Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Arabis_20nordmanniana_20[genbank_20GCA_5F001484925.1_202016-01-04] 267,228 sequences; 342,306,570 total letters Query= NC_027778.1 Length=124244 Score E Sequences producing significant alignments: (Bits) Value seq27195 129 5e-25 seq34509 89.7 4e-13 seq255492 84.2 2e-11 >seq27195 Length=13093 Score = 129 bits (142), Expect = 5e-25 Identities = 255/372 (69%), Gaps = 4/372 (1%) Strand=Plus/Plus Query 43915 AGAAGTTCAATTACCAGAAGCACGATGTTTTTATGGGTTTCAAATTGCCATAGAAAATAT 43974 ||| || ||| | | ||||| || ||| || || || || || || || || ||||| Sbjct 8866 AGATGTACAAGTCTCTGAAGCGCGTGCTTTCTACGGATTCCAGATCGCGATTGAGAATAT 8925 Query 43975 TCATTCGGAAATGTACAGTCTTCTGATAGATACGTACATCAAAGATGGGCACGAGAAGCA 44034 ||||| || ||||| ||||| || | ||||| |||||||||||| | |||| | Sbjct 8926 CCATTCTGAGATGTATAGTCTCCTTCTGGATACATACATCAAAGATAACAAAGAGAGAGA 8985 Query 44035 TCGATTGTTTAATGCGATAGAAACAGTACCT-GCGATTAAACATAAAGCAGACTGGGCCC 44093 || | || || || |||||| | ||| ||| | | ||||| | ||||| Sbjct 8986 TCATCTCTTCCGCGCAATCGAAACAATCCCTTGCGTCGCTA-AGAAAGCTCAATGGGCTA 9044 Query 44094 TTAAATGGATAAATTCAAATGATTCTTTTGGAGAACGACTTGTCGCGTTTGCAGTTGTGG 44153 | | |||||| || | | | |||| | |||||| | ||||| || || || | Sbjct 9045 TGACATGGATCGATGGATCTCAGACTTTCGCTGAACGAATCGTCGCTTTCGCGTGCGTCG 9104 Query 44154 AAGGCATTTTCTTTTCAGGATCGTTTGCGGCC-ATATTTTGGTTAAAGAAACGAGGTTTG 44212 |||| || ||||| || || | | || | | || || ||| | || |||||||| | Sbjct 9105 AAGGTATCTTCTTCTCCGG-TAGCTTCTGTTCGATTTTCTGGCTCAAAAAACGAGGGCTC 9163 Query 44213 ATGCCTGGGTTGACGTTTTCAAATGAGTTAATAAGTCGTGATGAAGGCTTACATTGCGAT 44272 ||||||||||| || || ||||| |||||||| || || ||||||||||| |||||| Sbjct 9164 ATGCCTGGGTTAACTTTCTCAAACGAGTTAATCTCACGAGACGAAGGCTTACACTGCGAT 9223 Query 44273 TTTGCTTGCTTG 44284 || |||||| || Sbjct 9224 TTCGCTTGCCTG 9235 >seq34509 Length=4973 Score = 89.7 bits (98), Expect = 4e-13 Identities = 230/343 (67%), Gaps = 8/343 (2%) Strand=Plus/Plus Query 40925 TATGTACTCTGATTATACCAATAAAGGAATGGATCAATTA-CAGTGCGTTATAGATACGA 40983 |||| | |||||||||| | ||||| | |||||| | ||| || || || | || Sbjct 2213 TATGCATGCTGATTATACTGGTCAAGGATTTGATCAACTCGCAGAT-GTGATCGACAAGA 2271 Query 40984 TTAAATCCGATCCCGATAGCCGACGTATAATATTGTGCGCGTGGAACCCAACGGACGTAC 41043 | ||| | |||| || || || || ||||| | || ||||| || | || | Sbjct 2272 TAAAAAACAATCCTGACGATCGGCGCATTATATTATCAGCTTGGAATCCTTCTGATCTTA 2331 Query 41044 ATTTGATGGCATTGCCACCTTGTCATTTGTTATGTCAGTTTTACGTTTGCA-ATGGTGAA 41102 | ||||||||| | || || || || |||| ||||| || || ||| | || || Sbjct 2332 AGTTGATGGCACTTCCTCCATGCCACATGTTTGCACAGTTCTATGTG-GCAGACGGGGAG 2390 Query 41103 CTGTCATGTCAATTGTATCAAAGATCAGGTGACATGGGACTAGGGGTCCCGTTTAACATA 41162 || ||||||||| ||||||| | |||| |||||||| || || || ||||||||||| Sbjct 2391 CTCTCATGTCAAATGTATCAGCGTTCAGCAGACATGGGTCTTGGTGTGCCGTTTAACATT 2450 Query 41163 GCGAGTTATGCTCTGCTCACGTATATGATTGCACACGTTACCAATTTAAAACCTGGTGAA 41222 ||| || |||| || || | || | || ||||| || | |||||||| Sbjct 2451 GCGTCCTACTCTCTTCTTACTTGCATACTCGCTCACGTGTGTGATCTTGTTCCTGGTGAT 2510 Query 41223 TTTGTTCACACGTTA--GGAGATGGACATATTTACATTAATCA 41263 ||| | || |||| || ||||| ||| | |||| ||||| Sbjct 2511 TTTAT--CCATGTTATTGGGGATGGTCATGTGTACAAAAATCA 2551 >seq255492 Length=11799 Score = 84.2 bits (92), Expect = 2e-11 Identities = 167/242 (69%), Gaps = 4/242 (2%) Strand=Plus/Minus Query 40925 TATGTACTCTGATTATACCAATAAAGGAATGGATCAATTA-CAGTGCGTTATAGATACGA 40983 |||| | |||||||||| | ||||| | |||||| | ||| || || || | || Sbjct 6789 TATGCATGCTGATTATACTGGTCAAGGATTTGATCAACTCGCAGAT-GTAATCGACAAGA 6731 Query 40984 TTAAATCCGATCCCGATAGCCGACGTATAATATTGTGCGCGTGGAACCCAACGGACGTAC 41043 | | | | |||| ||| || || || ||||| | || ||||| || | ||| | Sbjct 6730 TCAGAAACAATCCTGATGATCGCCGCATTATATTATCGGCTTGGAATCCTTCTGACCTTA 6671 Query 41044 ATTTGATGGCATTGCCACCTTGTCATTTGTTATGTCAGTTTTACGTTTGCA-ATGGTGAA 41102 | |||||||| | || || || || |||| ||||| || || ||| | || || Sbjct 6670 AGTTGATGGCGCTTCCTCCATGCCACATGTTTGCACAGTTCTATGTA-GCAGAAGGGGAG 6612 Query 41103 CTGTCATGTCAATTGTATCAAAGATCAGGTGACATGGGACTAGGGGTCCCGTTTAACATA 41162 || ||||||||| ||||||| | |||| |||||||| || || || ||||||||||| Sbjct 6611 CTCTCATGTCAAATGTATCAGCGTTCAGCGGACATGGGTCTTGGTGTGCCGTTTAACATT 6552 Query 41163 GC 41164 || Sbjct 6551 GC 6550 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 396161548904140