Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Arabis_20nordmanniana_20[genbank_20GCA_5F001484925.1_202016-01-04]
267,228 sequences; 342,306,570 total letters
Query= NC_027364.1
Length=348113
Score E
Sequences producing significant alignments: (Bits) Value
seq56932 138 3e-27
seq214244 118 2e-21
seq249645 93.3 9e-14
seq213831 91.5 3e-13
seq117240 84.2 5e-11
seq81543 84.2 5e-11
>seq56932
Length=160465
Score = 138 bits (152), Expect = 3e-27
Identities = 259/377 (69%), Gaps = 4/377 (1%)
Strand=Plus/Minus
Query 331930 ACTCAACATTATGGAATTTTTCATACGTTGGTTTCAAACCATTAACAATTGCACGAGTTT 331989
|||||||||| || |||| |||||| ||||| | ||| | ||| | | | |
Sbjct 88454 ACTCAACATTGTGAAATTCTTCATAACGCGGTTTGAGACCTCGCAAAATGTCGATACTGT 88395
Query 331990 CATCAATTGTCGGCTCAACTACGTCAATTTTCATAAAACGACGAGTTAATGCACTATCTT 332049
|||||| | || || || |||||||| |||||||| | |||||| |||||
Sbjct 88394 CATCAACACTTGGTTCTTTCACATCAATTTTTTGGAAACGACGTGACAATGCATGATCTT 88335
Query 332050 TCTCGATATTTTTACGATATTCATCATATGTTGTTGCACCAATTACACGAATCTCACCAC 332109
| || | || ||||||||| | | ||||||| |||||| ||| | |||||||
Sbjct 88334 TTTCAAACACTTGACGATATTCGGTAAAGGTTGTTGAACCAATACAACGCAGCTCACCAT 88275
Query 332110 GTGAAAGTGCTGGCTTAAGCATATTGCTCATGTCCATAGAACCATTACTTGCGGAACCAG 332169
|| ||||||||| || | || ||| || |||||| || | ||| || || |
Sbjct 88274 TTGCAAGTGCTGGTTTGATCAGATTTGACACATCCATATTACTGCTCATTGACGACCCTG 88215
Query 332170 CCCCAACCATAATATGAATTTCATCAATGAAAACAATAGTATTTTCACGTTTCTTTAGTT 332229
| |||| || ||||| || ||||||||||| | || | |||| |||||| |||
Sbjct 88214 CGCCAATAATCATATGGATCTCATCAATGAACAAGATGGCATTTGGTTTTTTCTTAAGTG 88155
Query 332230 CTTTTAGCAA--ATTGTCGATGCGTTCTTCAAATTCACCACGATACTTAGTACCAGCAGT 332287
| | |||| ||| || || |||| |||||| ||||||||||| ||||||||||| |
Sbjct 88154 CATCAAGCAGCGATT-TC-ATACGTTTTTCAAAATCACCACGATATTTAGTACCAGCGAT 88097
Query 332288 CAATGCACCAACATTTA 332304
|| | ||||| || ||
Sbjct 88096 TAAAGAACCAATATCTA 88080
>seq214244
Length=1107
Score = 118 bits (130), Expect = 2e-21
Identities = 205/296 (69%), Gaps = 4/296 (1%)
Strand=Plus/Plus
Query 6078 TAATTCAGGTAATTCACGAGGTTTTCTCTGTAGTTGTTCTTTTACTTGTTCAACGTGGTT 6137
||||| ||||| || ||| ||| ||| ||||| |||| || ||||| ||| ||
Sbjct 80 TAATTTAGGTAGTTTTTTAGGAGATCTTAGTACTTGTTTTTTTGCTAATTCAATGTGATT 139
Query 6138 TTTATAAATGTGGCAATCACCACCATTCCAAATAAATTCACCAACATCTAAACCCGTAAT 6197
||||| | ||| |||||| || |||| | |||||| ||||| |||||| |
Sbjct 140 ATTATATAGATGGACATCACCTCCTGTCCATAAAAATTCTCCAACTTCTAAATCACATTG 199
Query 6198 TTGTGCAATCATATGAGTTAGTAGTGAATAACTACTGATATTAAATGGAACTCCCAAAAA 6257
|||||| ||||||||| | |||| || ||||||| |||||||| || | ||| | |||
Sbjct 200 TTGTGCTATCATATGAATAAGTATTGCATAACTAGCTATATTAAAAGGTAATCCAAGAAA 259
Query 6258 TAGATCAGCGGATCTTTGATGTAGAATGCAGCTTAGTTTCCCTTGT--ACTACACAAAAT 6315
|| |||| || | ||| | || || |||| ||| |||| | ||| ||||
Sbjct 260 TACATCACAAGAACGTTGGTAAAGTTGACAACTTAATTTT--TTGTTAAAAACATAAAAC 317
Query 6316 TGTACAAAGCTATGACAAGGTGGCAACGTCATATCATCAAGCTCACCAACGTTCCA 6371
|| | || ||||||||||||| || |||| | | || || ||||| |||||
Sbjct 318 TGAAATAATATATGACAAGGTGGTAATTTCATTTTGTTAATTTCTCCAACATTCCA 373
>seq249645
Length=476466
Score = 93.3 bits (102), Expect = 9e-14
Identities = 123/169 (73%), Gaps = 4/169 (2%)
Strand=Plus/Minus
Query 260008 TACAAAGTTTTGTTTACTTGGAAACAATAGTCCAGTTGACGCACACGGTTAAACTCAGTA 260067
|||| |||||||||| || | | ||||||| ||||| |||||||| ||| |
Sbjct 264968 TACATCGTTTTGTTTAACTGTACGCCGTAGTCCATATGACGGACACGGTTGTCTTCAACA 264909
Query 260068 CCTTTGTTATTTTTAAGGACTACCAAGTTATCAAATTCCAAATGCCACAATGGGAAGTGA 260127
|| ||||||||| || || | || |||| ||| |||||||| | |||| || |
Sbjct 264908 CCGCGGTTATTTTTGAGTACCAGTAATGACTCAACTTCTAAATGCCATAGTGGGTAG--A 264851
Query 260128 ACA--GTTGCTGCACCACCACGAACACCACCTTGTGAACAGCTTTTAAC 260174
||| || || ||||| ||||| || ||||||||||| |||| ||||||
Sbjct 264850 ACAACGTCGCAGCACCGCCACGTACGCCACCTTGTGAGCAGCATTTAAC 264802
>seq213831
Length=112690
Score = 91.5 bits (100), Expect = 3e-13
Identities = 100/129 (78%), Gaps = 3/129 (2%)
Strand=Plus/Minus
Query 210919 TTTGGCGGTGAAGGTGAGATTTGAACTCACGGAGGACTTTCG-CCCTCGACGGTTTTCAA 210977
|||||||| || || |||||| |||||| || ||| || | |||| | ||||||||||
Sbjct 15508 TTTGGCGGAGACGGAGAGATTCGAACTCTCGAAGGGCTATGAACCCTTGCCGGTTTTCAA 15449
Query 210978 GACCGTTGCATTAAACCGCTCTGCCACTTCACCAGTACT-AATAATTATAT-CACATCTT 211035
||||| |||||| |||||||||||||| || ||| | | || ||||||| || ||| |
Sbjct 15448 GACCGGTGCATTCAACCGCTCTGCCACGTCTCCATTGGTGCATCATTATATACAGATCAT 15389
Query 211036 TATGTGATG 211044
| | | |||
Sbjct 15388 TTTATAATG 15380
>seq117240
Length=334284
Score = 84.2 bits (92), Expect = 5e-11
Identities = 72/89 (81%), Gaps = 0/89 (0%)
Strand=Plus/Minus
Query 209109 TGGCAGTGAGTGTGGGATTCGAACCCACGATACGCTTTCGCATATGCTACCTTAGCAGGG 209168
|||| |||| | ||||||||||||| |||||||||| | | |||| | |||||||||||
Sbjct 318782 TGGCGGTGAAGGAGGGATTCGAACCCTCGATACGCTTACACGTATGGTTCCTTAGCAGGG 318723
Query 209169 TAGTGATTTCAACCACTCATCCAACTCAC 209197
| || ||||| ||||||| ||| ||||
Sbjct 318722 AACTGGTTTCAGCCACTCACCCACTTCAC 318694
>seq81543
Length=132751
Score = 84.2 bits (92), Expect = 5e-11
Identities = 115/161 (71%), Gaps = 0/161 (0%)
Strand=Plus/Plus
Query 6121 ACTTGTTCAACGTGGTTTTTATAAATGTGGCAATCACCACCATTCCAAATAAATTCACCA 6180
|||||||| |||||||| |||||| ||||||||||| || |||| ||||| ||||||
Sbjct 70590 ACTTGTTCGCGGTGGTTTTGATAAATATGGCAATCACCGCCTGTCCAGATAAACTCACCA 70649
Query 6181 ACATCTAAACCCGTAATTTGTGCAATCATATGAGTTAGTAGTGAATAACTACTGATATTA 6240
|| || || || || ||||| | ||| || || | || | || || |||||
Sbjct 70650 ACGTCCAATCCGCAAACCTGTGCGACCATGTGGGTCAAGAGCGCGTAGCTTGCAATATTG 70709
Query 6241 AATGGAACTCCCAAAAATAGATCAGCGGATCTTTGATGTAG 6281
||||| || || | |||| ||| || || | |||| |||
Sbjct 70710 AATGGCACACCTAGGAATAAATCCGCTGAGCGCTGATATAG 70750
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1110016802038944
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |