Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Arabis_20nordmanniana_20[genbank_20GCA_5F001484925.1_202016-01-04] 267,228 sequences; 342,306,570 total letters Query= NC_027335.1 Length=145518 Score E Sequences producing significant alignments: (Bits) Value seq158858 178 1e-39 seq151743 98.7 9e-16 seq149378 86.0 6e-12 seq230105 82.4 7e-11 >seq158858 Length=235449 Score = 178 bits (196), Expect = 1e-39 Identities = 521/791 (66%), Gaps = 24/791 (3%) Strand=Plus/Plus Query 102904 AAGGAGAGAATATA---TGAAAGTAATCAATTATGGTAGTAATTATGAGATTTATGCAAA 102960 |||||| |||||| ||||| | || || | || |||| |||| | ||||| | | Sbjct 171592 AAGGAGC-AATATAAAATGAAAATTATTAACTTCGGAAGTACTTATAAAATTTACGGTGA 171650 Query 102961 CGACCTGAAAACTTATGATAAGTTGCCTGCGCAAACTTATAAAGTTAGATTCAACCCAAT 103020 ||| | ||||||||||| || | || || || || ||||| |||||| |||| Sbjct 171651 TGACTTAAAAACTTATGACAAACTACCAGCTGCTACATACAAAGTAGAATTCAATCCAAG 171710 Query 103021 GTCTGGGTTCTCATTGGCGGTGACAGACGATTTTAAATTGAAAGAATCTAAAGTTTATGG 103080 || || ||||| || | | || || | ||| ||| | ||| | || ||||||| Sbjct 171711 ATCAGGTTTCTCTTTAGAGAAGATTGATAACTTTGAATCAACGGAAGCAAAGATTTATGG 171770 Query 103081 ---TGACCGTTTAGTTAAAATTGAGAAAGTACTACACACATTTAAAACAATCAATCGTAG 103137 | ||| || |||||| | |||||| || | ||| | ||| | | | ||||| Sbjct 171771 AAGTCACCC---AGAAAAAATTAATAAAGTATTAAAATCATATGAAAAATTTGAACGTAG 171827 Query 103138 TTTAGGGGTTATTTTAAGTGGGGATAAAGGAATTGGTAAATCACTATTTACTCAAATCTT 103197 ||||| |||| || ||||| | |||||||| |||||||| | ||| |||| ||| Sbjct 171828 CTTAGGTCTTATCTTGAGTGGTAACAAAGGAATGGGTAAATCTATGTTTGTTCAA--CTT 171885 Query 103198 ATCTCA--ACGAGCTATTGAAGAGGGTATGCCTGTTATCTTAATTACAGAAGCTTATCCG 103255 || || | || | || || ||| || || ||||| | ||||| | || | || Sbjct 171886 ATTGCAGAAGCAGTTGTTAAAAAGGAAATCCCGGTTATTATGGTTACAAAGGCATTCCCA 171945 Query 103256 GGTATTGCAGAATTTATTGACAGTATTGACCAAGAGTCTCTTATCTTGTTCGATGAATTT 103315 || ||||| || || ||||| ||||||||||| | | || | || ||||| ||| Sbjct 171946 GGGATTGCTGATTTCATTGAACAAATTGACCAAGAAGCATTAATTATCTTGGATGAGTTT 172005 Query 103316 GAAAAAGTATTCAATGACCG---TGACGGTCGTGAATCACAAGAAAAACTATTGAGCTTA 103372 ||||| | |||||| || ||| | ||| ||| ||||| || || | ||| Sbjct 172006 GAAAAGATGTTCAATCCTCGTAATGAAGAAGCAGAAAAACAGGAAAACTTACTGGGGTTA 172065 Query 103373 TTCGATGG--GTTATCACAACGCAAGCGTATTTATGCACTTACTGTTAATAACTTAAATC 103430 || ||||| || ||| || || ||||| ||||| |||| || || | | ||| Sbjct 172066 TTTGATGGTACTTCTCAGAA--GAAACGTATCTATGCGATTACGGTAAACGATCTTAATA 172123 Query 103431 GTGTAAATGACTTTATGCTTAATCGTCCGGGACGTTTCCATTACCATTTACGTTTCGACT 103490 |||||||| |||||| | | ||||| || || |||||||||||| | || || || | Sbjct 172124 AGGTAAATGAGTTTATGTTAAGCCGTCCTGGTCGATTCCATTACCATATCCGATTTGATT 172183 Query 103491 ATCCTGATGCAGACGAAATTCGTACTTACTTGCAAGATAAGTTAGACAAAGCTTACTATG 103550 |||| ||| |||||| | ||| | |||| || | | || || ||| Sbjct 172184 ATCCAACTGCTACTGAAATTGAAATCTACCTAAAAGACAAAATTGCTGAACAGTATCATG 172243 Query 103551 GGGAAATTGACAGTGTTGTTAAGTTTAGCCGTAGAATTAAGTTAAACTATGATTGCTTAC 103610 | ||||| | |||||| ||| | | | |||||||| || || |||||| Sbjct 172244 GTGAAATCAAGCATGTTGTAGCATTTGCAAATCGTGTAAAGTTAAATTACGACAGCTTAC 172303 Query 103611 GAGCAATTGCGTTGGAATTAAGCTTTGGCATCT-CATTTGGTGAAGCTATTGCTGATTTG 103669 | || |||||||| ||||||| | || | | |||| || ||||||| |||||| Sbjct 172304 GTGCGATTGCGTTTGAATTAA-ATGAGGGTTATACATTCCGTTCTGCTATTGGTGATTTA 172362 Query 103670 AACATCCTTAA 103680 || || ||||| Sbjct 172363 AATAT-CTTAA 172372 >seq151743 Length=442 Score = 98.7 bits (108), Expect = 9e-16 Identities = 107/138 (78%), Gaps = 7/138 (5%) Strand=Plus/Minus Query 96047 TTATCTAGTTCTCACTAACTCCTTTTAGTTAGCTACCTAGAAATTTAGTCGTTAGGCTTT 96106 |||||| |||||||||| || ||| ||||||| ||||||||||||||||||| || Sbjct 397 TTATCTGGTTCTCACTAGTACCATTTTACCAGCTACCCAGAAATTTAGTCGTTAGGCATT 338 Query 96107 TACAG-TTATAGTATAACTGATTTAGCACGGTAGGTCAACCCTGTCCTTATACACTAGGA 96165 ||||| | ||| | ||||||||||||||||||| ||| || || | | | || Sbjct 337 TACAGCTCATA--CGAGCTGATTTAGCACGGTAGGTTAACATTGCCCAT-TGC---TGGG 284 Query 96166 TTTAGTCTCTCTTACCAG 96183 ||||||||||||||| || Sbjct 283 TTTAGTCTCTCTTACTAG 266 >seq149378 Length=35185 Score = 86.0 bits (94), Expect = 6e-12 Identities = 106/145 (73%), Gaps = 0/145 (0%) Strand=Plus/Minus Query 87881 CCTGTTGCACCACCATTGTTAGGGAAGTTTATCTCTGCGGGGTCAATTCCATACAAAGCA 87940 || || || || ||| ||||| ||||| || ||| | || | |||| || | ||| Sbjct 23288 CCAGTAGCTCCCCCACGATTAGGAAAGTTAATTTCTTCTGGCTGAATTTGGTAAACGGCA 23229 Query 87941 GATATAACATTAATTAAGTAGTTAAGCCATTTTTCAAATTGCATATCATTAGCAGAGGGT 88000 | ||||||| ||||| |||||| | | |||||||||| |||||| ||| || || Sbjct 23228 GCAATAACATAAATTAGGTAGTTCAAAAACTTTTCAAATTCCATATCCTTACTAGTCTGT 23169 Query 88001 GTCATGTTAACAAATTTTACATCTT 88025 |||||||||||||| || |||||| Sbjct 23168 GTCATGTTAACAAACTTAGCATCTT 23144 >seq230105 Length=2871 Score = 82.4 bits (90), Expect = 7e-11 Identities = 60/70 (86%), Gaps = 0/70 (0%) Strand=Plus/Minus Query 102479 TTAGCTCAGTTGGTCAGAGCATTCGGCTCATAACCGAACGGTCGCAGGTTCGAGACCTGC 102538 ||||||||| |||| ||||| ||||||||||||| |||||||||||||||| ||||| Sbjct 2867 TTAGCTCAGCTGGTTAGAGCTGACGGCTCATAACCGTCCGGTCGCAGGTTCGAGTCCTGC 2808 Query 102539 AATGTCCATT 102548 | ||||||| Sbjct 2807 AGGGTCCATT 2798 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 463974568200640