Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Arabis_20nordmanniana_20[genbank_20GCA_5F001484925.1_202016-01-04]
267,228 sequences; 342,306,570 total letters
Query= NC_027349.1
Length=166977
Score E
Sequences producing significant alignments: (Bits) Value
seq26767 217 2e-51
seq249645 113 5e-20
seq127984 93.3 4e-14
seq252826 84.2 2e-11
>seq26767
Length=1149
Score = 217 bits (240), Expect = 2e-51
Identities = 319/450 (71%), Gaps = 6/450 (1%)
Strand=Plus/Plus
Query 139531 CATCAAATCATTCAGCTGGACGCCATAATCCATATGACGGATACGGTTTTCTTCTACGCC 139590
|||||| | ||| | || || ||||||| | ||||| | | |||||||| | |||
Sbjct 33 CATCAATTTATTAATTTGTACTGCATAATCAACGTGACGTACTCTATTTTCTTCAATGCC 92
Query 139591 TTTGTTATTTTTCAAAACGAGAAGATTTTCAACTTCCAAATGCCAAATAGGATAATAAGC 139650
| |||||||| ||||| | | | |||||| ||| |||||||| || |||||| |
Sbjct 93 CCTATTATTTTTTAAAACTAATAAACTTTCAATTTCAAAATGCCATATTGGATAAAATAT 152
Query 139651 AGTAGCAGCGCCGCCACGAATTCCGCCCTGTGAACACGATTTAACAGCAGTCTGAAAATG 139710
||| || || || || | || ||| || || ||||| ||||| |||||| | ||||||||
Sbjct 153 AGTTGCCGCTCCACCTCTAACTCCTCCTTGAGAACAGGATTTTACAGCACTTTGAAAATG 212
Query 139711 TTTCCAAAAAGGAATAACACCAGTATGACGCACTTCACCTGTGCCAATCTTAGAACCTTC 139770
||| ||||||||||| |||||||||| |||| || | | ||| | |||| |
Sbjct 213 TTTATAAAAAGGAATACAACCAGTATGAAATGCTTCGCCATTTCTAATAGGACTACCTAC 272
Query 139771 GGCACGAATCATACCAACGTTAATACCAATTCCAGCGCGTTTGGAGATATATTCAACAAT 139830
|||||||| | ||| | |||||||||||||| || |||| || | ||||| |||||
Sbjct 273 TGCACGAATTTTTCCAGCATTAATACCAATTCCTGCTCGTTGAGAAACATATTTTACAAT 332
Query 139831 TGA---AGCAGAAGCCTTATTGATAGACTTCAGCGAATCACCTGCCTCAATAACAACACA 139887
|| || || ||| ||| ||||| | || |||| | ||||| | ||||||
Sbjct 333 AGAACTAGTAGTAGCGTTA---ATAGAATCTAGATTATCATCACATTCAATTAAAACACA 389
Query 139888 TGAACTAAACTGCCGAGTTGGAGTACGACAACCAGCCATAATAGGAGTTGGCAATGAAAT 139947
||| ||||| || ||||| ||||| | | |||| |||||| || || || || |||||
Sbjct 390 TGAGCTAAATTGTCGAGTAGGAGTTCTAACTCCAGACATAATTGGTGTCGGTAAAGAAAT 449
Query 139948 CTGTCGAGTAGATACTGCTTCATAAAAACG 139977
| ||| || | || | |||||||||
Sbjct 450 TTTGAAAGTTGAAATGGCATTATAAAAACG 479
>seq249645
Length=476466
Score = 113 bits (124), Expect = 5e-20
Identities = 271/406 (67%), Gaps = 8/406 (2%)
Strand=Plus/Minus
Query 139546 CTGGACGCCATAATCCATATGACGGATACGGTTTTCTTCTACGCCTTTGTTATTTTTCAA 139605
||| ||||| || ||||||||||||| |||||| ||||| || || ||||||||| |
Sbjct 264951 CTGTACGCCGTAGTCCATATGACGGACACGGTTGTCTTCAACACCGCGGTTATTTTTGAG 264892
Query 139606 AACGAGAAGATTTTCAACTTCCAAATGCCAAATAGGATAATAAGCAGTAGCAGCGCCGCC 139665
|| || | |||||||| |||||||| | || || | || ||||| |||||
Sbjct 264891 TACCAGTAATGACTCAACTTCTAAATGCCATAGTGGGTAGAACAACGTCGCAGCACCGCC 264832
Query 139666 ACGAATTCCGCCCTGTGAACACGATTTAACAGCAGTCTGAAAATGTTTCCAAAAAGGAAT 139725
||| | || || ||||| || ||||||| || || || || ||| ||||||||||
Sbjct 264831 ACGTACGCCACCTTGTGAGCAGCATTTAACGGCCGTTTGGAACAATTTATAAAAAGGAAT 264772
Query 139726 AACACCAGTATGACGCACTTCACCTGTGCCAATCTTAG---AACCTTCGGCACGAATCAT 139782
| |||||||| | ||||||| |||| ||| ||| |||||| ||
Sbjct 264771 ACAGCCAGTATGCTGTGCTTCACC---GCCACGGATAGGGCTACCAAGGGCACGGATACG 264715
Query 139783 ACCAACGTTAATACCAATTCCAGCGCGTTTGGAGATATATTCAACAATTGAAGCAGAAGC 139842
||| |||| || || || ||||| || | || | ||| || || | || |
Sbjct 264714 ACCTGCGTTGATGCCGATACCAGCACGCTGTGACACATAGCGTACGATGGCGCTAGTGGT 264655
Query 139843 CTTATTGATAGACT-TCAGCGAATCACCTGCCTCAATAACAACACATGAACTAAACTGCC 139901
|||||||| | | ||| |||||| || || | || || || |||||||| |
Sbjct 264654 GGCGTTGATAGAGTCTAAGC-TATCACCACATTCGATTAAGACGCACGAGCTAAACTGAC 264596
Query 139902 GAGTTGGAGTACGACAACCAGCCATAATAGGAGTTGGCAATGAAAT 139947
| | ||| ||||| ||| | ||| || || ||||| | ||| ||
Sbjct 264595 GCGATGGCGTACGCACACCTGACATGATTGGCGTTGGTAGTGAGAT 264550
>seq127984
Length=21361
Score = 93.3 bits (102), Expect = 4e-14
Identities = 72/86 (84%), Gaps = 0/86 (0%)
Strand=Plus/Minus
Query 69942 GTCATAAATTGGAGCGGATAATGAGAATCGAACTCACATCATCAGATTGGAAGTCTGAGG 70001
||||||||||||||||| | | ||||||||||||| ||||||||| ||||||| ||||||
Sbjct 19919 GTCATAAATTGGAGCGGGTGAAGAGAATCGAACTCTCATCATCAGCTTGGAAGGCTGAGG 19860
Query 70002 TAATGCCATTATACGATATCCGCAAA 70027
| | ||| || || | | |||||||
Sbjct 19859 TTTTACCACTAAACTACACCCGCAAA 19834
>seq252826
Length=193385
Score = 84.2 bits (92), Expect = 2e-11
Identities = 64/76 (84%), Gaps = 0/76 (0%)
Strand=Plus/Minus
Query 69119 TGGTGCTGATTGACGGAATCGAACCGCCGACCTTCTCATTACAAGTGAGTTGCTCTACCT 69178
|||||| || || ||| ||||||| | |||||| || ||||||||| ||||||||||||
Sbjct 192022 TGGTGCCGACTGCCGGGATCGAACTGGCGACCTACTGATTACAAGTCAGTTGCTCTACCA 191963
Query 69179 ACTGAGCTAAATCAGC 69194
|||||||||| || ||
Sbjct 191962 ACTGAGCTAAGTCGGC 191947
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 532413990374560
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |