Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Arabis_20nordmanniana_20[genbank_20GCA_5F001484925.1_202016-01-04] 267,228 sequences; 342,306,570 total letters Query= NC_027344.1 Length=158099 Score E Sequences producing significant alignments: (Bits) Value seq26767 176 5e-39 seq249537 113 5e-20 seq158858 86.0 6e-12 >seq26767 Length=1149 Score = 176 bits (194), Expect = 5e-39 Identities = 289/417 (69%), Gaps = 0/417 (0%) Strand=Plus/Plus Query 14834 CATCAAATCATTGATTTGCAGACCGTAATCTAGATGACGAATGCGGTTTTCATCTACACC 14893 |||||| | ||| ||||| | | ||||| | ||||| | | ||||| || | || Sbjct 33 CATCAATTTATTAATTTGTACTGCATAATCAACGTGACGTACTCTATTTTCTTCAATGCC 92 Query 14894 TTTGTTGTTCTTTAATACCAAAAGGTTTTCAACCTCAAGATGCCACATTGGATAATAAAG 14953 | || || ||||| || || | |||||| |||| |||||| ||||||||| | | Sbjct 93 CCTATTATTTTTTAAAACTAATAAACTTTCAATTTCAAAATGCCATATTGGATAAAATAT 152 Query 14954 AGTAGCTGCACCACCACGGACACCGCCTTGAGAACAAGATTTTACTGCAGTCTGAAAATG 15013 ||| || || ||||| | || || ||||||||||| |||||||| ||| | |||||||| Sbjct 153 AGTTGCCGCTCCACCTCTAACTCCTCCTTGAGAACAGGATTTTACAGCACTTTGAAAATG 212 Query 15014 TTTCCAGAAAGGAATTACGCCAGTATGTTTTACTTCGCCATTACCAATTTTTGAGCCTTC 15073 ||| | |||||||| |||||||| | |||||||||| | ||| ||| | Sbjct 213 TTTATAAAAAGGAATACAACCAGTATGAAATGCTTCGCCATTTCTAATAGGACTACCTAC 272 Query 15074 AGCTCGAATCATACCGGCGTTGATGCCTATACCAGCTCGCTTGCTGATATACTTAATAAT 15133 || ||||| | || || || || || || || ||||| | | ||| || | ||| Sbjct 273 TGCACGAATTTTTCCAGCATTAATACCAATTCCTGCTCGTTGAGAAACATATTTTACAAT 332 Query 15134 ACTGTTACTTGCTGCATTAATAGAATTCAGTGAATCGCCAGCTTCAATAACTACACAAGA 15193 | || | | || |||||||||| || ||| || |||||| | ||||| || Sbjct 333 AGAACTAGTAGTAGCGTTAATAGAATCTAGATTATCATCACATTCAATTAAAACACATGA 392 Query 15194 ACTAAACTGACGAGTAGGAGTACGAGCCCCTGCCATAATCGGTGTAGGCAATGAAAT 15250 ||||| || ||||||||||| | | | || | |||||| ||||| || || ||||| Sbjct 393 GCTAAATTGTCGAGTAGGAGTTCTAACTCCAGACATAATTGGTGTCGGTAAAGAAAT 449 >seq249537 Length=1253 Score = 113 bits (124), Expect = 5e-20 Identities = 65/67 (97%), Gaps = 0/67 (0%) Strand=Plus/Minus Query 103771 TGGCCCCTGCTGGACTTGAACCAGCGACCAAGCGATTATGAGTCGCCTGCTCTAACCACT 103830 |||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||| Sbjct 69 TGGCCCCTGCTGGATTTGAACCAGCGACCAAGCGATTATGAGTCGCCTGCTCTTACCACT 10 Query 103831 GAGCTAA 103837 ||||||| Sbjct 9 GAGCTAA 3 >seq158858 Length=235449 Score = 86.0 bits (94), Expect = 6e-12 Identities = 118/161 (73%), Gaps = 3/161 (2%) Strand=Plus/Minus Query 103685 TTGGCTGGGAATACTGGGCTCGAACCAGTGCATCCCGGAATCAAAATCCGGTGCCTTACC 103744 |||||||||||| | | |||||| | ||||| || ||||| || ||||||||| Sbjct 162462 TTGGCTGGGAATGATAGATTCGAACTACCGCATCAGAGAGTCAAAGTCTCTTGCCTTACC 162403 Query 103745 AACTTGGCTAATTCCCAAT-TATTTGGTGGCCCCTGCTGGACTTGAACCAGCGACCAAGC 103803 ||||||||||||||||| || || |||| | || | || | |||| | ||||| | Sbjct 162402 -GCTTGGCTAATTCCCAATATAATTAATGGCTCTTGATTGAATCGAACAATCGACCTCTC 162344 Query 103804 GATTATGAGTCGCCTGCTCTAACC-ACTGAGCTAAGGGGCC 103843 ||||||| | ||||||||| |||||||||| | ||| Sbjct 162343 CCTTATGAGGGGAACGCTCTAACCAACTGAGCTAAAGAGCC 162303 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 504099288381920