Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Arabis_20nordmanniana_20[genbank_20GCA_5F001484925.1_202016-01-04] 267,228 sequences; 342,306,570 total letters Query= NC_027213.1 Length=214699 Score E Sequences producing significant alignments: (Bits) Value seq27195 228 1e-54 seq146431 197 2e-45 seq100826 152 7e-32 seq205226 140 4e-28 seq191921 91.5 2e-13 seq164072 84.2 3e-11 >seq27195 Length=13093 Score = 228 bits (252), Expect = 1e-54 Identities = 584/881 (66%), Gaps = 10/881 (1%) Strand=Plus/Minus Query 39325 TTTTTGGTATTCACCAACGCGTTTCTCGAAAAAATTAGTTTTGCCTTCCAATGATATATT 39384 ||| ||||| |||||||| | ||||| ||||| |||||||| |||| | || || Sbjct 9523 TTTCTGGTAATCACCAACTCTCTTCTCAAAAAAGTTAGTTTTCCCTTGAAGCGAGATTAA 9464 Query 39385 TTCCATGAAATCAAACGGATTAGTTGCATTATAtttttttttAAATCCTAATTCTGAAAT 39444 ||||| |||||||||||||||| || || || | | || | | | Sbjct 9463 CTCCATCCAATCAAACGGATTAGTCACACCGTACACCTTACCATACCCAAGCGCACCCAA 9404 Query 39445 CAATCTATCTGCAACAAATTCTATGTATGTTTTCATCATTTCACAATTCATTCCTATGAG 39504 | ||||| |||||||| || || || |||||| ||||| |||||| |||| | Sbjct 9403 AAGCCTATCCGCAACAAACTCAATATACTCACTCATCAATTCACGATTCATCCCTACCAA 9344 Query 39505 TTTAACTGGTAGAGCCTCCGTTAGAAACTCTTTTTCGATGTCTACGGCCTCTGTTATTAT 39564 || || || || | ||||||| | ||||| || || || || | || Sbjct 9343 CGCGCACGGAAGCGCGTCGCACACAAACTCTCTCTCGATCTCCACAGCGTCGCACACAAT 9284 Query 39565 CGATGTTACTACCTCATCACTCGG--TGGATGCAATAAATGTTTAAACATTAAGCAGGCG 39622 ||| | ||| ||| || || | | | | | || ||| || | | | ||| ||| Sbjct 9283 CGACTTCACTCGCTCCTCCGTCAGCTTCGTTCGGAGAAGTGTGTAGA--TCAGGCAAGCG 9226 Query 39623 AAGTCACAATGTAGGCCCTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGTCCAGGC 39682 || || || |||| ||| || |||| ||||| ||||| || || || | |||||| Sbjct 9225 AAATCGCAGTGTAAGCCTTCGTCTCGTGAGATTAACTCGTTTGAGAAAGTTAACCCAGGC 9166 Query 39683 ATTAGACCACGCTTTTTGAGCCAAAATATGGCAGCAAAAGAT-CCAGAAAAGAAGATGCC 39741 || || || || ||||||||||| || || | | || ||| | || || |||||||| || Sbjct 9165 ATGAGCCCTCGTTTTTTGAGCCAGAAAATCGAA-CAGAAGCTACCGGAGAAGAAGATACC 9107 Query 39742 TTCTACTGCTGCAAATGCAACAAGTCTCTCTCCGTAACT-TGT-ATCATTATGTATCCAC 39799 ||| || || || || || | || || || || | || ||| || ||||| Sbjct 9106 TTCGACGCACGCGAAAGCGACGATTCGTTCAGCGAAAGTCTGAGATCC--ATCGATCCAT 9049 Query 39800 TTCTGTGCCCAATCAGCTTTCTTCTTTACACAAGGCATTGTTTCTATAGCATTAAAGAGA 39859 || ||||| | ||||||||| || ||||| |||||||| || || |||||| Sbjct 9048 GTCATAGCCCATTGAGCTTTCTTAGCGACGCAAGGGATTGTTTCGATTGCGCGGAAGAGA 8989 Query 39860 TAATGTTTTTCATCACTATCTTTAACATATGTATCTATTAACAGACTATACATTTCTGAA 39919 | || | | || | ||||||| | |||||||| | | ||||||||||| || ||| Sbjct 8988 TGATCTCTCTCTTTGTTATCTTTGATGTATGTATCCAGAAGGAGACTATACATCTCAGAA 8929 Query 39920 TGGATGTTTTCAATCGCCATCTGAAATCCGTAAAAACATCTTGCTTCAGTAATTTGTACC 39979 ||||| || |||||||| ||||| |||||||| ||| | ||||||| | |||||| Sbjct 8928 TGGATATTCTCAATCGCGATCTGGAATCCGTAGAAAGCACGCGCTTCAGAGACTTGTACA 8869 Query 39980 TCTGAACAAAATCTTTCCGCCAAATTTTCATTCACTATTCCATCACTAGCGGCAAAAAAT 40039 ||||| |||| || | ||| || || ||||| ||| ||||| || || Sbjct 8868 TCTGACATGAATCGAGAAGCGAGATTCTCTAGAACGATTCCGTCAGATGCGGCGAAGAAA 8809 Query 40040 GCCAATACATGTTTAATAAAATATTTTTCATCGGGTGTCAATTTATTCCAGTCATTGATA 40099 || | || ||||| || || | ||| || | | || | ||||||| Sbjct 8808 GCGAGGACGTGTTTGATGAAGTGACGTTCTCCGTCGTTGAGATTCTCCCAGTCACGTCCG 8749 Query 40100 TCTTTTGATATATCTACTTCTTCAGCTGTCCAAAACGACGCCTCTGCCTTTTTGTACATG 40159 |||| ||||| |||||||||||| || ||||| ||||| || || || || |||||||| Sbjct 8748 TCTTGTGATAGATCTACTTCTTCGGCGGTCCAGAACGATGCTTCGGCTTTCTTGTACATC 8689 Query 40160 TTCCATATATCACGATATTGTATTGGAAAAATAACAAATCT 40200 | ||| || | | || || || ||||| ||| ||||| Sbjct 8688 TCCCAGATCTGTGGGTAGTGAATCGGAAACATACAGAATCT 8648 >seq146431 Length=15796 Score = 197 bits (218), Expect = 2e-45 Identities = 400/591 (68%), Gaps = 2/591 (0%) Strand=Plus/Plus Query 39611 ATTAAGCAGGCGAAGTCACAATGTAGGCCCTCATCTCTACTAATTAATTCGTTAGAAAAT 39670 || || || ||||| ||||| |||| || || |||| || ||||||||||| || Sbjct 4122 ATCAAACAAGCGAAATCACAGTGTAAACCTTCGTCTCGTGAGATCAATTCGTTAGAGAAG 4181 Query 39671 GTGAGTCCAGGCATTAGACCACGCTTTTTGAGCCAAAATATGGCAGCAAAAGAT-CCAGA 39729 || | ||||||||| || ||||| || || ||||| || || | | || ||| | || || Sbjct 4182 GTTAATCCAGGCATGAGTCCACGTTTCTTAAGCCAGAAAATCGAA-CAGAAGCTACCTGA 4240 Query 39730 AAAGAAGATGCCTTCTACTGCTGCAAATGCAACAAGTCTCTCTCCGTAACTTGTATCATT 39789 |||||||| ||||| || || || || || | || || | || || | Sbjct 4241 GAAGAAGATACCTTCAACACAAGCGAAAGCTACGATTCGTTCAGCAAAAGTTTGAGATCC 4300 Query 39790 ATGTATCCACTTCTGTGCCCAATCAGCTTTCTTCTTTACACAAGGCATTGTTTCTATAGC 39849 || ||||| || ||||| | ||||||||| |||||||| |||||||| | || Sbjct 4301 ATCGATCCAAGTCATAGCCCATTGAGCTTTCTTAGCAACACAAGGAATTGTTTCGACTGC 4360 Query 39850 ATTAAAGAGATAATGTTTTTCATCACTATCTTTAACATATGTATCTATTAACAGACTATA 39909 || |||| || | | || | ||||||| | || ||||| | ||| |||||||| Sbjct 4361 GCGGAATAGATGATCTCTCTCTTTGTTATCTTTGATGTAAGTATCGAGTAAGAGACTATA 4420 Query 39910 CATTTCTGAATGGATGTTTTCAATCGCCATCTGAAATCCGTAAAAACATCTTGCTTCAGT 39969 ||| || |||||||| || |||||||| || ||||||||||| || | ||||| | Sbjct 4421 CATCTCAGAATGGATATTCTCAATCGCGATTTGAAATCCGTAGAATGCACGCGCTTCGGA 4480 Query 39970 AATTTGTACCTCTGAACAAAATCTTTCCGCCAAATTTTCATTCACTATTCCATCACTAGC 40029 | |||||| ||||| |||| || | |||||| || ||||| ||| || Sbjct 4481 GACTTGTACATCTGACATGAATCGAGAAGCGAGATTTTCGAGGACGATTCCGTCAGATGC 4540 Query 40030 GGCAAAAAATGCCAATACATGTTTAATAAAATATTTTTCATCGGGTGTCAATTTATTCCA 40089 ||| || || || | || ||||| || || | ||| || | | || | ||| Sbjct 4541 GGCGAAGAAGGCGAGGACGTGTTTGATGAAGTGACGTTCTCCGTCGTTGAGATTTTCCCA 4600 Query 40090 GTCATTGATATCTTTTGATATATCTACTTCTTCAGCTGTCCAAAACGACGCCTCTGCCTT 40149 |||| |||| ||||| |||||||||||| || ||||| || || || || || || Sbjct 4601 GTCACGTCCGTCTTGTGATAGATCTACTTCTTCGGCGGTCCAGAAGGATGCTTCGGCTTT 4660 Query 40150 TTTGTACATGTTCCATATATCACGATATTGTATTGGAAAAATAACAAATCT 40200 |||||||| | ||| || | | || || || ||||| ||| ||||| Sbjct 4661 CTTGTACATCTCCCAGATCTGTGGGTAGTGAATCGGAAACATACAGAATCT 4711 >seq100826 Length=54576 Score = 152 bits (168), Expect = 7e-32 Identities = 167/222 (75%), Gaps = 0/222 (0%) Strand=Plus/Plus Query 69750 TCCTCCCTGATCTATGTATCTGGCAGTGTTATTATAGACTCTCAGCATCGGAATAATACC 69809 |||||| ||||| | || | ||||| | ||| | || | ||||||||||| |||||| Sbjct 29539 TCCTCCTTGATCAACATACCGAGCAGTATCATTGAATACACGCAGCATCGGAACAATACC 29598 Query 69810 ATTAGATTTACCATTTGTTCCAGAAATATAACTTCCTCTTGCGCGAATATTACTAATAGA 69869 |||||||| ||||| || ||| |||||||||||| |||||||||||||| ||| || Sbjct 29599 ATTAGATTCTCCATTAGTGCCACGAATATAACTTCCAGTTGCGCGAATATTATGAATCGA 29658 Query 69870 TAGACCTATTCCTCCTGCCATTTTAGAGATTAGAGCACAACGTTTCAATGTGTCATATAT 69929 | ||| || || || || |||| || |||||| |||||| ||||||||||| Sbjct 29659 AACACCAATACCACCAGCTGATTTACTTATAGCAGCACACTCTTTCAAAGTGTCATATAT 29718 Query 69930 ACCCTCTATGCTATCATCTATCATGTTAAGAAGAAAACAGCT 69971 ||||| ||||||||||| |||| | |||||| ||||| Sbjct 29719 CCCCTCGATGCTATCATCCTTCATACAGACAAGAAAGCAGCT 29760 >seq205226 Length=4968 Score = 140 bits (154), Expect = 4e-28 Identities = 164/222 (74%), Gaps = 0/222 (0%) Strand=Plus/Plus Query 69750 TCCTCCCTGATCTATGTATCTGGCAGTGTTATTATAGACTCTCAGCATCGGAATAATACC 69809 |||||| ||||| | || | ||||| | |||| | || | ||||||||||| |||||| Sbjct 4506 TCCTCCTTGATCAACATACCGCGCAGTATCATTAAACACCCGCAGCATCGGAACAATACC 4565 Query 69810 ATTAGATTTACCATTTGTTCCAGAAATATAACTTCCTCTTGCGCGAATATTACTAATAGA 69869 |||||||| ||||| || ||| | ||||||||||| ||||||||||||| ||| || Sbjct 4566 ATTAGATTCTCCATTCGTGCCACAGATATAACTTCCAGTTGCGCGAATATTGTGAATCGA 4625 Query 69870 TAGACCTATTCCTCCTGCCATTTTAGAGATTAGAGCACAACGTTTCAATGTGTCATATAT 69929 | ||| || || || || |||| || |||||| |||||| || ||||| || Sbjct 4626 AACACCAATACCACCAGCTGATTTACTTATCGCAGCACACTCTTTCAACGTATCATAAAT 4685 Query 69930 ACCCTCTATGCTATCATCTATCATGTTAAGAAGAAAACAGCT 69971 ||||| ||||||||||| |||| | ||||| ||||| Sbjct 4686 TCCCTCGATGCTATCATCCTTCATACAGACGAGAAAGCAGCT 4727 Score = 86.0 bits (94), Expect = 9e-12 Identities = 139/200 (70%), Gaps = 0/200 (0%) Strand=Plus/Plus Query 68734 AACACTCTACGAGTGTAAATATTACTGGTATATGGTTCCACAGATTCATTATTTCCCAGA 68793 || ||||||||| | ||||| || |||||| ||||| | | |||||||||| || ||| Sbjct 2737 AAGACTCTACGACTATAAATGTTTGAGGTATACGGTTCAAAACATTCATTATTCCCGAGA 2796 Query 68794 ATTTGAGCAGTTGATGCAGTTGGCATAGGTGCCACCAATAAACTATTTCTAAGACCATGT 68853 || || ||||| ||||||||||| |||||||| | | | |||||| | |||| Sbjct 2797 ATCTGGCTGGTTGAAGCAGTTGGCATCGGTGCCACTAGAAGAGAATTTCTGATTCCATTC 2856 Query 68854 GTTATGATTTTATCTTTTAGATGTTTCCAATCCCAAAGATCAGATGGTACAACATTCCAA 68913 || || |||| | || |||| ||||| | || || || | |||||||| Sbjct 2857 TTTGAAATCATATCCCTGAGTGCAGTCCAGTCCCAGCGGTCCGAGGGAATTACATTCCAC 2916 Query 68914 AGATCGTATTGTAGAATTCC 68933 | ||| ||| ||||| || Sbjct 2917 ATATCAGGTTGAAGAATACC 2936 >seq191921 Length=6033 Score = 91.5 bits (100), Expect = 2e-13 Identities = 118/163 (72%), Gaps = 0/163 (0%) Strand=Plus/Plus Query 69792 CAGCATCGGAATAATACCATTAGATTTACCATTTGTTCCAGAAATATAACTTCCTCTTGC 69851 || ||| |||| |||||||||||| | ||||| || || ||| |||||||| |||| Sbjct 4145 CAACATTGGAACAATACCATTAGACGTTCCATTGGTGCCTCGAATGTAACTTCCAGTTGC 4204 Query 69852 GCGAATATTACTAATAGATAGACCTATTCCTCCTGCCATTTTAGAGATTAGAGCACAACG 69911 || |||||| || || | ||| || || || || ||| || | |||||| Sbjct 4205 ACGGATATTATGAACTGAAACACCAATGCCACCAGCAGATTTGCTTATAACAGCACACTC 4264 Query 69912 TTTCAATGTGTCATATATACCCTCTATGCTATCATCTATCATG 69954 ||| | ||| |||||||| ||||| ||||| |||||| ||||| Sbjct 4265 TTTGAGTGTTTCATATATGCCCTCAATGCTGTCATCTTTCATG 4307 >seq164072 Length=359 Score = 84.2 bits (92), Expect = 3e-11 Identities = 94/126 (75%), Gaps = 0/126 (0%) Strand=Plus/Minus Query 69549 AGGACATTCATTTGGACACATCAATGACCACACATCATCATCCTTAACTCGTTTCATAAA 69608 |||||||| | |||||||| || ||| | |||| ||| ||| ||| ||||||| Sbjct 359 AGGACATTTACGAGGACACATTAAGCTCCAAGGTTGATCAGCCTCAACACGTCTCATAAA 300 Query 69609 TAGATCGGGAATCCAAAGAGCTATAAAGAGATCTCTGGTTCTATTTTCTTCATTTCCTGT 69668 | ||| || ||||||||||| | ||| | |||||| ||| | | ||||| ||| || || Sbjct 299 TTCATCAGGTATCCAAAGAGCCAAAAATAAATCTCTAGTTTTTTCTTCTTTATTGCCAGT 240 Query 69669 ATTTTT 69674 |||||| Sbjct 239 ATTTTT 234 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 684614284189920