Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Arabis_20nordmanniana_20[genbank_20GCA_5F001484925.1_202016-01-04] 267,228 sequences; 342,306,570 total letters Query= NC_027990.1 Length=48211 Score E Sequences producing significant alignments: (Bits) Value seq198922 356 7e-94 seq22188 80.6 8e-11 >seq198922 Length=1251 Score = 356 bits (394), Expect = 7e-94 Identities = 307/380 (81%), Gaps = 0/380 (0%) Strand=Plus/Plus Query 46677 AAAGTTAACGTCACCGATATGCGTAAACCAGCCAGCGATGTAGCGGGAATTGAAGAAGTT 46736 ||||| || || |||||||||||||||| || | ||||| |||||||| ||||||||| Sbjct 868 AAAGTAAATGTAGCCGATATGCGTAAACCTGCAGGAGATGTTGCGGGAATCGAAGAAGTT 927 Query 46737 AACGCCAAGCAAGATAAAATTGGTTACACACCTGCTGATGATTCCAAAGTTTTACATTCA 46796 || ||||||||||||||||||||||||||||| ||||| ||| || ||| | ||| | Sbjct 928 AATGCCAAGCAAGATAAAATTGGTTACACACCAGCTGACGATAGTAAGGTTGTTCATACT 987 Query 46797 ACTGTAACTGACTTAAAGTCAACTGATATGAATACTGTTATCACTGCTGGGTTTTATATG 46856 || || ||| | |||| ||||| ||||||||||||||| | |||||||| ||||||| Sbjct 988 ACAGTTACTCAATTAACTTCAACCGATATGAATACTGTTTTAACTGCTGGATTTTATAGT 1047 Query 46857 TTACGTAGTGGAACTAATGGAATACCAAGTGGAGATGACCATACTATTTATCAGGTAATT 46916 ||| ||||||||||||||| || || | || |||| || |||||||| |||||| Sbjct 1048 TTAAATAGTGGAACTAATGGGATGCCTAATGCGGATGCGTGGACAATTTATCAAGTAATT 1107 Query 46917 CCTTATTATTCGTCAAATGGGGTTCAACTTGCATACGGAACAAATAGCGTTGTTTTAGGA 46976 |||| | | | |||||||||||| |||||||||||||||||| | |||||||| Sbjct 1108 CCTTTATCTAGTTTTAATGGGGTTCAATTTGCATACGGAACAAATAATGACATTTTAGGA 1167 Query 46977 ATGCGTTGTTGGAATAATTATAATCATTTTACTAGTTGGGTTAAGTTTGCTGATGATTCC 47036 ||||||| |||| ||||| |||| |||| ||||||||||| |||||||||| |||||| Sbjct 1168 ATGCGTTCTTGGCATAATGGTAATATTTTTGCTAGTTGGGTTCAGTTTGCTGACGATTCC 1227 Query 47037 AAAGTCGCTCACCTATCTGG 47056 ||||| || ||||||||||| Sbjct 1228 AAAGTTGCCCACCTATCTGG 1247 >seq22188 Length=484 Score = 80.6 bits (88), Expect = 8e-11 Identities = 71/89 (80%), Gaps = 0/89 (0%) Strand=Plus/Minus Query 47035 CCAAAGTCGCTCACCTATCTGGTACTAACAACTTTGATACCGTTCCAACGGTTAATAATA 47094 ||||||| || ||||||||||| ||||||| || || || || ||||| ||||| |||| Sbjct 484 CCAAAGTTGCCCACCTATCTGGAGCTAACAATTTCGACACTGTCCCAACTGTTAACAATA 425 Query 47095 ATCCGTTACTATTAACAAGCAGTTTGCCA 47123 |||| || || || ||||||| || ||| Sbjct 424 ATCCACTATTACTAGCAAGCAGCTTACCA 396 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 153664419371128