Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Arabis_20nordmanniana_20[genbank_20GCA_5F001484925.1_202016-01-04]
267,228 sequences; 342,306,570 total letters
Query= NC_027404.1
Length=167785
Score E
Sequences producing significant alignments: (Bits) Value
seq26767 215 5e-51
seq249645 111 2e-19
seq127984 89.7 6e-13
>seq26767
Length=1149
Score = 215 bits (238), Expect = 5e-51
Identities = 321/452 (71%), Gaps = 10/452 (2%)
Strand=Plus/Plus
Query 138869 CATCAAATCATTCAGCTGAACACCATAATCCATATGACGAATGCGGTTTTCTTCTACGCC 138928
|||||| | ||| | || || ||||||| | ||||| | | |||||||| | |||
Sbjct 33 CATCAATTTATTAATTTGTACTGCATAATCAACGTGACGTACTCTATTTTCTTCAATGCC 92
Query 138929 TTTGTTATTTTTCAAAACGAGAAGATTTTCAACTTCCAAATGCCAAATAGGATAATAAGC 138988
| |||||||| ||||| | | | |||||| ||| |||||||| || |||||| |
Sbjct 93 CCTATTATTTTTTAAAACTAATAAACTTTCAATTTCAAAATGCCATATTGGATAAAATAT 152
Query 138989 AGTAGCAGCGCCGCCACGAATTCCACCCTGTGAGCATGATTTAACAGCAGTCTGAAAATG 139048
||| || || || || | || ||| || || || || ||||| |||||| | ||||||||
Sbjct 153 AGTTGCCGCTCCACCTCTAACTCCTCCTTGAGAACAGGATTTTACAGCACTTTGAAAATG 212
Query 139049 TTTCCAAAAAGGAATAACACCAGTATGGCGTACTTCACCCATGCCAATCTTAGAACCTTC 139108
||| ||||||||||| ||||||||| | |||| || | | ||| | |||| |
Sbjct 213 TTTATAAAAAGGAATACAACCAGTATGAAATGCTTCGCCATTTCTAATAGGACTACCTAC 272
Query 139109 GGCACGAATCATACCAACGTTAATACCAATTCCAGCGCGTTTAGAGATATATTCAACAAT 139168
|||||||| | ||| | |||||||||||||| || |||| ||| | ||||| |||||
Sbjct 273 TGCACGAATTTTTCCAGCATTAATACCAATTCCTGCTCGTTGAGAAACATATTTTACAAT 332
Query 139169 TGA---AGCGGAAGCCTTATTGATAGACTTCAATGAATCTCCTGCC--TCAATAACAACA 139223
|| || | ||| ||| ||||| | | || | || | | ||||| | ||||
Sbjct 333 AGAACTAGTAGTAGCGTTA---ATAGAATCTA--GATTATCATCACATTCAATTAAAACA 387
Query 139224 CATGAACTAAACTGTCGAGTCGGAGTACGACAACCAGCCATAATAGGAGTTGGTAATGAA 139283
||||| ||||| |||||||| ||||| | | |||| |||||| || || ||||| |||
Sbjct 388 CATGAGCTAAATTGTCGAGTAGGAGTTCTAACTCCAGACATAATTGGTGTCGGTAAAGAA 447
Query 139284 ATCTGTCGGGTTGATACCGCTTCATAAAAACG 139315
|| | ||||| | || | |||||||||
Sbjct 448 ATTTTGAAAGTTGAAATGGCATTATAAAAACG 479
>seq249645
Length=476466
Score = 111 bits (122), Expect = 2e-19
Identities = 147/204 (72%), Gaps = 0/204 (0%)
Strand=Plus/Minus
Query 138884 CTGAACACCATAATCCATATGACGAATGCGGTTTTCTTCTACGCCTTTGTTATTTTTCAA 138943
||| || || || ||||||||||| | ||||| ||||| || || ||||||||| |
Sbjct 264951 CTGTACGCCGTAGTCCATATGACGGACACGGTTGTCTTCAACACCGCGGTTATTTTTGAG 264892
Query 138944 AACGAGAAGATTTTCAACTTCCAAATGCCAAATAGGATAATAAGCAGTAGCAGCGCCGCC 139003
|| || | |||||||| |||||||| | || || | || ||||| |||||
Sbjct 264891 TACCAGTAATGACTCAACTTCTAAATGCCATAGTGGGTAGAACAACGTCGCAGCACCGCC 264832
Query 139004 ACGAATTCCACCCTGTGAGCATGATTTAACAGCAGTCTGAAAATGTTTCCAAAAAGGAAT 139063
||| | ||||| |||||||| ||||||| || || || || ||| ||||||||||
Sbjct 264831 ACGTACGCCACCTTGTGAGCAGCATTTAACGGCCGTTTGGAACAATTTATAAAAAGGAAT 264772
Query 139064 AACACCAGTATGGCGTACTTCACC 139087
| |||||||| || |||||||
Sbjct 264771 ACAGCCAGTATGCTGTGCTTCACC 264748
>seq127984
Length=21361
Score = 89.7 bits (98), Expect = 6e-13
Identities = 69/82 (84%), Gaps = 0/82 (0%)
Strand=Plus/Minus
Query 68829 TAAATTGGAGCGGATAATGAGAATCGAACTCACATCATCAGATTGGAAGTCTGAGGTAAT 68888
||||||||||||| | | ||||||||||||| ||||||||| ||||||| ||||||| |
Sbjct 19915 TAAATTGGAGCGGGTGAAGAGAATCGAACTCTCATCATCAGCTTGGAAGGCTGAGGTTTT 19856
Query 68889 ACCATTATACGATATCCGCAAA 68910
|||| || || | | |||||||
Sbjct 19855 ACCACTAAACTACACCCGCAAA 19834
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 534990953565600
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |