Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Arabis_20nordmanniana_20[genbank_20GCA_5F001484925.1_202016-01-04]
267,228 sequences; 342,306,570 total letters
Query= NC_027344.1
Length=158099
Score E
Sequences producing significant alignments: (Bits) Value
seq26767 176 5e-39
seq249537 113 5e-20
seq158858 86.0 6e-12
>seq26767
Length=1149
Score = 176 bits (194), Expect = 5e-39
Identities = 289/417 (69%), Gaps = 0/417 (0%)
Strand=Plus/Plus
Query 14834 CATCAAATCATTGATTTGCAGACCGTAATCTAGATGACGAATGCGGTTTTCATCTACACC 14893
|||||| | ||| ||||| | | ||||| | ||||| | | ||||| || | ||
Sbjct 33 CATCAATTTATTAATTTGTACTGCATAATCAACGTGACGTACTCTATTTTCTTCAATGCC 92
Query 14894 TTTGTTGTTCTTTAATACCAAAAGGTTTTCAACCTCAAGATGCCACATTGGATAATAAAG 14953
| || || ||||| || || | |||||| |||| |||||| ||||||||| | |
Sbjct 93 CCTATTATTTTTTAAAACTAATAAACTTTCAATTTCAAAATGCCATATTGGATAAAATAT 152
Query 14954 AGTAGCTGCACCACCACGGACACCGCCTTGAGAACAAGATTTTACTGCAGTCTGAAAATG 15013
||| || || ||||| | || || ||||||||||| |||||||| ||| | ||||||||
Sbjct 153 AGTTGCCGCTCCACCTCTAACTCCTCCTTGAGAACAGGATTTTACAGCACTTTGAAAATG 212
Query 15014 TTTCCAGAAAGGAATTACGCCAGTATGTTTTACTTCGCCATTACCAATTTTTGAGCCTTC 15073
||| | |||||||| |||||||| | |||||||||| | ||| ||| |
Sbjct 213 TTTATAAAAAGGAATACAACCAGTATGAAATGCTTCGCCATTTCTAATAGGACTACCTAC 272
Query 15074 AGCTCGAATCATACCGGCGTTGATGCCTATACCAGCTCGCTTGCTGATATACTTAATAAT 15133
|| ||||| | || || || || || || || ||||| | | ||| || | |||
Sbjct 273 TGCACGAATTTTTCCAGCATTAATACCAATTCCTGCTCGTTGAGAAACATATTTTACAAT 332
Query 15134 ACTGTTACTTGCTGCATTAATAGAATTCAGTGAATCGCCAGCTTCAATAACTACACAAGA 15193
| || | | || |||||||||| || ||| || |||||| | ||||| ||
Sbjct 333 AGAACTAGTAGTAGCGTTAATAGAATCTAGATTATCATCACATTCAATTAAAACACATGA 392
Query 15194 ACTAAACTGACGAGTAGGAGTACGAGCCCCTGCCATAATCGGTGTAGGCAATGAAAT 15250
||||| || ||||||||||| | | | || | |||||| ||||| || || |||||
Sbjct 393 GCTAAATTGTCGAGTAGGAGTTCTAACTCCAGACATAATTGGTGTCGGTAAAGAAAT 449
>seq249537
Length=1253
Score = 113 bits (124), Expect = 5e-20
Identities = 65/67 (97%), Gaps = 0/67 (0%)
Strand=Plus/Minus
Query 103771 TGGCCCCTGCTGGACTTGAACCAGCGACCAAGCGATTATGAGTCGCCTGCTCTAACCACT 103830
|||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 69 TGGCCCCTGCTGGATTTGAACCAGCGACCAAGCGATTATGAGTCGCCTGCTCTTACCACT 10
Query 103831 GAGCTAA 103837
|||||||
Sbjct 9 GAGCTAA 3
>seq158858
Length=235449
Score = 86.0 bits (94), Expect = 6e-12
Identities = 118/161 (73%), Gaps = 3/161 (2%)
Strand=Plus/Minus
Query 103685 TTGGCTGGGAATACTGGGCTCGAACCAGTGCATCCCGGAATCAAAATCCGGTGCCTTACC 103744
|||||||||||| | | |||||| | ||||| || ||||| || |||||||||
Sbjct 162462 TTGGCTGGGAATGATAGATTCGAACTACCGCATCAGAGAGTCAAAGTCTCTTGCCTTACC 162403
Query 103745 AACTTGGCTAATTCCCAAT-TATTTGGTGGCCCCTGCTGGACTTGAACCAGCGACCAAGC 103803
||||||||||||||||| || || |||| | || | || | |||| | ||||| |
Sbjct 162402 -GCTTGGCTAATTCCCAATATAATTAATGGCTCTTGATTGAATCGAACAATCGACCTCTC 162344
Query 103804 GATTATGAGTCGCCTGCTCTAACC-ACTGAGCTAAGGGGCC 103843
||||||| | ||||||||| |||||||||| | |||
Sbjct 162343 CCTTATGAGGGGAACGCTCTAACCAACTGAGCTAAAGAGCC 162303
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 504099288381920
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |