Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Arabis_20nordmanniana_20[genbank_20GCA_5F001484925.1_202016-01-04] 267,228 sequences; 342,306,570 total letters Query= NC_027355.1 Length=159071 Score E Sequences producing significant alignments: (Bits) Value seq158858 700 0.0 seq82942 102 8e-17 seq149378 91.5 1e-13 >seq158858 Length=235449 Score = 700 bits (776), Expect = 0.0 Identities = 721/938 (77%), Gaps = 6/938 (1%) Strand=Plus/Minus Query 78004 TCTTCCTCGATGTTCTCAGGGTTGAA--TGATAATGAGAAGTAATCTCCTCCACCCATGT 78061 ||||| |||| || | ||||| || | ||| ||||||||||| || ||| ||| | Sbjct 172541 TCTTCAACGATATTTGCTGGGTTAAAACTCATA--GAGAAGTAATCCCCACCATGCATAT 172484 Query 78062 ACCCATCTAGACGAACCTCTTCACTGAACAGGTTGATTTCTTTACGTTTTAAGTCGAATA 78121 | ||| || ||| | |||||||||||| ||||| |||| | |||| |||| Sbjct 172483 AACCACTAAGTTGAATCGTTTCACTGAACAGATTGATACTCTTACTTCTTAATTCGATAG 172424 Query 78122 CTTTACCGTTACCTAGTGTAACTTTTACATCGTAACGTTGTGTATCAGTTGCTAAGATGT 78181 |||||||||| | || | ||||| || || || ||||||| ||| |||| |||||| | Sbjct 172423 ATTTACCGTTATCAAGAATCACTTTAACGTCATATCGTTGTGAATCTGTTGTTAAGATAT 172364 Query 78182 TTAAGTCACCGATAGCAGAACGGAATGTGTATCCTTCGTTTAACTCGAATGCGATAGCAC 78241 |||| ||||| ||||||||||||||||| || || || ||||| || || || || |||| Sbjct 172363 TTAAATCACCAATAGCAGAACGGAATGTATAACCCTCATTTAATTCAAACGCAATCGCAC 172304 Query 78242 GTAGTGAATCGTAGTTTAGTTTCACACGGTTTGCGAA-GCTAACAACATGTTTAATTTGG 78300 ||| ||||| |||| || ||||| ||||| || |||| ||||||| || |||| Sbjct 172303 GTAAGCTGTCGTAATTTAACTTTACACGATTTGCAAATGCTA-CAACATGCTTGATTTCA 172245 Query 78301 TTGTAATACTTAGGATCAATCTTGTCACGTAAGTAGATTTCGATTTCAGAAGCCGTTGGG 78360 | ||||| | |||| ||||| || ||||||||| ||||||| ||| ||||| Sbjct 172244 CCATGATACTGTTCAGCAATTTTGTCTTTTAGGTAGATTTCAATTTCAGTAGCAGTTGGA 172185 Query 78361 TAGTCGAAACGAATGTGGTAATGGAATCGACCAGGACGACTTAACATGAACTCATTCACT 78420 || || || || || ||||||||||||||||||||||| |||||||| |||||||| || Sbjct 172184 TAATCAAATCGGATATGGTAATGGAATCGACCAGGACGGCTTAACATAAACTCATTTACC 172125 Query 78421 TTATACAAGTCGTTCACTGTGATAGCATACATACGTTTCTTCTGAGATGTGCCATCGAAC 78480 |||| | ||||| || || || ||||| ||||||||||||||||| || ||||| || Sbjct 172124 TTATTAAGATCGTTTACCGTAATCGCATAGATACGTTTCTTCTGAGAAGTACCATCAAAT 172065 Query 78481 AATCCTAACAAGTTATCTTGTGATTCAGCTTTATCGTTACGTGGGTTGAACATCTTCTCA 78540 || || | ||||| || ||| ||| |||| || ||||| || ||||||||||| ||| Sbjct 172064 AACCCCAGTAAGTTTTCCTGTTTTTCTGCTTCTTCATTACGAGGATTGAACATCTTTTCA 172005 Query 78541 AACTCATCGAATACTACTAGTACTTCTTGGTTAATCTCTTCGATGAAGTCTGCAATACCT 78600 |||||||| || | | || | ||||||||| ||| | ||| ||||| || ||||| ||| Sbjct 172004 AACTCATCCAAGATAATTAATGCTTCTTGGTCAATTTGTTCAATGAAATCAGCAATCCCT 171945 Query 78601 GGATACGCTTTTGTAACCATGATTACAGGGATACCACGAGCAACAACTGCTTCTGCAATC 78660 || | || ||||||||||| || || ||||| | |||||||||||||||||| Sbjct 171944 GGGAATGCCTTTGTAACCATAATAACCGGGATTTCCTTTTTAACAACTGCTTCTGCAATA 171885 Query 78661 AACTGCACGAACATTGATTTACCCATACCTTTGTTACCACTTAGGATAAGTCCTAGGCTA 78720 | || || ||||| ||||||||||| |||||||||||||| | |||||| |||| |||| Sbjct 171884 AGTTGAACAAACATAGATTTACCCATTCCTTTGTTACCACTCAAGATAAGACCTAAGCTA 171825 Query 78721 CGCTCAAACTTATCGTAGGATCGTAACACTTTCTCAATCTTCTCTGCATGGCTACCATAA 78780 || ||||| || || || ||| ||| ||||| | ||| || |||| || || |||||| Sbjct 171824 CGTTCAAATTTTTCATATGATTTTAATACTTTATTAATTTTTTCTGGGTGACTTCCATAA 171765 Query 78781 ATCTTTTGTTCCTTAGATTCAAAGTTATCAATTTTTTCTAAAGAGAATCCTTGCATTGGG 78840 |||||| |||| | ||||||||||||||||| || ||||||||||| ||| |||| Sbjct 171764 ATCTTTGCTTCCGTTGATTCAAAGTTATCAATCTTCTCTAAAGAGAAACCTGATCTTGGA 171705 Query 78841 TGGAAATCTACCTTGTATGTAGCAGCAGGTAATTGGTCATAAGTTTTTAAGTCGTCTCCG 78900 | ||| ||||| |||||||||||||| |||| || |||||||||||||||||| || ||| Sbjct 171704 TTGAATTCTACTTTGTATGTAGCAGCTGGTAGTTTGTCATAAGTTTTTAAGTCATCACCG 171645 Query 78901 TAGATTTTAAATGTGCTTCCAAAGTTTACAATTTTCAT 78938 || |||||| | || ||||| ||||| | ||||||||| Sbjct 171644 TAAATTTTATAAGTACTTCCGAAGTTAATAATTTTCAT 171607 Score = 165 bits (182), Expect = 8e-36 Identities = 474/714 (66%), Gaps = 24/714 (3%) Strand=Plus/Minus Query 128535 TTCATTGATACCCATTAACATCTCGTTGATCTTGTTGTAATCAGGTTTCTCAGGCAGCTT 128594 || ||||||| |||||||||||| |||||||||| ||||||| ||| | || |||| Sbjct 233176 TTTATTGATATCCATTAACATCTTATTGATCTTGTCATAATCAGCTTTTGCCGGAAGCTC 233117 Query 128595 CGAGTTAGCGTGTGCAACTTCCAACTTCCCT-TCGTAATATGCGATGATATCTAGTGCTT 128653 || || | | || || | || ||| | ||||| | | | || |||| |||| Sbjct 233116 TGATTTCTCATAGGCTGCTGCTAA-TTCATTGTCGTACATTTCAACCATTTCTAAAGCTT 233058 Query 128654 GCTCTTTAGTATACTCACCGTTTCGGAACCCTAGAAGTGTTTCACGCTCAGGACGGTAGG 128713 || ||| || | ||| || || | ||| || ||| || | |||||| || | Sbjct 233057 CTTCGAAAGTGTATTTACCATTACGACAATCTAATAGAAGTTCTCGGTTAGGACGATACG 232998 Query 128714 TACTGTAGTCACTTGTGTCTAGGATTTCGATTGCAGAGATTAATAGTCTAGCACCCTGCA 128773 ||||||| | || ||| || | |||||| ||||| ||| || || || |||| Sbjct 232997 TACTGTAATTACCTGTCTCCAAGATTTCTGTTGCACTTGTTAGTAATCGGATACTGTGCA 232938 Query 128774 TGAAGTTCTTTGTATCGTAACCGAACTTCTCC-ACCAACTCCTGACGACCTGCTCCGTTC 128832 | ||| |||||||||||| || | | || | || || | | |||| |||||| Sbjct 232937 TAAAGAACTTTGTATCGTAGCC-ATGAGCACCGATTAAGTCACGTCTGCCTGTTCCGTT- 232880 Query 128833 TTAATT-TTGTTCGTCAG-----GGATC-GTG----TG--TAACCCCCAAACTTCGTGA- 128878 | | || || ||| | || |||| ||| || || || || || ||| | Sbjct 232879 TGAGTTCTTATTCTTTAGCTTTTGGATTTGTGAATTTGCATATCCACCGAA--TCGGTAC 232822 Query 128879 -TGATTTGTTTCGATAGGAATAGGTGTCGGTTATCGACTAAGACTTGTCCTAATTCAGTC 128937 | || | ||| |||| ||||| ||| |||||||||| ||||| |||||| | | ||| Sbjct 232821 TTAATGTTTTTTGATAAGAATAAGTGACGGTTATCGATTAAGATTTGTCCGAGTGGAGTA 232762 Query 128938 AAGATGATGAAATCTTCTTTTCTAGCAAACAGTACTTCAATGTTGTTCGGAACACCAAGC 128997 | ||||| |||| || | | |||| || | || ||||| || || || | || Sbjct 232761 ACCTTGATGTAATCCTCCGGACGAACAAATAGGATCTCGATGTTATTAGGTACGCTTTGC 232702 Query 128998 ATAGCATCCTTTACGAACTTACTGATATGTAGGATGTTGATGTCTACATCGTCCTTTGTA 129057 |||||||| | || ||||| | | ||| | |||||| | || ||||| ||||| || Sbjct 232701 ATAGCATCTCTAACAAACTTGTTCACATGAATGATGTTTACATCGACATCATCCTTCGTG 232642 Query 129058 TTCTTAAATGTCTTCCCACCTGTGTTATTGTACTCATTGAACGTTTCTAATCCGTAGAAG 129117 || | || | || ||||||| | ||||||||||| || | || || || || | Sbjct 232641 TTTCTGAAGTTTTTACCACCTGATGTGTTGTACTCATTAAATGAATCCAAACCTAAGTAA 232582 Query 129118 TATTCTTTCGGTGGGATACAAACTCCTTTGAAATCCCAATCTGAGTTCTCTGTGTCAGTT 129177 || || |||||||| || || || || | ||| |||||| | ||||| || ||| Sbjct 232581 TACTCAACTGGTGGGATGCATACACCCTTATAGTCCTTATCTGATGTATCTGTATCTGTT 232522 Query 129178 CCGTATAAACGGCTACC-GTATGGTACTAAGATGATTGTTCTCTCTTCCATCCA 129230 || || | ||||| ||| | || |||| ||||||||| ||||| | ||| Sbjct 232521 CCATAGGCATAACTACCTGTAGGAGAC-AAGAGGATTGTTCTATCTTCTAACCA 232469 Score = 113 bits (124), Expect = 5e-20 Identities = 479/744 (64%), Gaps = 57/744 (8%) Strand=Plus/Minus Query 74950 ACAACATTGAATCCTAACTCTTCTGCTT---GCTCACGATTAAACCCACCGTCTAAGTGC 75006 || ||||| |||||||| || | ||||| ||||| | ||| | ||||| ||| Sbjct 194568 ACTACATTAAATCCTAAGTCCTTTGCTTTTTGCTCA---TCGAACTTTTCATCTAAATGC 194512 Query 75007 ATACAGTAGACTCTATCACG--------GTTAGCCCAAACCATTTCACTAAGTTTCTTTA 75058 |||||| ||||| ||| | ||| | | | ||| |||| || ||| | Sbjct 194511 ATACAGAAGACTTTATGTCTTGCCTCTTGTTTGATCGACTCAT----CTAATTTCCTTAA 194456 Query 75059 GTGAGAGATGAACATTACCTTCATAGTTTGCTTGGCAAGTGTCTTGGTAGAAGTAATCAA 75118 | || ||||||||||| || |||| |||| ||| |||||||| || ||||| |||| Sbjct 194455 G-GATAGATGAACATTCTTCTCGTAGTCTGCTATGCATGTGTCTTGATAAAAGTAGTCAA 194397 Query 75119 TCTCTCCGTCCTCTAACATACGTAGGATAAACGGTGAAATGTTGTTAGAATCTCCACTGT 75178 ||| || | ||||||||| ||| ||| | || || | |||||||||||||| | Sbjct 194396 GCTCACCATACTCTAACATGTGTAAAATACTCATTGGGATATCATTAGAATCTCCACTAT 194337 Query 75179 AGTAGATAGTTTTAT-------CTTTATA-----TGTAATCAAGTAGCCGTAGCATAGAA 75226 |||| || || |||| | ||| | |||| | || ||| |||| | | Sbjct 194336 AGTAAATCGTATTATTGCGACCATCAATACAGATTTTAATAATATATCCGAAGCAAGGTA 194277 Query 75227 GTTCAGGCACATGTCGGTTA--GGTACTA--CTTGGAATTTGATATGGAATCCGTCTTTG 75282 |||| |||| ||||| | || ||| | ||| |||| ||| | || | Sbjct 194276 ATTCATCTACAT---GGTTAACACAAATAGGTTTGAAGTTTAATATAAAAT-CATCATGA 194221 Query 75283 TGGAATCCAGGTGGGTACTCGTTAGAATTATCGAACTGGATAAGTCTATAGCACTCTCGT 75342 || |||| ||| | | | |||||| | ||| ||| | || | Sbjct 194220 TGACATCC-------TACACTTCCCCA-----GAACTGTACTAGTTCATATGTATTTCTT 194173 Query 75343 TCTACTCCCATACCTTGTAACACTTTACTAATCTTCATATCATATGGAGCGTATACAGTT 75402 ||||| ||||| || ||| || | |||||| | ||| |||||||| || || ||| Sbjct 194172 TCTACACCCATCGTTTTTAAGTGTTCAGCAATCTTTAAATCGTATGGAGCATACACGGTT 194113 Query 75403 A-AGTTAGGAACTTTAACTTGTCCCATACAGAAGTAACTGTAGAAGATTAAATCCCCTAA 75461 | | || | | ||||||| |||||| | | || | ||||| |||||||| |||| Sbjct 194112 ATACTTGGTTCCATTAACTT-TCCCATTGAATAATACCCATAGAAAATTAAATCGCCTAG 194054 Query 75462 CGATCCTACGTGGTCAGGGTGTGTATGAGTCATTAGTACTACTA-TCTCTTCTACGCCCT 75520 || ||||| |||||||| ||| |||||| | |||||| || | |||| || | | Sbjct 194053 TGAACCTACATGGTCAGGATGTAAATGAGTGAGTAGTACAGTTACTTGCTTC-ACTTCAT 193995 Query 75521 CTAG-CAGGTCGCTACGCATGATTCTATCGAAGTTGGCACTACCACAGTCAATCATGAAT 75579 |||| | | | | | || | | |||| | | |||||| || ||||| | || Sbjct 193994 CTAGTAATTTAGATTC-AATTAAGCGGCCGAATGTTGAACTACCGCAATCAATTAAAAAC 193936 Query 75580 AGAACCTTGTCCTCCTTGATATACGCACTGTTATTGCCTAATCTTGTGTTGAATGCACTA 75639 | | | |||| || ||||| || | ||| || ||| | ||||||| ||||||||| Sbjct 193935 AAATGATCATCCTTTTTAATATAAGCGCAGTTGTTTCCTTCTTTTGTGTTAAATGCACTA 193876 Query 75640 CCACAACCGATGAATTTAAACATT 75663 || | || || || |||| |||| Sbjct 193875 CCTCTTCCAATAAAATTAAGCATT 193852 Score = 100 bits (110), Expect = 3e-16 Identities = 76/90 (84%), Gaps = 0/90 (0%) Strand=Plus/Minus Query 34777 ATGGAGGAGGGCAGGAGACTCGAACTCCTATCGGTTTTACCCTACGTCTGCTTTCAAGGC 34836 |||| |||||| | ||||||||| || ||||||||||||||||||| | ||||||| | Sbjct 161439 ATGGCGGAGGGTGAGGGACTCGAACCCCCATCGGTTTTACCCTACGTCAGTTTTCAAGAC 161380 Query 34837 AGGTCTCTTACCAGTTAGAGTAGCCCTCCA 34866 | |||||||||| |||||||| ||||||| Sbjct 161379 TGATCTCTTACCAATTAGAGTAACCCTCCA 161350 Score = 84.2 bits (92), Expect = 2e-11 Identities = 84/109 (77%), Gaps = 0/109 (0%) Strand=Plus/Minus Query 147960 CGAACATTACTGTATTAAATTTCTTACCTGGGTGCTCTACAAATTCCACTTCAGAACTTG 148019 |||||||||||||||| ||||||||| ||| | |||||||||||| ||||| || || Sbjct 201789 CGAACATTACTGTATTGAATTTCTTAAGTGGATACTCTACAAATTCAACTTCTGAGCTAC 201730 Query 148020 AGCGACCAACGTAAATCTCTTTAACTGTTAAAATATCACCTTCGTTAAA 148068 | ||| || || |||||||| || |||| | | ||||| ||||| Sbjct 201729 TTCTACCCACATATATCTCTTTTACCGTTAGGACTTGTCCTTCTTTAAA 201681 >seq82942 Length=47844 Score = 102 bits (112), Expect = 8e-17 Identities = 146/203 (72%), Gaps = 6/203 (3%) Strand=Plus/Minus Query 57802 CAATTCACAACGATCCATAACTACATCGACATGGAGTACTCTGTACTACGTAAAGGTGCC 57861 |||||| ||||| || ||||||||||| | ||| | | || ||||||||||| Sbjct 35796 CAATTCGATACGATTCACAACTACATCGATCTCGAGCAGATGATTCTGCGTAAAGGTGCG 35737 Query 57862 GTATCTGCTCTAAAAGGAGAA--CGC-ATCATTGTACCAATCAACATGCGTGACGGTTCT 57918 | || || | | || ||| ||| |||||| || || |||||||| |||||||| Sbjct 35736 ATTTCAGCGCAAGCCGGTGAAGTCGCTATCATT---CCGATGAACATGCGCGACGGTTCA 35680 Query 57919 CTTATCGCAATAGGTAAAGGGAACGCAGACTGGAACAACTCTGCACCACACGGAGCAGGA 57978 || |||| | ||| ||||| || | ||||||||| | || ||||||||||| |||||| Sbjct 35679 CTGATCGTCAAAGGAAAAGGCAATCCGGACTGGAACTATTCGGCACCACACGGGGCAGGA 35620 Query 57979 CGACTTATGAGCCGTACAAAAGC 58001 || | ||| ||| | ||||| Sbjct 35619 CGGATCATGTCCCGCTCGAAAGC 35597 >seq149378 Length=35185 Score = 91.5 bits (100), Expect = 1e-13 Identities = 143/203 (70%), Gaps = 4/203 (2%) Strand=Plus/Minus Query 20141 AACGTTCTACTGTTACAGAACCTTCGTACTTTAAGTAAACGTGTTCTTGTGGCATGATAG 20200 ||||||| |||| ||| | ||| ||||||||| | |||||||| ||||||||||| | Sbjct 32986 AACGTTCAACTGATACCGTACCCGTATACTTTAAGAATACGTGTTCATGTGGCATGATTG 32927 Query 20201 AACCGATTTGGTATACCCCAGTAGTACCAAAGCTACGCTCTGCTGAGATAGACTGAGCAC 20260 |||| | || || || || ||||| || || || | | | || ||||||| Sbjct 32926 AACCAAGTTCATACACACCTTGGGTACCGAATGAGCGGTCACCAGTTAATGATTGAGCAC 32867 Query 20261 GAGCAATCGGTACGTTTTTAATCATGAAGT--ATACTGTATTACCAGTTTGTACCGTTTG 20318 || |||| | |||| |||||||||| | |||| | ||||| |||| |||||||| Sbjct 32866 GACCAATAACTTCGTTCTTAATCATGATATAAATACGG--TTACCGGTTTCAACCGTTTG 32809 Query 20319 GTTAGTTACAGATGCCATGTAGT 20341 || | | | |||||| |||| Sbjct 32808 CTTTGCAAGTGTTGCCATATAGT 32786 Score = 82.4 bits (90), Expect = 8e-11 Identities = 152/221 (69%), Gaps = 4/221 (2%) Strand=Plus/Minus Query 26496 TCCATGATAGTAGAACCGTGTAAGTTGATTGCACCACGAGCAGATAAGAATTGGTTGATA 26555 ||||| ||||| ||||| || || || || |||||| || |||||||| ||| || Sbjct 26429 TCCATAATAGTTGAACCATGCAACTTAATGTTACCACGTGCTGATAAGAAACGGTCAATG 26370 Query 26556 GTGAAACCAGTTGAGAATCCACCTTGGTTAGAC--GGTTGAATTACACGTTGACGGTCTA 26613 ||||||||| | ||||| ||| ||| || | || | |||||| ||| Sbjct 26369 TCTAAACCAGTTTCCATACCACCA--GTTTGACCGGGAAGCATAATACGTTGTGCACCTA 26312 Query 26614 ATAGGTTGTTCGTGAACTCAGCTTGCACCCCAATTGGCATAAACGCATCTGTAGCTTTAC 26673 | | | ||| | || ||||| | || ||||| |||||| | ||||| || || || Sbjct 26311 AGTGTTGGTTGATAAAGTCAGCCTTAACACCAATAGGCATATAAGCATCAGTTGCAACAC 26252 Query 26674 CGTAACCTTTACCTACGATTACAGCCGCTTTGTTAAGAACT 26714 || |||||| ||| | | ||||| ||||||||||| ||| Sbjct 26251 CGAAACCTTCACCAATCTTAACAGCGGCTTTGTTAAGCACT 26211 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 507199298557280