Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Arabis_20nordmanniana_20[genbank_20GCA_5F001484925.1_202016-01-04]
267,228 sequences; 342,306,570 total letters
Query= NC_027352.1
Length=159492
Score E
Sequences producing significant alignments: (Bits) Value
seq158858 664 0.0
seq78791 277 2e-69
seq82942 105 7e-18
seq149378 91.5 1e-13
>seq158858
Length=235449
Score = 664 bits (736), Expect = 0.0
Identities = 796/1076 (74%), Gaps = 4/1076 (0%)
Strand=Plus/Minus
Query 39920 AGCTAACTTGTAGTTAACTCCTGCTTCCTGTACTTTTGTGATGACAAGAGATACAACTTC 39979
||| || ||||||||||| || ||||| | | | ||| |||| | ||| | ||||
Sbjct 172680 AGCAAATTTGTAGTTAACACCAGCTTCAGCTGCATGTGTAATGATGACAGACTCCACTTT 172621
Query 39980 AACTTGCTCTGCTGGGTCTCCGTCTTGGTCT-GTAGTCTCCGTTTTCACGTAGTCTCCGT 40038
| | | | ||| || | |||| ||| | | | | |||| || | ||||| |
Sbjct 172620 GATTCCTTTTAATGGCTCATCATCTTCATCTTGGAATTTTGCTTTT-ACAAATTCTCCAT 172562
Query 40039 CCACTGTCATCTTGTCTAACTCTTCCTCGATGTTCTCAGGGTTGAACGATAATGAGAAGT 40098
| || ||| || | | ||||| |||| || | ||||| || | |||||||
Sbjct 172561 CAACAAGCATTTTATGTGTTTCTTCAACGATATTTGCTGGGTTAAAACTCATAGAGAAGT 172502
Query 40099 AGTCTCCTCCACCCATGTATCCATCTAGTCGAACCTCTTCACTGAATAAGTTAATTTCTT 40158
| || || ||| ||| || ||| ||| ||| | ||||||||| | || || |
Sbjct 172501 AATCCCCACCATGCATATAACCACTAAGTTGAATCGTTTCACTGAACAGATTGATACTCT 172442
Query 40159 TACGTTTTAGGTCGAATACTTTACCTGTGTTCAGTGTAACTTTTACATCGTAACGTTGTG 40218
||| | ||| |||| |||||| | | || | ||||| || || || |||||||
Sbjct 172441 TACTTCTTAATTCGATAGATTTACCGTTATCAAGAATCACTTTAACGTCATATCGTTGTG 172382
Query 40219 AATCAGTTGCTAAGATGTTTAAGTCACCGATAGCAGAACGGAATGTGTACCCTTCATTTA 40278
|||| |||| |||||| ||||| ||||| ||||||||||||||||| || || |||||||
Sbjct 172381 AATCTGTTGTTAAGATATTTAAATCACCAATAGCAGAACGGAATGTATAACCCTCATTTA 172322
Query 40279 ACTCGAACGCAATGGCACGTAGTGAATCGTAGTTCAGTTTTACACGGTTTGCGAA-GCTA 40337
| || |||||||| ||||||| ||||| || | |||||||| ||||| || ||||
Sbjct 172321 ATTCAAACGCAATCGCACGTAAGCTGTCGTAATTTAACTTTACACGATTTGCAAATGCTA 172262
Query 40338 ACAACGTGCTTAATTTGGTTGTAGTACTTAGGATCAATCTTATCTCGTAAGTAGATTTCG 40397
|||| ||||| |||| | |||| | |||| || ||| || |||||||||
Sbjct 172261 -CAACATGCTTGATTTCACCATGATACTGTTCAGCAATTTTGTCTTTTAGGTAGATTTCA 172203
Query 40398 ATCTCAGAAGCCGTTGGGTAGTCGAAACGAATGTGGTAATGGAATCGACCAGGACGACTT 40457
|| |||| ||| ||||| || || || || || ||||||||||||||||||||||| |||
Sbjct 172202 ATTTCAGTAGCAGTTGGATAATCAAATCGGATATGGTAATGGAATCGACCAGGACGGCTT 172143
Query 40458 AACATGAACTCGTTCACTTTGTATAGGTCGTTAACTGTGATAGCATACATACGTTTCTTC 40517
||||| ||||| || || || | || ||||| || || || ||||| ||||||||||||
Sbjct 172142 AACATAAACTCATTTACCTTATTAAGATCGTTTACCGTAATCGCATAGATACGTTTCTTC 172083
Query 40518 TGAGATGTACCATCGAATAGTCCTAACAAGTTATCTTGCGACTCTGCTTTATCATTACGT 40577
||||| |||||||| |||| || | ||||| || || ||||||| ||||||||
Sbjct 172082 TGAGAAGTACCATCAAATAACCCCAGTAAGTTTTCCTGTTTTTCTGCTTCTTCATTACGA 172023
Query 40578 GGGTTGAACATTTTCTCAAACTCATCGAACACCACTAACACTTCTTGGTTAATCTCCTCA 40637
|| |||||||| || ||||||||||| || | | ||| ||||||||| ||| | |||
Sbjct 172022 GGATTGAACATCTTTTCAAACTCATCCAAGATAATTAATGCTTCTTGGTCAATTTGTTCA 171963
Query 40638 ATGAAGTCTGCAATTCCTGGGTACGCTTTTGTAACCATGATTACAGGGATACCACGAGCA 40697
||||| || ||||| |||||| | || ||||||||||| || || ||||| | |
Sbjct 171962 ATGAAATCAGCAATCCCTGGGAATGCCTTTGTAACCATAATAACCGGGATTTCCTTTTTA 171903
Query 40698 ACAACTGCTTCTGCAATCAACTGTACGAACATTGATTTACCCATACCTTTGTTACCACTT 40757
||||||||||||||||| | || || ||||| ||||||||||| ||||||||||||||
Sbjct 171902 ACAACTGCTTCTGCAATAAGTTGAACAAACATAGATTTACCCATTCCTTTGTTACCACTC 171843
Query 40758 AGGATAAGACCTAGACTGCGCTCAAACTTATCGTAGGATCGTAACACTTTCTCAATCTTC 40817
| ||||||||||| || || ||||| || || || ||| ||| ||||| | ||| ||
Sbjct 171842 AAGATAAGACCTAAGCTACGTTCAAATTTTTCATATGATTTTAATACTTTATTAATTTTT 171783
Query 40818 TCTGCGTGGCTACCATAAATCTTTTGTTCTTTAGATTCAAAGTTATCAATTTTTTCTAAA 40877
|||| ||| || |||||||||||| ||| | ||||||||||||||||| || ||||||
Sbjct 171782 TCTGGGTGACTTCCATAAATCTTTGCTTCCGTTGATTCAAAGTTATCAATCTTCTCTAAA 171723
Query 40878 GAGAATCCTTGCATCGGGTGGAAATCTACCTTGTATGTAGCAGCAGGTAATTGGTCATAA 40937
||||| ||| | || | ||| ||||| |||||||||||||| |||| || |||||||
Sbjct 171722 GAGAAACCTGATCTTGGATTGAATTCTACTTTGTATGTAGCAGCTGGTAGTTTGTCATAA 171663
Query 40938 GTTTTTAAGTCGTCTCCGTAGATTTTAAATGTGCTTCCAAAGTTTACGATTTTCAT 40993
||||||||||| || ||||| |||||| | || ||||| ||||| | ||||||||
Sbjct 171662 GTTTTTAAGTCATCACCGTAAATTTTATAAGTACTTCCGAAGTTAATAATTTTCAT 171607
Score = 140 bits (154), Expect = 3e-28
Identities = 429/648 (66%), Gaps = 44/648 (7%)
Strand=Plus/Minus
Query 37376 CTAAGTTTCTTTAGTGAGAGATGGACATTACCTTCGTAGTCTGCTTGGCAAGTGTCTTGG 37435
|||| || ||| || || ||||| ||||| |||||||||||| ||| ||||||||
Sbjct 194468 CTAATTTCCTTAAG-GATAGATGAACATTCTTCTCGTAGTCTGCTATGCATGTGTCTTGA 194410
Query 37436 TAGAAGTAATCAATCTCCCCGTTCTCTAACATACGTAGGATAAACGGTGAAATGTTGTTA 37495
|| ||||| |||| ||| || | ||||||||| ||| ||| | || || | |||
Sbjct 194409 TAAAAGTAGTCAAGCTCACCATACTCTAACATGTGTAAAATACTCATTGGGATATCATTA 194350
Query 37496 GAATCTCCACTATAGTAGATAGTCTTAT-------CTTTATA-----TGTAATCAAGTAG 37543
||||||||||||||||| || || |||| | ||| | |||| | ||
Sbjct 194349 GAATCTCCACTATAGTAAATCGTATTATTGCGACCATCAATACAGATTTTAATAATATAT 194290
Query 37544 CCGTAGCATAGAAGTTCAGGTACATGTCGGTTAGGTACTACTTGGAATTTTAAGTGTAAC 37603
||| |||| | | |||| ||||| ||||| || | | || ||| |||| |||
Sbjct 194289 CCGAAGCAAGGTAATTCATCTACAT---GGTTA-ACACAAATAGG--TTTGAAGTTTAA- 194237
Query 37604 CCGTCTTTATGGAATC--CAGGTGGATATTCATTAGAATTATC--GAACTGGATAAGTCT 37659
||| |||| || | || || | || | || | |||||| | |||
Sbjct 194236 -------TATAAAATCATCATGATGACATCC--TACACTTCCCCAGAACTGTACTAGTTC 194186
Query 37660 ATAACACTCTCGTTCTACTCCCATACCTTGTAACACTTTACTAATCTTCATATCATATGG 37719
||| | || |||||| ||||| || ||| || | |||||| | ||| |||||
Sbjct 194185 ATATGTATTTCTTTCTACACCCATCGTTTTTAAGTGTTCAGCAATCTTTAAATCGTATGG 194126
Query 37720 AGCGTATACAGTTA-AGTTAGGTACTTTAACTTGTCCCATACAGAAGTAACTGTAGAAGA 37778
||| || || |||| | || | | | ||||||| |||||| | | || | ||||| |
Sbjct 194125 AGCATACACGGTTATACTTGGTTCCATTAACTT-TCCCATTGAATAATACCCATAGAAAA 194067
Query 37779 TTAAATCTCCTAACGATCCTACGTGGTCAGGGTGTGTATGAGTCATTAATAC---TACGA 37835
||||||| |||| || ||||| |||||||| ||| |||||| | || ||| |||
Sbjct 194066 TTAAATCGCCTAGTGAACCTACATGGTCAGGATGTAAATGAGTGAGTAGTACAGTTAC-- 194009
Query 37836 TGTCTTCTACGCCCTCTAG-CAGGTCGCTACGCATGATTCTATCGAAGTTGGCACTACCA 37894
| |||| || | ||||| | | | | | || | | |||| | | ||||||
Sbjct 194008 TTGCTTC-ACTTCATCTAGTAATTTAGATTC-AATTAAGCGGCCGAATGTTGAACTACCG 193951
Query 37895 CAGTCAATCATGAATAGAATACCGTCCTCCTTGATGTACGCACTGTTATTGCCTAATCTT 37954
|| ||||| | || | | | | |||| || || || || | ||| || ||| | ||
Sbjct 193950 CAATCAATTAAAAACAAATGATCATCCTTTTTAATATAAGCGCAGTTGTTTCCTTCTTTT 193891
Query 37955 GTGTTGAATGCACTACCACAACCGATGAATTTAAACA-TTGTGCTCCT 38001
||||| ||||||||||| | || || || |||| || |||| |||||
Sbjct 193890 GTGTTAAATGCACTACCTCTTCCAATAAAATTAAGCATTTGTTCTCCT 193843
Score = 82.4 bits (90), Expect = 8e-11
Identities = 72/90 (80%), Gaps = 0/90 (0%)
Strand=Plus/Minus
Query 110677 CGAACATTACTGTATTAAACTGCTTATGTGGATGTTCTACAAATTCCACATCTGAACTTG 110736
|||||||||||||||| || | |||| |||||| ||||||||||| || ||||| ||
Sbjct 201789 CGAACATTACTGTATTGAATTTCTTAAGTGGATACTCTACAAATTCAACTTCTGAGCTAC 201730
Query 110737 AGCGACCGACATAAATCTCTTTAACTGTTA 110766
| ||| ||||| |||||||| || ||||
Sbjct 201729 TTCTACCCACATATATCTCTTTTACCGTTA 201700
>seq78791
Length=51567
Score = 277 bits (306), Expect = 2e-69
Identities = 338/461 (73%), Gaps = 0/461 (0%)
Strand=Plus/Plus
Query 7648 GTACACGGTGGTCACAACAGTATTGTGCAAGGAGCTAACTACGGAAACCGAAAAGAGCAC 7707
|||||||| ||||||||| ||||| ||||| ||||||| || || |||||||||||
Sbjct 38739 GTACACGGAGGTCACAACTCAATTGTCCAAGGTGCTAACTCTGGGGACAGAAAAGAGCAC 38798
Query 7708 GTTATGGATCGTCAAGTGAAGGACGCTCTAATCAGTAAGCTACGTAGTCTTGGTCACACA 7767
|| |||||| | | |||||||||||||||||| || || || | | | ||||||||
Sbjct 38799 GTAATGGATAGACGAGTGAAGGACGCTCTAATTAGCAAACTGAGAGCTTTAGGTCACACT 38858
Query 7768 GTATACGACTGCACAGATGAGACAGGTTCTACACAGTCTGCTAACTTACGTAACATCGTA 7827
||||||||| ||| || ||| || |||| ||| ||| |||||| |||||||||
Sbjct 38859 GTATACGACGACACTGACGAGGTTGGAACTACTCAGAATGCCAACTTAAACAACATCGTA 38918
Query 7828 GCTAAATGTAACGCTCATAACGTAGACTTAGACATCTCATTACACTTAAACGCATTCAAC 7887
||||| ||||| ||| |||||||||| || ||| | ||||| ||||| | |||
Sbjct 38919 GCTAAGTGTAATAGCCATGCAGTAGACTTAGTTATTTCAGTTCACTTGAACGCTTATAAC 38978
Query 7888 GGATCGGCTAATGGTGTTGAGGTTTGCTACTACGACCAACAAGCTCTAGCTGCTAAAGTG 7947
|| || || | || || |||||| ||||| ||| | |||| || ||| |||| |||
Sbjct 38979 GGTTCAGCACACGGAGTAGAGGTTCTTTACTATGACAAGCAAGAGCTTGCTTCTAAGGTG 39038
Query 7948 TCTAAGCAATTGTCTGACGACATCGGATGGTCTAACCGTGGAGCTAAACCTCGTACAGAC 8007
|| || || ||| | || || || |||| |||||| ||||| |||| || ||||||
Sbjct 39039 TCAGCTCAGTTATCTAAGGATATTGGCTGGTATAACCGAGGAGCAAAACAACGCACAGAC 39098
Query 8008 CTTTACGTTCTAAACAACACAAGAGCACCTGCTATCTTAATCGAATTAGGATTCATCGAC 8067
| || || | || | |||||| |||||||| | ||| | || ||||| |||
Sbjct 39099 TTAGCTGTATTAGCTAGAACTACAGCACCAGCTATCTTGCTTGAACTTGGCTTCATTGAC 39158
Query 8068 AACGATAGCGACATGGCTAAGTGGAACGTAGATAAAATCGC 8108
|| || ||||| |||||||| |||||||| || ||||| ||
Sbjct 39159 AATGAGAGCGATATGGCTAAATGGAACGTTGACAAAATTGC 39199
>seq82942
Length=47844
Score = 105 bits (116), Expect = 7e-18
Identities = 212/308 (69%), Gaps = 10/308 (3%)
Strand=Plus/Minus
Query 20207 AACTACATGCATGATATGAAGATTGCTCAATTCTATGCGGCCCAAAACCGTAGAGCGATG 20266
|||||| ||||||| | ||||| || ||| ||| ||||| | |||||| |||||||
Sbjct 35898 AACTACCTGCATGACTTAAAGATCGCCCAACGCTACGCGGCACTGAACCGTCAAGCGATG 35839
Query 20267 GTAGATGAAAT--TGTATCTCACATGGGATGGTTAATCACTGACCAATTCACAACGATCC 20324
|| | || || | || ||| |||| | || | |||||| ||||| |
Sbjct 35838 ACCGACGTCATCCTGGAAG-CA-ATGAACTGGTCAGCGACCAATCAATTCGATACGATTC 35781
Query 20325 ATAACTACATCGACATGGAGTACTCTGTACTACGTAAAGGTGCCGTATCTGCTCTAAAAG 20384
| ||||||||||| | ||| | | || ||||||||||| | || || | | |
Sbjct 35780 ACAACTACATCGATCTCGAGCAGATGATTCTGCGTAAAGGTGCGATTTCAGCGCAAGCCG 35721
Query 20385 GGGAA--CG-TATCATTGTACCAATCAACATGCGTGACGGTTCTCTAATTGCAGTAGGTA 20441
| ||| || ||||||| || || |||||||| |||||||| || || | ||| |
Sbjct 35720 GTGAAGTCGCTATCATT---CCGATGAACATGCGCGACGGTTCACTGATCGTCAAAGGAA 35664
Query 20442 AAGGTAACGCAGACTGGAACAACTCTGCACCACACGGAGCAGGACGACTTATGAGCCGTA 20501
|||| || | ||||||||| | || ||||||||||| |||||||| | ||| |||
Sbjct 35663 AAGGCAATCCGGACTGGAACTATTCGGCACCACACGGGGCAGGACGGATCATGTCCCGCT 35604
Query 20502 CAAAAGCC 20509
| ||||||
Sbjct 35603 CGAAAGCC 35596
>seq149378
Length=35185
Score = 91.5 bits (100), Expect = 1e-13
Identities = 143/203 (70%), Gaps = 4/203 (2%)
Strand=Plus/Minus
Query 142719 AACGTTCTACTGTTACAGAACCTTCGTACTTTAAGTAAACGTGTTCTTGTGGCATGATAG 142778
||||||| |||| ||| | ||| ||||||||| | |||||||| ||||||||||| |
Sbjct 32986 AACGTTCAACTGATACCGTACCCGTATACTTTAAGAATACGTGTTCATGTGGCATGATTG 32927
Query 142779 AACCGATTTGGTATACCCCAGTAGTACCAAAGCTACGCTCTGCTGAGATAGACTGAGCAC 142838
|||| | || || || || ||||| || || || | | | || |||||||
Sbjct 32926 AACCAAGTTCATACACACCTTGGGTACCGAATGAGCGGTCACCAGTTAATGATTGAGCAC 32867
Query 142839 GAGCAATCGGTACGTTTTTAATCATGAAGT--ATACTGTATTACCAGTTTGTACCGTTTG 142896
|| |||| | |||| |||||||||| | |||| | ||||| |||| ||||||||
Sbjct 32866 GACCAATAACTTCGTTCTTAATCATGATATAAATACGG--TTACCGGTTTCAACCGTTTG 32809
Query 142897 GTTAGTTACAGATGCCATGTAGT 142919
|| | | | |||||| ||||
Sbjct 32808 CTTTGCAAGTGTTGCCATATAGT 32786
Score = 82.4 bits (90), Expect = 8e-11
Identities = 152/221 (69%), Gaps = 4/221 (2%)
Strand=Plus/Minus
Query 149074 TCCATGATAGTAGAACCGTGTAAGTTGATTGCACCACGAGCAGATAAGAATTGGTTGATA 149133
||||| ||||| ||||| || || || || |||||| || |||||||| ||| ||
Sbjct 26429 TCCATAATAGTTGAACCATGCAACTTAATGTTACCACGTGCTGATAAGAAACGGTCAATG 26370
Query 149134 GTGAAACCAGTTGAGAATCCACCTTGGTTAGAC--GGTTGAATTACACGTTGACGGTCTA 149191
||||||||| | ||||| ||| ||| || | || | |||||| |||
Sbjct 26369 TCTAAACCAGTTTCCATACCACCA--GTTTGACCGGGAAGCATAATACGTTGTGCACCTA 26312
Query 149192 ATAGGTTGTTCGTAAACTCCGCTTGCACCCCAATCGGCATAAACGCATCTGTAGCTTTAC 149251
| | | ||| |||| || || | || ||||| |||||| | ||||| || || ||
Sbjct 26311 AGTGTTGGTTGATAAAGTCAGCCTTAACACCAATAGGCATATAAGCATCAGTTGCAACAC 26252
Query 149252 CGTAACCTTTACCTACGATTACAGCCGCTTTGTTAAGAACT 149292
|| |||||| ||| | | ||||| ||||||||||| |||
Sbjct 26251 CGAAACCTTCACCAATCTTAACAGCGGCTTTGTTAAGCACT 26211
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 508541998437760
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