCATTTGTTCCAGAAATATAACTTCCTCTTGCGCGAATATTACTAATAGA 69869
|||||||| ||||| || ||| |||||||||||| |||||||||||||| ||| ||
Sbjct 29599 ATTAGATTCTCCATTAGTGCCACGAATATAACTTCCAGTTGCGCGAATATTATGAATCGA 29658
Query 69870 TAGACCTATTCCTCCTGCCATTTTAGAGATTAGAGCACAACGTTTCAATGTGTCATATAT 69929
| ||| || || || || |||| || |||||| |||||| |||||||||||
Sbjct 29659 AACACCAATACCACCAGCTGATTTACTTATAGCAGCACACTCTTTCAAAGTGTCATATAT 29718
Query 69930 ACCCTCTATGCTATCATCTATCATGTTAAGAAGAAAACAGCT 69971
||||| ||||||||||| |||| | |||||| |||||
Sbjct 29719 CCCCTCGATGCTATCATCCTTCATACAGACAAGAAAGCAGCT 29760
>seq205226
Length=4968
Score = 140 bits (154), Expect = 4e-28
Identities = 164/222 (74%), Gaps = 0/222 (0%)
Strand=Plus/Plus
Query 69750 TCCTCCCTGATCTATGTATCTGGCAGTGTTATTATAGACTCTCAGCATCGGAATAATACC 69809
|||||| ||||| | || | ||||| | |||| | || | ||||||||||| ||||||
Sbjct 4506 TCCTCCTTGATCAACATACCGCGCAGTATCATTAAACACCCGCAGCATCGGAACAATACC 4565
Query 69810 ATTAGATTTACCATTTGTTCCAGAAATATAACTTCCTCTTGCGCGAATATTACTAATAGA 69869
|||||||| ||||| || ||| | ||||||||||| ||||||||||||| ||| ||
Sbjct 4566 ATTAGATTCTCCATTCGTGCCACAGATATAACTTCCAGTTGCGCGAATATTGTGAATCGA 4625
Query 69870 TAGACCTATTCCTCCTGCCATTTTAGAGATTAGAGCACAACGTTTCAATGTGTCATATAT 69929
| ||| || || || || |||| || |||||| |||||| || ||||| ||
Sbjct 4626 AACACCAATACCACCAGCTGATTTACTTATCGCAGCACACTCTTTCAACGTATCATAAAT 4685
Query 69930 ACCCTCTATGCTATCATCTATCATGTTAAGAAGAAAACAGCT 69971
||||| ||||||||||| |||| | ||||| |||||
Sbjct 4686 TCCCTCGATGCTATCATCCTTCATACAGACGAGAAAGCAGCT 4727
Score = 86.0 bits (94), Expect = 9e-12
Identities = 139/200 (70%), Gaps = 0/200 (0%)
Strand=Plus/Plus
Query 68734 AACACTCTACGAGTGTAAATATTACTGGTATATGGTTCCACAGATTCATTATTTCCCAGA 68793
|| ||||||||| | ||||| || |||||| ||||| | | |||||||||| || |||
Sbjct 2737 AAGACTCTACGACTATAAATGTTTGAGGTATACGGTTCAAAACATTCATTATTCCCGAGA 2796
Query 68794 ATTTGAGCAGTTGATGCAGTTGGCATAGGTGCCACCAATAAACTATTTCTAAGACCATGT 68853
|| || ||||| ||||||||||| |||||||| | | | |||||| | ||||
Sbjct 2797 ATCTGGCTGGTTGAAGCAGTTGGCATCGGTGCCACTAGAAGAGAATTTCTGATTCCATTC 2856
Query 68854 GTTATGATTTTATCTTTTAGATGTTTCCAATCCCAAAGATCAGATGGTACAACATTCCAA 68913
|| || |||| | || |||| ||||| | || || || | ||||||||
Sbjct 2857 TTTGAAATCATATCCCTGAGTGCAGTCCAGTCCCAGCGGTCCGAGGGAATTACATTCCAC 2916
Query 68914 AGATCGTATTGTAGAATTCC 68933
| ||| ||| ||||| ||
Sbjct 2917 ATATCAGGTTGAAGAATACC 2936
>seq191921
Length=6033
Score = 91.5 bits (100), Expect = 2e-13
Identities = 118/163 (72%), Gaps = 0/163 (0%)
Strand=Plus/Plus
Query 69792 CAGCATCGGAATAATACCATTAGATTTACCATTTGTTCCAGAAATATAACTTCCTCTTGC 69851
|| ||| |||| |||||||||||| | ||||| || || ||| |||||||| ||||
Sbjct 4145 CAACATTGGAACAATACCATTAGACGTTCCATTGGTGCCTCGAATGTAACTTCCAGTTGC 4204
Query 69852 GCGAATATTACTAATAGATAGACCTATTCCTCCTGCCATTTTAGAGATTAGAGCACAACG 69911
|| |||||| || || | ||| || || || || ||| || | ||||||
Sbjct 4205 ACGGATATTATGAACTGAAACACCAATGCCACCAGCAGATTTGCTTATAACAGCACACTC 4264
Query 69912 TTTCAATGTGTCATATATACCCTCTATGCTATCATCTATCATG 69954
||| | ||| |||||||| ||||| ||||| |||||| |||||
Sbjct 4265 TTTGAGTGTTTCATATATGCCCTCAATGCTGTCATCTTTCATG 4307
>seq164072
Length=359
Score = 84.2 bits (92), Expect = 3e-11
Identities = 94/126 (75%), Gaps = 0/126 (0%)
Strand=Plus/Minus
Query 69549 AGGACATTCATTTGGACACATCAATGACCACACATCATCATCCTTAACTCGTTTCATAAA 69608
|||||||| | |||||||| || ||| | |||| ||| ||| ||| |||||||
Sbjct 359 AGGACATTTACGAGGACACATTAAGCTCCAAGGTTGATCAGCCTCAACACGTCTCATAAA 300
Query 69609 TAGATCGGGAATCCAAAGAGCTATAAAGAGATCTCTGGTTCTATTTTCTTCATTTCCTGT 69668
| ||| || ||||||||||| | ||| | |||||| ||| | | ||||| ||| || ||
Sbjct 299 TTCATCAGGTATCCAAAGAGCCAAAAATAAATCTCTAGTTTTTTCTTCTTTATTGCCAGT 240
Query 69669 ATTTTT 69674
||||||
Sbjct 239 ATTTTT 234
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 684614284189920
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