Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Arabis_20nordmanniana_20[genbank_20GCA_5F001484925.1_202016-01-04] 267,228 sequences; 342,306,570 total letters Query= NC_027352.1 Length=159492 Score E Sequences producing significant alignments: (Bits) Value seq158858 664 0.0 seq78791 277 2e-69 seq82942 105 7e-18 seq149378 91.5 1e-13 >seq158858 Length=235449 Score = 664 bits (736), Expect = 0.0 Identities = 796/1076 (74%), Gaps = 4/1076 (0%) Strand=Plus/Minus Query 39920 AGCTAACTTGTAGTTAACTCCTGCTTCCTGTACTTTTGTGATGACAAGAGATACAACTTC 39979 ||| || ||||||||||| || ||||| | | | ||| |||| | ||| | |||| Sbjct 172680 AGCAAATTTGTAGTTAACACCAGCTTCAGCTGCATGTGTAATGATGACAGACTCCACTTT 172621 Query 39980 AACTTGCTCTGCTGGGTCTCCGTCTTGGTCT-GTAGTCTCCGTTTTCACGTAGTCTCCGT 40038 | | | | ||| || | |||| ||| | | | | |||| || | ||||| | Sbjct 172620 GATTCCTTTTAATGGCTCATCATCTTCATCTTGGAATTTTGCTTTT-ACAAATTCTCCAT 172562 Query 40039 CCACTGTCATCTTGTCTAACTCTTCCTCGATGTTCTCAGGGTTGAACGATAATGAGAAGT 40098 | || ||| || | | ||||| |||| || | ||||| || | ||||||| Sbjct 172561 CAACAAGCATTTTATGTGTTTCTTCAACGATATTTGCTGGGTTAAAACTCATAGAGAAGT 172502 Query 40099 AGTCTCCTCCACCCATGTATCCATCTAGTCGAACCTCTTCACTGAATAAGTTAATTTCTT 40158 | || || ||| ||| || ||| ||| ||| | ||||||||| | || || | Sbjct 172501 AATCCCCACCATGCATATAACCACTAAGTTGAATCGTTTCACTGAACAGATTGATACTCT 172442 Query 40159 TACGTTTTAGGTCGAATACTTTACCTGTGTTCAGTGTAACTTTTACATCGTAACGTTGTG 40218 ||| | ||| |||| |||||| | | || | ||||| || || || ||||||| Sbjct 172441 TACTTCTTAATTCGATAGATTTACCGTTATCAAGAATCACTTTAACGTCATATCGTTGTG 172382 Query 40219 AATCAGTTGCTAAGATGTTTAAGTCACCGATAGCAGAACGGAATGTGTACCCTTCATTTA 40278 |||| |||| |||||| ||||| ||||| ||||||||||||||||| || || ||||||| Sbjct 172381 AATCTGTTGTTAAGATATTTAAATCACCAATAGCAGAACGGAATGTATAACCCTCATTTA 172322 Query 40279 ACTCGAACGCAATGGCACGTAGTGAATCGTAGTTCAGTTTTACACGGTTTGCGAA-GCTA 40337 | || |||||||| ||||||| ||||| || | |||||||| ||||| || |||| Sbjct 172321 ATTCAAACGCAATCGCACGTAAGCTGTCGTAATTTAACTTTACACGATTTGCAAATGCTA 172262 Query 40338 ACAACGTGCTTAATTTGGTTGTAGTACTTAGGATCAATCTTATCTCGTAAGTAGATTTCG 40397 |||| ||||| |||| | |||| | |||| || ||| || ||||||||| Sbjct 172261 -CAACATGCTTGATTTCACCATGATACTGTTCAGCAATTTTGTCTTTTAGGTAGATTTCA 172203 Query 40398 ATCTCAGAAGCCGTTGGGTAGTCGAAACGAATGTGGTAATGGAATCGACCAGGACGACTT 40457 || |||| ||| ||||| || || || || || ||||||||||||||||||||||| ||| Sbjct 172202 ATTTCAGTAGCAGTTGGATAATCAAATCGGATATGGTAATGGAATCGACCAGGACGGCTT 172143 Query 40458 AACATGAACTCGTTCACTTTGTATAGGTCGTTAACTGTGATAGCATACATACGTTTCTTC 40517 ||||| ||||| || || || | || ||||| || || || ||||| |||||||||||| Sbjct 172142 AACATAAACTCATTTACCTTATTAAGATCGTTTACCGTAATCGCATAGATACGTTTCTTC 172083 Query 40518 TGAGATGTACCATCGAATAGTCCTAACAAGTTATCTTGCGACTCTGCTTTATCATTACGT 40577 ||||| |||||||| |||| || | ||||| || || ||||||| |||||||| Sbjct 172082 TGAGAAGTACCATCAAATAACCCCAGTAAGTTTTCCTGTTTTTCTGCTTCTTCATTACGA 172023 Query 40578 GGGTTGAACATTTTCTCAAACTCATCGAACACCACTAACACTTCTTGGTTAATCTCCTCA 40637 || |||||||| || ||||||||||| || | | ||| ||||||||| ||| | ||| Sbjct 172022 GGATTGAACATCTTTTCAAACTCATCCAAGATAATTAATGCTTCTTGGTCAATTTGTTCA 171963 Query 40638 ATGAAGTCTGCAATTCCTGGGTACGCTTTTGTAACCATGATTACAGGGATACCACGAGCA 40697 ||||| || ||||| |||||| | || ||||||||||| || || ||||| | | Sbjct 171962 ATGAAATCAGCAATCCCTGGGAATGCCTTTGTAACCATAATAACCGGGATTTCCTTTTTA 171903 Query 40698 ACAACTGCTTCTGCAATCAACTGTACGAACATTGATTTACCCATACCTTTGTTACCACTT 40757 ||||||||||||||||| | || || ||||| ||||||||||| |||||||||||||| Sbjct 171902 ACAACTGCTTCTGCAATAAGTTGAACAAACATAGATTTACCCATTCCTTTGTTACCACTC 171843 Query 40758 AGGATAAGACCTAGACTGCGCTCAAACTTATCGTAGGATCGTAACACTTTCTCAATCTTC 40817 | ||||||||||| || || ||||| || || || ||| ||| ||||| | ||| || Sbjct 171842 AAGATAAGACCTAAGCTACGTTCAAATTTTTCATATGATTTTAATACTTTATTAATTTTT 171783 Query 40818 TCTGCGTGGCTACCATAAATCTTTTGTTCTTTAGATTCAAAGTTATCAATTTTTTCTAAA 40877 |||| ||| || |||||||||||| ||| | ||||||||||||||||| || |||||| Sbjct 171782 TCTGGGTGACTTCCATAAATCTTTGCTTCCGTTGATTCAAAGTTATCAATCTTCTCTAAA 171723 Query 40878 GAGAATCCTTGCATCGGGTGGAAATCTACCTTGTATGTAGCAGCAGGTAATTGGTCATAA 40937 ||||| ||| | || | ||| ||||| |||||||||||||| |||| || ||||||| Sbjct 171722 GAGAAACCTGATCTTGGATTGAATTCTACTTTGTATGTAGCAGCTGGTAGTTTGTCATAA 171663 Query 40938 GTTTTTAAGTCGTCTCCGTAGATTTTAAATGTGCTTCCAAAGTTTACGATTTTCAT 40993 ||||||||||| || ||||| |||||| | || ||||| ||||| | |||||||| Sbjct 171662 GTTTTTAAGTCATCACCGTAAATTTTATAAGTACTTCCGAAGTTAATAATTTTCAT 171607 Score = 140 bits (154), Expect = 3e-28 Identities = 429/648 (66%), Gaps = 44/648 (7%) Strand=Plus/Minus Query 37376 CTAAGTTTCTTTAGTGAGAGATGGACATTACCTTCGTAGTCTGCTTGGCAAGTGTCTTGG 37435 |||| || ||| || || ||||| ||||| |||||||||||| ||| |||||||| Sbjct 194468 CTAATTTCCTTAAG-GATAGATGAACATTCTTCTCGTAGTCTGCTATGCATGTGTCTTGA 194410 Query 37436 TAGAAGTAATCAATCTCCCCGTTCTCTAACATACGTAGGATAAACGGTGAAATGTTGTTA 37495 || ||||| |||| ||| || | ||||||||| ||| ||| | || || | ||| Sbjct 194409 TAAAAGTAGTCAAGCTCACCATACTCTAACATGTGTAAAATACTCATTGGGATATCATTA 194350 Query 37496 GAATCTCCACTATAGTAGATAGTCTTAT-------CTTTATA-----TGTAATCAAGTAG 37543 ||||||||||||||||| || || |||| | ||| | |||| | || Sbjct 194349 GAATCTCCACTATAGTAAATCGTATTATTGCGACCATCAATACAGATTTTAATAATATAT 194290 Query 37544 CCGTAGCATAGAAGTTCAGGTACATGTCGGTTAGGTACTACTTGGAATTTTAAGTGTAAC 37603 ||| |||| | | |||| ||||| ||||| || | | || ||| |||| ||| Sbjct 194289 CCGAAGCAAGGTAATTCATCTACAT---GGTTA-ACACAAATAGG--TTTGAAGTTTAA- 194237 Query 37604 CCGTCTTTATGGAATC--CAGGTGGATATTCATTAGAATTATC--GAACTGGATAAGTCT 37659 ||| |||| || | || || | || | || | |||||| | ||| Sbjct 194236 -------TATAAAATCATCATGATGACATCC--TACACTTCCCCAGAACTGTACTAGTTC 194186 Query 37660 ATAACACTCTCGTTCTACTCCCATACCTTGTAACACTTTACTAATCTTCATATCATATGG 37719 ||| | || |||||| ||||| || ||| || | |||||| | ||| ||||| Sbjct 194185 ATATGTATTTCTTTCTACACCCATCGTTTTTAAGTGTTCAGCAATCTTTAAATCGTATGG 194126 Query 37720 AGCGTATACAGTTA-AGTTAGGTACTTTAACTTGTCCCATACAGAAGTAACTGTAGAAGA 37778 ||| || || |||| | || | | | ||||||| |||||| | | || | ||||| | Sbjct 194125 AGCATACACGGTTATACTTGGTTCCATTAACTT-TCCCATTGAATAATACCCATAGAAAA 194067 Query 37779 TTAAATCTCCTAACGATCCTACGTGGTCAGGGTGTGTATGAGTCATTAATAC---TACGA 37835 ||||||| |||| || ||||| |||||||| ||| |||||| | || ||| ||| Sbjct 194066 TTAAATCGCCTAGTGAACCTACATGGTCAGGATGTAAATGAGTGAGTAGTACAGTTAC-- 194009 Query 37836 TGTCTTCTACGCCCTCTAG-CAGGTCGCTACGCATGATTCTATCGAAGTTGGCACTACCA 37894 | |||| || | ||||| | | | | | || | | |||| | | |||||| Sbjct 194008 TTGCTTC-ACTTCATCTAGTAATTTAGATTC-AATTAAGCGGCCGAATGTTGAACTACCG 193951 Query 37895 CAGTCAATCATGAATAGAATACCGTCCTCCTTGATGTACGCACTGTTATTGCCTAATCTT 37954 || ||||| | || | | | | |||| || || || || | ||| || ||| | || Sbjct 193950 CAATCAATTAAAAACAAATGATCATCCTTTTTAATATAAGCGCAGTTGTTTCCTTCTTTT 193891 Query 37955 GTGTTGAATGCACTACCACAACCGATGAATTTAAACA-TTGTGCTCCT 38001 ||||| ||||||||||| | || || || |||| || |||| ||||| Sbjct 193890 GTGTTAAATGCACTACCTCTTCCAATAAAATTAAGCATTTGTTCTCCT 193843 Score = 82.4 bits (90), Expect = 8e-11 Identities = 72/90 (80%), Gaps = 0/90 (0%) Strand=Plus/Minus Query 110677 CGAACATTACTGTATTAAACTGCTTATGTGGATGTTCTACAAATTCCACATCTGAACTTG 110736 |||||||||||||||| || | |||| |||||| ||||||||||| || ||||| || Sbjct 201789 CGAACATTACTGTATTGAATTTCTTAAGTGGATACTCTACAAATTCAACTTCTGAGCTAC 201730 Query 110737 AGCGACCGACATAAATCTCTTTAACTGTTA 110766 | ||| ||||| |||||||| || |||| Sbjct 201729 TTCTACCCACATATATCTCTTTTACCGTTA 201700 >seq78791 Length=51567 Score = 277 bits (306), Expect = 2e-69 Identities = 338/461 (73%), Gaps = 0/461 (0%) Strand=Plus/Plus Query 7648 GTACACGGTGGTCACAACAGTATTGTGCAAGGAGCTAACTACGGAAACCGAAAAGAGCAC 7707 |||||||| ||||||||| ||||| ||||| ||||||| || || ||||||||||| Sbjct 38739 GTACACGGAGGTCACAACTCAATTGTCCAAGGTGCTAACTCTGGGGACAGAAAAGAGCAC 38798 Query 7708 GTTATGGATCGTCAAGTGAAGGACGCTCTAATCAGTAAGCTACGTAGTCTTGGTCACACA 7767 || |||||| | | |||||||||||||||||| || || || | | | |||||||| Sbjct 38799 GTAATGGATAGACGAGTGAAGGACGCTCTAATTAGCAAACTGAGAGCTTTAGGTCACACT 38858 Query 7768 GTATACGACTGCACAGATGAGACAGGTTCTACACAGTCTGCTAACTTACGTAACATCGTA 7827 ||||||||| ||| || ||| || |||| ||| ||| |||||| ||||||||| Sbjct 38859 GTATACGACGACACTGACGAGGTTGGAACTACTCAGAATGCCAACTTAAACAACATCGTA 38918 Query 7828 GCTAAATGTAACGCTCATAACGTAGACTTAGACATCTCATTACACTTAAACGCATTCAAC 7887 ||||| ||||| ||| |||||||||| || ||| | ||||| ||||| | ||| Sbjct 38919 GCTAAGTGTAATAGCCATGCAGTAGACTTAGTTATTTCAGTTCACTTGAACGCTTATAAC 38978 Query 7888 GGATCGGCTAATGGTGTTGAGGTTTGCTACTACGACCAACAAGCTCTAGCTGCTAAAGTG 7947 || || || | || || |||||| ||||| ||| | |||| || ||| |||| ||| Sbjct 38979 GGTTCAGCACACGGAGTAGAGGTTCTTTACTATGACAAGCAAGAGCTTGCTTCTAAGGTG 39038 Query 7948 TCTAAGCAATTGTCTGACGACATCGGATGGTCTAACCGTGGAGCTAAACCTCGTACAGAC 8007 || || || ||| | || || || |||| |||||| ||||| |||| || |||||| Sbjct 39039 TCAGCTCAGTTATCTAAGGATATTGGCTGGTATAACCGAGGAGCAAAACAACGCACAGAC 39098 Query 8008 CTTTACGTTCTAAACAACACAAGAGCACCTGCTATCTTAATCGAATTAGGATTCATCGAC 8067 | || || | || | |||||| |||||||| | ||| | || ||||| ||| Sbjct 39099 TTAGCTGTATTAGCTAGAACTACAGCACCAGCTATCTTGCTTGAACTTGGCTTCATTGAC 39158 Query 8068 AACGATAGCGACATGGCTAAGTGGAACGTAGATAAAATCGC 8108 || || ||||| |||||||| |||||||| || ||||| || Sbjct 39159 AATGAGAGCGATATGGCTAAATGGAACGTTGACAAAATTGC 39199 >seq82942 Length=47844 Score = 105 bits (116), Expect = 7e-18 Identities = 212/308 (69%), Gaps = 10/308 (3%) Strand=Plus/Minus Query 20207 AACTACATGCATGATATGAAGATTGCTCAATTCTATGCGGCCCAAAACCGTAGAGCGATG 20266 |||||| ||||||| | ||||| || ||| ||| ||||| | |||||| ||||||| Sbjct 35898 AACTACCTGCATGACTTAAAGATCGCCCAACGCTACGCGGCACTGAACCGTCAAGCGATG 35839 Query 20267 GTAGATGAAAT--TGTATCTCACATGGGATGGTTAATCACTGACCAATTCACAACGATCC 20324 || | || || | || ||| |||| | || | |||||| ||||| | Sbjct 35838 ACCGACGTCATCCTGGAAG-CA-ATGAACTGGTCAGCGACCAATCAATTCGATACGATTC 35781 Query 20325 ATAACTACATCGACATGGAGTACTCTGTACTACGTAAAGGTGCCGTATCTGCTCTAAAAG 20384 | ||||||||||| | ||| | | || ||||||||||| | || || | | | Sbjct 35780 ACAACTACATCGATCTCGAGCAGATGATTCTGCGTAAAGGTGCGATTTCAGCGCAAGCCG 35721 Query 20385 GGGAA--CG-TATCATTGTACCAATCAACATGCGTGACGGTTCTCTAATTGCAGTAGGTA 20441 | ||| || ||||||| || || |||||||| |||||||| || || | ||| | Sbjct 35720 GTGAAGTCGCTATCATT---CCGATGAACATGCGCGACGGTTCACTGATCGTCAAAGGAA 35664 Query 20442 AAGGTAACGCAGACTGGAACAACTCTGCACCACACGGAGCAGGACGACTTATGAGCCGTA 20501 |||| || | ||||||||| | || ||||||||||| |||||||| | ||| ||| Sbjct 35663 AAGGCAATCCGGACTGGAACTATTCGGCACCACACGGGGCAGGACGGATCATGTCCCGCT 35604 Query 20502 CAAAAGCC 20509 | |||||| Sbjct 35603 CGAAAGCC 35596 >seq149378 Length=35185 Score = 91.5 bits (100), Expect = 1e-13 Identities = 143/203 (70%), Gaps = 4/203 (2%) Strand=Plus/Minus Query 142719 AACGTTCTACTGTTACAGAACCTTCGTACTTTAAGTAAACGTGTTCTTGTGGCATGATAG 142778 ||||||| |||| ||| | ||| ||||||||| | |||||||| ||||||||||| | Sbjct 32986 AACGTTCAACTGATACCGTACCCGTATACTTTAAGAATACGTGTTCATGTGGCATGATTG 32927 Query 142779 AACCGATTTGGTATACCCCAGTAGTACCAAAGCTACGCTCTGCTGAGATAGACTGAGCAC 142838 |||| | || || || || ||||| || || || | | | || ||||||| Sbjct 32926 AACCAAGTTCATACACACCTTGGGTACCGAATGAGCGGTCACCAGTTAATGATTGAGCAC 32867 Query 142839 GAGCAATCGGTACGTTTTTAATCATGAAGT--ATACTGTATTACCAGTTTGTACCGTTTG 142896 || |||| | |||| |||||||||| | |||| | ||||| |||| |||||||| Sbjct 32866 GACCAATAACTTCGTTCTTAATCATGATATAAATACGG--TTACCGGTTTCAACCGTTTG 32809 Query 142897 GTTAGTTACAGATGCCATGTAGT 142919 || | | | |||||| |||| Sbjct 32808 CTTTGCAAGTGTTGCCATATAGT 32786 Score = 82.4 bits (90), Expect = 8e-11 Identities = 152/221 (69%), Gaps = 4/221 (2%) Strand=Plus/Minus Query 149074 TCCATGATAGTAGAACCGTGTAAGTTGATTGCACCACGAGCAGATAAGAATTGGTTGATA 149133 ||||| ||||| ||||| || || || || |||||| || |||||||| ||| || Sbjct 26429 TCCATAATAGTTGAACCATGCAACTTAATGTTACCACGTGCTGATAAGAAACGGTCAATG 26370 Query 149134 GTGAAACCAGTTGAGAATCCACCTTGGTTAGAC--GGTTGAATTACACGTTGACGGTCTA 149191 ||||||||| | ||||| ||| ||| || | || | |||||| ||| Sbjct 26369 TCTAAACCAGTTTCCATACCACCA--GTTTGACCGGGAAGCATAATACGTTGTGCACCTA 26312 Query 149192 ATAGGTTGTTCGTAAACTCCGCTTGCACCCCAATCGGCATAAACGCATCTGTAGCTTTAC 149251 | | | ||| |||| || || | || ||||| |||||| | ||||| || || || Sbjct 26311 AGTGTTGGTTGATAAAGTCAGCCTTAACACCAATAGGCATATAAGCATCAGTTGCAACAC 26252 Query 149252 CGTAACCTTTACCTACGATTACAGCCGCTTTGTTAAGAACT 149292 || |||||| ||| | | ||||| ||||||||||| ||| Sbjct 26251 CGAAACCTTCACCAATCTTAACAGCGGCTTTGTTAAGCACT 26211 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 508541998437760