Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Arabis_20nordmanniana_20[genbank_20GCA_5F001484925.1_202016-01-04]
267,228 sequences; 342,306,570 total letters
Query= NC_027778.1
Length=124244
Score E
Sequences producing significant alignments: (Bits) Value
seq27195 129 5e-25
seq34509 89.7 4e-13
seq255492 84.2 2e-11
>seq27195
Length=13093
Score = 129 bits (142), Expect = 5e-25
Identities = 255/372 (69%), Gaps = 4/372 (1%)
Strand=Plus/Plus
Query 43915 AGAAGTTCAATTACCAGAAGCACGATGTTTTTATGGGTTTCAAATTGCCATAGAAAATAT 43974
||| || ||| | | ||||| || ||| || || || || || || || || |||||
Sbjct 8866 AGATGTACAAGTCTCTGAAGCGCGTGCTTTCTACGGATTCCAGATCGCGATTGAGAATAT 8925
Query 43975 TCATTCGGAAATGTACAGTCTTCTGATAGATACGTACATCAAAGATGGGCACGAGAAGCA 44034
||||| || ||||| ||||| || | ||||| |||||||||||| | |||| |
Sbjct 8926 CCATTCTGAGATGTATAGTCTCCTTCTGGATACATACATCAAAGATAACAAAGAGAGAGA 8985
Query 44035 TCGATTGTTTAATGCGATAGAAACAGTACCT-GCGATTAAACATAAAGCAGACTGGGCCC 44093
|| | || || || |||||| | ||| ||| | | ||||| | |||||
Sbjct 8986 TCATCTCTTCCGCGCAATCGAAACAATCCCTTGCGTCGCTA-AGAAAGCTCAATGGGCTA 9044
Query 44094 TTAAATGGATAAATTCAAATGATTCTTTTGGAGAACGACTTGTCGCGTTTGCAGTTGTGG 44153
| | |||||| || | | | |||| | |||||| | ||||| || || || |
Sbjct 9045 TGACATGGATCGATGGATCTCAGACTTTCGCTGAACGAATCGTCGCTTTCGCGTGCGTCG 9104
Query 44154 AAGGCATTTTCTTTTCAGGATCGTTTGCGGCC-ATATTTTGGTTAAAGAAACGAGGTTTG 44212
|||| || ||||| || || | | || | | || || ||| | || |||||||| |
Sbjct 9105 AAGGTATCTTCTTCTCCGG-TAGCTTCTGTTCGATTTTCTGGCTCAAAAAACGAGGGCTC 9163
Query 44213 ATGCCTGGGTTGACGTTTTCAAATGAGTTAATAAGTCGTGATGAAGGCTTACATTGCGAT 44272
||||||||||| || || ||||| |||||||| || || ||||||||||| ||||||
Sbjct 9164 ATGCCTGGGTTAACTTTCTCAAACGAGTTAATCTCACGAGACGAAGGCTTACACTGCGAT 9223
Query 44273 TTTGCTTGCTTG 44284
|| |||||| ||
Sbjct 9224 TTCGCTTGCCTG 9235
>seq34509
Length=4973
Score = 89.7 bits (98), Expect = 4e-13
Identities = 230/343 (67%), Gaps = 8/343 (2%)
Strand=Plus/Plus
Query 40925 TATGTACTCTGATTATACCAATAAAGGAATGGATCAATTA-CAGTGCGTTATAGATACGA 40983
|||| | |||||||||| | ||||| | |||||| | ||| || || || | ||
Sbjct 2213 TATGCATGCTGATTATACTGGTCAAGGATTTGATCAACTCGCAGAT-GTGATCGACAAGA 2271
Query 40984 TTAAATCCGATCCCGATAGCCGACGTATAATATTGTGCGCGTGGAACCCAACGGACGTAC 41043
| ||| | |||| || || || || ||||| | || ||||| || | || |
Sbjct 2272 TAAAAAACAATCCTGACGATCGGCGCATTATATTATCAGCTTGGAATCCTTCTGATCTTA 2331
Query 41044 ATTTGATGGCATTGCCACCTTGTCATTTGTTATGTCAGTTTTACGTTTGCA-ATGGTGAA 41102
| ||||||||| | || || || || |||| ||||| || || ||| | || ||
Sbjct 2332 AGTTGATGGCACTTCCTCCATGCCACATGTTTGCACAGTTCTATGTG-GCAGACGGGGAG 2390
Query 41103 CTGTCATGTCAATTGTATCAAAGATCAGGTGACATGGGACTAGGGGTCCCGTTTAACATA 41162
|| ||||||||| ||||||| | |||| |||||||| || || || |||||||||||
Sbjct 2391 CTCTCATGTCAAATGTATCAGCGTTCAGCAGACATGGGTCTTGGTGTGCCGTTTAACATT 2450
Query 41163 GCGAGTTATGCTCTGCTCACGTATATGATTGCACACGTTACCAATTTAAAACCTGGTGAA 41222
||| || |||| || || | || | || ||||| || | ||||||||
Sbjct 2451 GCGTCCTACTCTCTTCTTACTTGCATACTCGCTCACGTGTGTGATCTTGTTCCTGGTGAT 2510
Query 41223 TTTGTTCACACGTTA--GGAGATGGACATATTTACATTAATCA 41263
||| | || |||| || ||||| ||| | |||| |||||
Sbjct 2511 TTTAT--CCATGTTATTGGGGATGGTCATGTGTACAAAAATCA 2551
>seq255492
Length=11799
Score = 84.2 bits (92), Expect = 2e-11
Identities = 167/242 (69%), Gaps = 4/242 (2%)
Strand=Plus/Minus
Query 40925 TATGTACTCTGATTATACCAATAAAGGAATGGATCAATTA-CAGTGCGTTATAGATACGA 40983
|||| | |||||||||| | ||||| | |||||| | ||| || || || | ||
Sbjct 6789 TATGCATGCTGATTATACTGGTCAAGGATTTGATCAACTCGCAGAT-GTAATCGACAAGA 6731
Query 40984 TTAAATCCGATCCCGATAGCCGACGTATAATATTGTGCGCGTGGAACCCAACGGACGTAC 41043
| | | | |||| ||| || || || ||||| | || ||||| || | ||| |
Sbjct 6730 TCAGAAACAATCCTGATGATCGCCGCATTATATTATCGGCTTGGAATCCTTCTGACCTTA 6671
Query 41044 ATTTGATGGCATTGCCACCTTGTCATTTGTTATGTCAGTTTTACGTTTGCA-ATGGTGAA 41102
| |||||||| | || || || || |||| ||||| || || ||| | || ||
Sbjct 6670 AGTTGATGGCGCTTCCTCCATGCCACATGTTTGCACAGTTCTATGTA-GCAGAAGGGGAG 6612
Query 41103 CTGTCATGTCAATTGTATCAAAGATCAGGTGACATGGGACTAGGGGTCCCGTTTAACATA 41162
|| ||||||||| ||||||| | |||| |||||||| || || || |||||||||||
Sbjct 6611 CTCTCATGTCAAATGTATCAGCGTTCAGCGGACATGGGTCTTGGTGTGCCGTTTAACATT 6552
Query 41163 GC 41164
||
Sbjct 6551 GC 6550
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 396161548904140
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |