Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Arabis_20nordmanniana_20[genbank_20GCA_5F001484925.1_202016-01-04]
267,228 sequences; 342,306,570 total letters
Query= NC_027335.1
Length=145518
Score E
Sequences producing significant alignments: (Bits) Value
seq158858 178 1e-39
seq151743 98.7 9e-16
seq149378 86.0 6e-12
seq230105 82.4 7e-11
>seq158858
Length=235449
Score = 178 bits (196), Expect = 1e-39
Identities = 521/791 (66%), Gaps = 24/791 (3%)
Strand=Plus/Plus
Query 102904 AAGGAGAGAATATA---TGAAAGTAATCAATTATGGTAGTAATTATGAGATTTATGCAAA 102960
|||||| |||||| ||||| | || || | || |||| |||| | ||||| | |
Sbjct 171592 AAGGAGC-AATATAAAATGAAAATTATTAACTTCGGAAGTACTTATAAAATTTACGGTGA 171650
Query 102961 CGACCTGAAAACTTATGATAAGTTGCCTGCGCAAACTTATAAAGTTAGATTCAACCCAAT 103020
||| | ||||||||||| || | || || || || ||||| |||||| ||||
Sbjct 171651 TGACTTAAAAACTTATGACAAACTACCAGCTGCTACATACAAAGTAGAATTCAATCCAAG 171710
Query 103021 GTCTGGGTTCTCATTGGCGGTGACAGACGATTTTAAATTGAAAGAATCTAAAGTTTATGG 103080
|| || ||||| || | | || || | ||| ||| | ||| | || |||||||
Sbjct 171711 ATCAGGTTTCTCTTTAGAGAAGATTGATAACTTTGAATCAACGGAAGCAAAGATTTATGG 171770
Query 103081 ---TGACCGTTTAGTTAAAATTGAGAAAGTACTACACACATTTAAAACAATCAATCGTAG 103137
| ||| || |||||| | |||||| || | ||| | ||| | | | |||||
Sbjct 171771 AAGTCACCC---AGAAAAAATTAATAAAGTATTAAAATCATATGAAAAATTTGAACGTAG 171827
Query 103138 TTTAGGGGTTATTTTAAGTGGGGATAAAGGAATTGGTAAATCACTATTTACTCAAATCTT 103197
||||| |||| || ||||| | |||||||| |||||||| | ||| |||| |||
Sbjct 171828 CTTAGGTCTTATCTTGAGTGGTAACAAAGGAATGGGTAAATCTATGTTTGTTCAA--CTT 171885
Query 103198 ATCTCA--ACGAGCTATTGAAGAGGGTATGCCTGTTATCTTAATTACAGAAGCTTATCCG 103255
|| || | || | || || ||| || || ||||| | ||||| | || | ||
Sbjct 171886 ATTGCAGAAGCAGTTGTTAAAAAGGAAATCCCGGTTATTATGGTTACAAAGGCATTCCCA 171945
Query 103256 GGTATTGCAGAATTTATTGACAGTATTGACCAAGAGTCTCTTATCTTGTTCGATGAATTT 103315
|| ||||| || || ||||| ||||||||||| | | || | || ||||| |||
Sbjct 171946 GGGATTGCTGATTTCATTGAACAAATTGACCAAGAAGCATTAATTATCTTGGATGAGTTT 172005
Query 103316 GAAAAAGTATTCAATGACCG---TGACGGTCGTGAATCACAAGAAAAACTATTGAGCTTA 103372
||||| | |||||| || ||| | ||| ||| ||||| || || | |||
Sbjct 172006 GAAAAGATGTTCAATCCTCGTAATGAAGAAGCAGAAAAACAGGAAAACTTACTGGGGTTA 172065
Query 103373 TTCGATGG--GTTATCACAACGCAAGCGTATTTATGCACTTACTGTTAATAACTTAAATC 103430
|| ||||| || ||| || || ||||| ||||| |||| || || | | |||
Sbjct 172066 TTTGATGGTACTTCTCAGAA--GAAACGTATCTATGCGATTACGGTAAACGATCTTAATA 172123
Query 103431 GTGTAAATGACTTTATGCTTAATCGTCCGGGACGTTTCCATTACCATTTACGTTTCGACT 103490
|||||||| |||||| | | ||||| || || |||||||||||| | || || || |
Sbjct 172124 AGGTAAATGAGTTTATGTTAAGCCGTCCTGGTCGATTCCATTACCATATCCGATTTGATT 172183
Query 103491 ATCCTGATGCAGACGAAATTCGTACTTACTTGCAAGATAAGTTAGACAAAGCTTACTATG 103550
|||| ||| |||||| | ||| | |||| || | | || || |||
Sbjct 172184 ATCCAACTGCTACTGAAATTGAAATCTACCTAAAAGACAAAATTGCTGAACAGTATCATG 172243
Query 103551 GGGAAATTGACAGTGTTGTTAAGTTTAGCCGTAGAATTAAGTTAAACTATGATTGCTTAC 103610
| ||||| | |||||| ||| | | | |||||||| || || ||||||
Sbjct 172244 GTGAAATCAAGCATGTTGTAGCATTTGCAAATCGTGTAAAGTTAAATTACGACAGCTTAC 172303
Query 103611 GAGCAATTGCGTTGGAATTAAGCTTTGGCATCT-CATTTGGTGAAGCTATTGCTGATTTG 103669
| || |||||||| ||||||| | || | | |||| || ||||||| ||||||
Sbjct 172304 GTGCGATTGCGTTTGAATTAA-ATGAGGGTTATACATTCCGTTCTGCTATTGGTGATTTA 172362
Query 103670 AACATCCTTAA 103680
|| || |||||
Sbjct 172363 AATAT-CTTAA 172372
>seq151743
Length=442
Score = 98.7 bits (108), Expect = 9e-16
Identities = 107/138 (78%), Gaps = 7/138 (5%)
Strand=Plus/Minus
Query 96047 TTATCTAGTTCTCACTAACTCCTTTTAGTTAGCTACCTAGAAATTTAGTCGTTAGGCTTT 96106
|||||| |||||||||| || ||| ||||||| ||||||||||||||||||| ||
Sbjct 397 TTATCTGGTTCTCACTAGTACCATTTTACCAGCTACCCAGAAATTTAGTCGTTAGGCATT 338
Query 96107 TACAG-TTATAGTATAACTGATTTAGCACGGTAGGTCAACCCTGTCCTTATACACTAGGA 96165
||||| | ||| | ||||||||||||||||||| ||| || || | | | ||
Sbjct 337 TACAGCTCATA--CGAGCTGATTTAGCACGGTAGGTTAACATTGCCCAT-TGC---TGGG 284
Query 96166 TTTAGTCTCTCTTACCAG 96183
||||||||||||||| ||
Sbjct 283 TTTAGTCTCTCTTACTAG 266
>seq149378
Length=35185
Score = 86.0 bits (94), Expect = 6e-12
Identities = 106/145 (73%), Gaps = 0/145 (0%)
Strand=Plus/Minus
Query 87881 CCTGTTGCACCACCATTGTTAGGGAAGTTTATCTCTGCGGGGTCAATTCCATACAAAGCA 87940
|| || || || ||| ||||| ||||| || ||| | || | |||| || | |||
Sbjct 23288 CCAGTAGCTCCCCCACGATTAGGAAAGTTAATTTCTTCTGGCTGAATTTGGTAAACGGCA 23229
Query 87941 GATATAACATTAATTAAGTAGTTAAGCCATTTTTCAAATTGCATATCATTAGCAGAGGGT 88000
| ||||||| ||||| |||||| | | |||||||||| |||||| ||| || ||
Sbjct 23228 GCAATAACATAAATTAGGTAGTTCAAAAACTTTTCAAATTCCATATCCTTACTAGTCTGT 23169
Query 88001 GTCATGTTAACAAATTTTACATCTT 88025
|||||||||||||| || ||||||
Sbjct 23168 GTCATGTTAACAAACTTAGCATCTT 23144
>seq230105
Length=2871
Score = 82.4 bits (90), Expect = 7e-11
Identities = 60/70 (86%), Gaps = 0/70 (0%)
Strand=Plus/Minus
Query 102479 TTAGCTCAGTTGGTCAGAGCATTCGGCTCATAACCGAACGGTCGCAGGTTCGAGACCTGC 102538
||||||||| |||| ||||| ||||||||||||| |||||||||||||||| |||||
Sbjct 2867 TTAGCTCAGCTGGTTAGAGCTGACGGCTCATAACCGTCCGGTCGCAGGTTCGAGTCCTGC 2808
Query 102539 AATGTCCATT 102548
| |||||||
Sbjct 2807 AGGGTCCATT 2798
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 463974568200640
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |