Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Arabis_20nordmanniana_20[genbank_20GCA_5F001484925.1_202016-01-04] 267,228 sequences; 342,306,570 total letters Query= NC_027983.1 Length=167435 Score E Sequences producing significant alignments: (Bits) Value seq26767 224 1e-53 seq249645 114 1e-20 seq127984 96.9 4e-15 >seq26767 Length=1149 Score = 224 bits (248), Expect = 1e-53 Identities = 324/453 (72%), Gaps = 12/453 (3%) Strand=Plus/Plus Query 139889 CATCAAATCATTCAGTTGAACACCATAATCCATATGACGAATGCGGTTTTCTTCTACGCC 139948 |||||| | ||| | ||| || ||||||| | ||||| | | |||||||| | ||| Sbjct 33 CATCAATTTATTAATTTGTACTGCATAATCAACGTGACGTACTCTATTTTCTTCAATGCC 92 Query 139949 TTTGTTATTTTTCAAAACGAGAAGATTTTCAACTTCCAAATGCCAAATAGGATAATAAGC 140008 | |||||||| ||||| | | | |||||| ||| |||||||| || |||||| | Sbjct 93 CCTATTATTTTTTAAAACTAATAAACTTTCAATTTCAAAATGCCATATTGGATAAAATAT 152 Query 140009 AGTAGCAGCGCCGCCACGAATTCCACCCTGTGAACATGATTTAACTGCAGTCTGAAAATG 140068 ||| || || || || | || ||| || || ||||| ||||| || ||| | |||||||| Sbjct 153 AGTTGCCGCTCCACCTCTAACTCCTCCTTGAGAACAGGATTTTACAGCACTTTGAAAATG 212 Query 140069 TTTCCAAAAAGGAATAACACCAGTATGGCGTACTTCACCCATGCCAATCTTAGAACCTTC 140128 ||| ||||||||||| ||||||||| | |||| || | | ||| | |||| | Sbjct 213 TTTATAAAAAGGAATACAACCAGTATGAAATGCTTCGCCATTTCTAATAGGACTACCTAC 272 Query 140129 GGCACGAATCATACCAACGTTAATACCAATTCCAGCGCGTTTAGAGATATATTCTACAAT 140188 |||||||| | ||| | |||||||||||||| || |||| ||| | ||||| |||||| Sbjct 273 TGCACGAATTTTTCCAGCATTAATACCAATTCCTGCTCGTTGAGAAACATATTTTACAAT 332 Query 140189 CGA---AGCGGAAGCCTTATTGATAGACTTTA-ATGA--ATCACCTGCCTCAATAACAAC 140242 || || | ||| ||| ||||| | || || | ||||| | ||||| | ||| Sbjct 333 AGAACTAGTAGTAGCGTTA---ATAGAATCTAGATTATCATCACAT---TCAATTAAAAC 386 Query 140243 ACATGAACTAAACTGTCGAGTCGGAGTACGGCAACCAGCCATAATAGGAGTTGGCAATGA 140302 |||||| ||||| |||||||| ||||| | |||| |||||| || || || || || Sbjct 387 ACATGAGCTAAATTGTCGAGTAGGAGTTCTAACTCCAGACATAATTGGTGTCGGTAAAGA 446 Query 140303 AATCTGTCGAGTAGATACTGCTTCATAAAAACG 140335 ||| | ||| || | || | ||||||||| Sbjct 447 AATTTTGAAAGTTGAAATGGCATTATAAAAACG 479 >seq249645 Length=476466 Score = 114 bits (126), Expect = 1e-20 Identities = 271/407 (67%), Gaps = 12/407 (3%) Strand=Plus/Minus Query 139905 TGAACACCATAATCCATATGACGAATGCGGTTTTCTTCTACGCCTTTGTTATTTTTCAAA 139964 || || || || ||||||||||| | ||||| ||||| || || ||||||||| | Sbjct 264950 TGTACGCCGTAGTCCATATGACGGACACGGTTGTCTTCAACACCGCGGTTATTTTTGAGT 264891 Query 139965 ACGAGAAGATTTTCAACTTCCAAATGCCAAATAGGATAATAAGCAGTAGCAGCGCCGCCA 140024 || || | |||||||| |||||||| | || || | || ||||| |||||| Sbjct 264890 ACCAGTAATGACTCAACTTCTAAATGCCATAGTGGGTAGAACAACGTCGCAGCACCGCCA 264831 Query 140025 CGAATTCCACCCTGTGAACATGATTTAACTGCAGTCTGAAAATGTTTCCAAAAAGGAATA 140084 || | ||||| ||||| || ||||||| || || || || ||| ||||||||||| Sbjct 264830 CGTACGCCACCTTGTGAGCAGCATTTAACGGCCGTTTGGAACAATTTATAAAAAGGAATA 264771 Query 140085 ACACCAGTATGGCGTACTTCACCCATGCCAATCTTAG---AACCTTCGGCACGAATCATA 140141 |||||||| || ||||||| |||| ||| ||| |||||| || | Sbjct 264770 CAGCCAGTATGCTGTGCTTCACC---GCCACGGATAGGGCTACCAAGGGCACGGATACGA 264714 Query 140142 CCAACGTTAATACCAATTCCAGCGCGTTTAGAGATATATTCTACAATCG---AAGCGGAA 140198 || |||| || || || ||||| || | || | ||| ||| || | || || Sbjct 264713 CCTGCGTTGATGCCGATACCAGCACGCTGTGACACATAGCGTACGATGGCGCTAGTGGTG 264654 Query 140199 GCCTTATTGATAGACTTTAATGAATCACCTGCCTCAATAACAACACATGAACTAAACTGT 140258 || |||||||| | ||| |||||| || || | || || || |||||||| Sbjct 264653 GC---GTTGATAGAGTCTAAGCTATCACCACATTCGATTAAGACGCACGAGCTAAACTGA 264597 Query 140259 CGAGTCGGAGTACGGCAACCAGCCATAATAGGAGTTGGCAATGAAAT 140305 || | || ||||| ||| | ||| || || ||||| | ||| || Sbjct 264596 CGCGATGGCGTACGCACACCTGACATGATTGGCGTTGGTAGTGAGAT 264550 Score = 84.2 bits (92), Expect = 2e-11 Identities = 70/86 (81%), Gaps = 0/86 (0%) Strand=Plus/Minus Query 138948 TCAATATTGGGCACGACTTGATTAAAGGAGCCCTCTTTTGATTCTTTAACAGAGACTGGT 139007 ||||| | ||||||||||| || ||| ||| ||||||||| |||| | |||||| | Sbjct 265916 TCAATCTCAGGCACGACTTGCTTTAAGATGCCATCTTTTGATGCTTTGATAGAGACCAGA 265857 Query 139008 CCACGTGGAGGCTCGATACCGTTTGT 139033 |||||||| |||||||||||||| || Sbjct 265856 CCACGTGGTGGCTCGATACCGTTGGT 265831 >seq127984 Length=21361 Score = 96.9 bits (106), Expect = 4e-15 Identities = 73/86 (85%), Gaps = 0/86 (0%) Strand=Plus/Minus Query 69676 GTCATAAATTGGAGCGGATAATGAGAATCGAACTCACATCATCAGATTGGAAGTCTGAGG 69735 ||||||||||||||||| | | ||||||||||||| ||||||||| ||||||| |||||| Sbjct 19919 GTCATAAATTGGAGCGGGTGAAGAGAATCGAACTCTCATCATCAGCTTGGAAGGCTGAGG 19860 Query 69736 TAATACCATTATACGATATCCGCAAA 69761 | ||||| || || | | ||||||| Sbjct 19859 TTTTACCACTAAACTACACCCGCAAA 19834 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 533874694757600