Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Arabis_20nordmanniana_20[genbank_20GCA_5F001484925.1_202016-01-04] 267,228 sequences; 342,306,570 total letters Query= NC_027399.1 Length=346602 Score E Sequences producing significant alignments: (Bits) Value seq56932 131 4e-25 seq249645 98.7 2e-15 >seq56932 Length=160465 Score = 131 bits (144), Expect = 4e-25 Identities = 212/302 (70%), Gaps = 6/302 (2%) Strand=Plus/Plus Query 48466 CTGTAACTGCTGGTACAAAATACCGTGGTGAATTCGAAGAACGTATGGAAGGTATTATTA 48525 || ||| |||||||| ||||| |||||||| || ||| |||||||| || | || Sbjct 88092 CTTTAATCGCTGGTACTAAATATCGTGGTGATTTTGAAAAACGTATGAAATCGCTGCTTG 88151 Query 48526 AAGAACTTAAAAAACGAGAAAATGTAATTTTGTTCATTGATGAAGTACATATTATGATGG 48585 | | |||||| ||| | ||||| || |||||||||||||| | ||||| || || | Sbjct 88152 ATGCACTTAAGAAAAAACCAAATGCCATCTTGTTCATTGATGAGATCCATATGATTATTG 88211 Query 48586 GTGCTGG-TGGT--AGCAGCACTGGATCTATGGATATGAGCAATATCATGAAACCTGCAC 48642 | || || | || | |||| | ||||||| || ||| | || ||||| |||| Sbjct 88212 GCGCAGGGTCGTCAATGAGCAGTAA---TATGGATGTGTCAAATCTGATCAAACCAGCAC 88268 Query 48643 TTTCACGTGGTGATATTCGTGTTATCGGTGCAACAACTTATGAGGAATATCGCCAGAACA 48702 || || |||||| | ||| ||| ||| ||||||| | | |||||||| || Sbjct 88269 TTGCAAATGGTGAGCTGCGTTGTATTGGTTCAACAACCTTTACCGAATATCGTCAAGTGT 88328 Query 48703 TTGAAAAAGATGCTGCATTTTCCCGCCGCTTCACTAAAATTGATGTAGTTGAACCTAGTA 48762 ||||||||||| |||||| || || || ||| ||||||||||| ||||| ||| Sbjct 88329 TTGAAAAAGATCATGCATTGTCACGTCGTTTCCAAAAAATTGATGTGAAAGAACCAAGTG 88388 Query 48763 TT 48764 || Sbjct 88389 TT 88390 >seq249645 Length=476466 Score = 98.7 bits (108), Expect = 2e-15 Identities = 257/390 (66%), Gaps = 8/390 (2%) Strand=Plus/Plus Query 130801 GGTGTTGGCACACATACTATCAATGGTAAAGAACTTGTTATTGACATGTATGAACTGAAA 130860 |||| |||||| |||| ||||||||| |||||| | | || | | ||||||| Sbjct 268698 GGTGCTGGCACGCATAATATCAATGGCAAAGAAATCACGGTCGATTTACGCGCACTGAAA 268757 Query 130861 AAGAAACTGTGGTTGTGCTTAAATTCCATTAACGTATTGGAGGGTATACGATTTTATGTC 130920 ||| | ||| ||||| | | | | ||||| | || | || || || |||||| Sbjct 268758 AAGCAGATGTATCTGTGCATCATGGCGGTCAACGTCCTAGAAGCCATTCGTTTCTATGTC 268817 Query 130921 TCATTCGCTGCATCCTTTGCATTTGGTGAAAATAAAATCATGGAAGGTAATGCCAAGATC 130980 || || ||| || ||||| |||| ||| ||| | ||||||||||||||||| ||| Sbjct 268818 TCGTTTGCTTGCTCGTTTGCGTTTGCTGAGCGCAAATTGATGGAAGGTAATGCCAAAATC 268877 Query 130981 ATTAGACTAATTGCGAGGGATGAGTCTCTCCATTTAGCAGCAACTCAAATGATGCTTCGT 131040 |||| || || || | ||||| | || ||||| ||| || || ||||| Sbjct 268878 ATTAAGCTCATCGCTCGTGATGAAGCGCTGCATTTGACAGGTACGCAGCATATGCTAAAC 268937 Query 131041 TTGTTGAAAAA------AGAAGATCCAGACTTTGTTAAAATTTCTGAAGAATGCTATGAT 131094 | || || || ||||| || | || | ||| | | ||| || | ||| Sbjct 268938 CTCATGCGCAACGGTCGTGACGATCCTGAGATGGTCGAGATTGCCGCAGAGTGTTTCGAT 268997 Query 131095 G-AAGTCCAGAGTATGTTCCTGGATGCTATTAAGCAAGAAGAAGACTGGGCTGATTATCT 131153 | |||| || || |||| | ||| | |||||||| |||| ||||| | ||||| Sbjct 268998 GAAAGTATTGA-AATCTTCCGCAAAGCTGCTGAGCAAGAAAAAGAATGGGCAGGCTATCT 269056 Query 131154 ATTTAAAGATGGTTCTATTATTGGTCTTAA 131183 || |||||||| || || |||||||| || Sbjct 269057 GTTCAAAGATGGCTCGATGATTGGTCTAAA 269086 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1105198157080772