Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Arabis_20nordmanniana_20[genbank_20GCA_5F001484925.1_202016-01-04] 267,228 sequences; 342,306,570 total letters Query= NC_027364.1 Length=348113 Score E Sequences producing significant alignments: (Bits) Value seq56932 138 3e-27 seq214244 118 2e-21 seq249645 93.3 9e-14 seq213831 91.5 3e-13 seq117240 84.2 5e-11 seq81543 84.2 5e-11 >seq56932 Length=160465 Score = 138 bits (152), Expect = 3e-27 Identities = 259/377 (69%), Gaps = 4/377 (1%) Strand=Plus/Minus Query 331930 ACTCAACATTATGGAATTTTTCATACGTTGGTTTCAAACCATTAACAATTGCACGAGTTT 331989 |||||||||| || |||| |||||| ||||| | ||| | ||| | | | | Sbjct 88454 ACTCAACATTGTGAAATTCTTCATAACGCGGTTTGAGACCTCGCAAAATGTCGATACTGT 88395 Query 331990 CATCAATTGTCGGCTCAACTACGTCAATTTTCATAAAACGACGAGTTAATGCACTATCTT 332049 |||||| | || || || |||||||| |||||||| | |||||| ||||| Sbjct 88394 CATCAACACTTGGTTCTTTCACATCAATTTTTTGGAAACGACGTGACAATGCATGATCTT 88335 Query 332050 TCTCGATATTTTTACGATATTCATCATATGTTGTTGCACCAATTACACGAATCTCACCAC 332109 | || | || ||||||||| | | ||||||| |||||| ||| | ||||||| Sbjct 88334 TTTCAAACACTTGACGATATTCGGTAAAGGTTGTTGAACCAATACAACGCAGCTCACCAT 88275 Query 332110 GTGAAAGTGCTGGCTTAAGCATATTGCTCATGTCCATAGAACCATTACTTGCGGAACCAG 332169 || ||||||||| || | || ||| || |||||| || | ||| || || | Sbjct 88274 TTGCAAGTGCTGGTTTGATCAGATTTGACACATCCATATTACTGCTCATTGACGACCCTG 88215 Query 332170 CCCCAACCATAATATGAATTTCATCAATGAAAACAATAGTATTTTCACGTTTCTTTAGTT 332229 | |||| || ||||| || ||||||||||| | || | |||| |||||| ||| Sbjct 88214 CGCCAATAATCATATGGATCTCATCAATGAACAAGATGGCATTTGGTTTTTTCTTAAGTG 88155 Query 332230 CTTTTAGCAA--ATTGTCGATGCGTTCTTCAAATTCACCACGATACTTAGTACCAGCAGT 332287 | | |||| ||| || || |||| |||||| ||||||||||| ||||||||||| | Sbjct 88154 CATCAAGCAGCGATT-TC-ATACGTTTTTCAAAATCACCACGATATTTAGTACCAGCGAT 88097 Query 332288 CAATGCACCAACATTTA 332304 || | ||||| || || Sbjct 88096 TAAAGAACCAATATCTA 88080 >seq214244 Length=1107 Score = 118 bits (130), Expect = 2e-21 Identities = 205/296 (69%), Gaps = 4/296 (1%) Strand=Plus/Plus Query 6078 TAATTCAGGTAATTCACGAGGTTTTCTCTGTAGTTGTTCTTTTACTTGTTCAACGTGGTT 6137 ||||| ||||| || ||| ||| ||| ||||| |||| || ||||| ||| || Sbjct 80 TAATTTAGGTAGTTTTTTAGGAGATCTTAGTACTTGTTTTTTTGCTAATTCAATGTGATT 139 Query 6138 TTTATAAATGTGGCAATCACCACCATTCCAAATAAATTCACCAACATCTAAACCCGTAAT 6197 ||||| | ||| |||||| || |||| | |||||| ||||| |||||| | Sbjct 140 ATTATATAGATGGACATCACCTCCTGTCCATAAAAATTCTCCAACTTCTAAATCACATTG 199 Query 6198 TTGTGCAATCATATGAGTTAGTAGTGAATAACTACTGATATTAAATGGAACTCCCAAAAA 6257 |||||| ||||||||| | |||| || ||||||| |||||||| || | ||| | ||| Sbjct 200 TTGTGCTATCATATGAATAAGTATTGCATAACTAGCTATATTAAAAGGTAATCCAAGAAA 259 Query 6258 TAGATCAGCGGATCTTTGATGTAGAATGCAGCTTAGTTTCCCTTGT--ACTACACAAAAT 6315 || |||| || | ||| | || || |||| ||| |||| | ||| |||| Sbjct 260 TACATCACAAGAACGTTGGTAAAGTTGACAACTTAATTTT--TTGTTAAAAACATAAAAC 317 Query 6316 TGTACAAAGCTATGACAAGGTGGCAACGTCATATCATCAAGCTCACCAACGTTCCA 6371 || | || ||||||||||||| || |||| | | || || ||||| ||||| Sbjct 318 TGAAATAATATATGACAAGGTGGTAATTTCATTTTGTTAATTTCTCCAACATTCCA 373 >seq249645 Length=476466 Score = 93.3 bits (102), Expect = 9e-14 Identities = 123/169 (73%), Gaps = 4/169 (2%) Strand=Plus/Minus Query 260008 TACAAAGTTTTGTTTACTTGGAAACAATAGTCCAGTTGACGCACACGGTTAAACTCAGTA 260067 |||| |||||||||| || | | ||||||| ||||| |||||||| ||| | Sbjct 264968 TACATCGTTTTGTTTAACTGTACGCCGTAGTCCATATGACGGACACGGTTGTCTTCAACA 264909 Query 260068 CCTTTGTTATTTTTAAGGACTACCAAGTTATCAAATTCCAAATGCCACAATGGGAAGTGA 260127 || ||||||||| || || | || |||| ||| |||||||| | |||| || | Sbjct 264908 CCGCGGTTATTTTTGAGTACCAGTAATGACTCAACTTCTAAATGCCATAGTGGGTAG--A 264851 Query 260128 ACA--GTTGCTGCACCACCACGAACACCACCTTGTGAACAGCTTTTAAC 260174 ||| || || ||||| ||||| || ||||||||||| |||| |||||| Sbjct 264850 ACAACGTCGCAGCACCGCCACGTACGCCACCTTGTGAGCAGCATTTAAC 264802 >seq213831 Length=112690 Score = 91.5 bits (100), Expect = 3e-13 Identities = 100/129 (78%), Gaps = 3/129 (2%) Strand=Plus/Minus Query 210919 TTTGGCGGTGAAGGTGAGATTTGAACTCACGGAGGACTTTCG-CCCTCGACGGTTTTCAA 210977 |||||||| || || |||||| |||||| || ||| || | |||| | |||||||||| Sbjct 15508 TTTGGCGGAGACGGAGAGATTCGAACTCTCGAAGGGCTATGAACCCTTGCCGGTTTTCAA 15449 Query 210978 GACCGTTGCATTAAACCGCTCTGCCACTTCACCAGTACT-AATAATTATAT-CACATCTT 211035 ||||| |||||| |||||||||||||| || ||| | | || ||||||| || ||| | Sbjct 15448 GACCGGTGCATTCAACCGCTCTGCCACGTCTCCATTGGTGCATCATTATATACAGATCAT 15389 Query 211036 TATGTGATG 211044 | | | ||| Sbjct 15388 TTTATAATG 15380 >seq117240 Length=334284 Score = 84.2 bits (92), Expect = 5e-11 Identities = 72/89 (81%), Gaps = 0/89 (0%) Strand=Plus/Minus Query 209109 TGGCAGTGAGTGTGGGATTCGAACCCACGATACGCTTTCGCATATGCTACCTTAGCAGGG 209168 |||| |||| | ||||||||||||| |||||||||| | | |||| | ||||||||||| Sbjct 318782 TGGCGGTGAAGGAGGGATTCGAACCCTCGATACGCTTACACGTATGGTTCCTTAGCAGGG 318723 Query 209169 TAGTGATTTCAACCACTCATCCAACTCAC 209197 | || ||||| ||||||| ||| |||| Sbjct 318722 AACTGGTTTCAGCCACTCACCCACTTCAC 318694 >seq81543 Length=132751 Score = 84.2 bits (92), Expect = 5e-11 Identities = 115/161 (71%), Gaps = 0/161 (0%) Strand=Plus/Plus Query 6121 ACTTGTTCAACGTGGTTTTTATAAATGTGGCAATCACCACCATTCCAAATAAATTCACCA 6180 |||||||| |||||||| |||||| ||||||||||| || |||| ||||| |||||| Sbjct 70590 ACTTGTTCGCGGTGGTTTTGATAAATATGGCAATCACCGCCTGTCCAGATAAACTCACCA 70649 Query 6181 ACATCTAAACCCGTAATTTGTGCAATCATATGAGTTAGTAGTGAATAACTACTGATATTA 6240 || || || || || ||||| | ||| || || | || | || || ||||| Sbjct 70650 ACGTCCAATCCGCAAACCTGTGCGACCATGTGGGTCAAGAGCGCGTAGCTTGCAATATTG 70709 Query 6241 AATGGAACTCCCAAAAATAGATCAGCGGATCTTTGATGTAG 6281 ||||| || || | |||| ||| || || | |||| ||| Sbjct 70710 AATGGCACACCTAGGAATAAATCCGCTGAGCGCTGATATAG 70750 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1110016802038944