Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Arabis_20nordmanniana_20[genbank_20GCA_5F001484925.1_202016-01-04] 267,228 sequences; 342,306,570 total letters Query= NC_027995.1 Length=41666 Score E Sequences producing significant alignments: (Bits) Value seq131434 104 6e-18 seq104206 98.7 3e-16 >seq131434 Length=304 Score = 104 bits (114), Expect = 6e-18 Identities = 163/233 (70%), Gaps = 3/233 (1%) Strand=Plus/Minus Query 41188 TTGGCAACTTAGGCAACGATCCAGAAATCCGTTACATGCCAAGCGGCGGCGCGGTTGCTA 41247 |||| ||| |||| ||||||||| | ||||||||||| | || | || ||| || Sbjct 292 TTGGTAACCTAGGGCGTGATCCAGAAGTGCGTTACATGCCCAATGGTGAGGCTGTTTGTA 233 Query 41248 ATCTAAGCATCGCCACAACTGAAAGCTGGAAGGATAAAACCACCGGCGAGAAGAAAGAAC 41307 | | || |||||||| || |||| |||||| |||||| | ||||| || ||||| Sbjct 232 ACTTTAGTATCGCCACGACAGAAAACTGGAAAGATAAA---AGCGGCGTTAAACAAGAAA 176 Query 41308 AAACGGAATGGCACCGCGTTGTCATCTTCGGTAAGCTGGCAGAAATTGCTAGCGAATACC 41367 |||| ||||||||| |||| || | | || | |||||||||||| ||||||| | Sbjct 175 AAACCGAATGGCACAATATTGTAATGTACCGTCGTTTAGCAGAAATTGCTGGCGAATATC 116 Query 41368 TGCGCAAAGGTAGCAAGGTGTTCATTGAAGGCAGCCTGCGAACGCGTAAATGG 41420 | ||||| || || | | |||||| | | | ||| ||||||||| Sbjct 115 TTAAAAAAGGCCGCCCTGTTTATGTGGAAGGCCGTTTACAAACCCGTAAATGG 63 >seq104206 Length=286 Score = 98.7 bits (108), Expect = 3e-16 Identities = 174/254 (69%), Gaps = 0/254 (0%) Strand=Plus/Minus Query 41205 GATCCAGAAATCCGTTACATGCCAAGCGGCGGCGCGGTTGCTAATCTAAGCATCGCCACA 41264 ||||| ||| | ||||| ||||| | || ||||| | ||| | | | || || Sbjct 283 GATCCTGAAGTTCGTTATATGCCTAATGGTAATGCGGTAGTGAATATGACATTAGCAACT 224 Query 41265 ACTGAAAGCTGGAAGGATAAAACCACCGGCGAGAAGAAAGAACAAACGGAATGGCACCGC 41324 | |||| ||||| ||||||| || || || || |||||| |||| |||||||| | Sbjct 223 TCAGAAAATTGGAAAGATAAAAATACTGGAGAAAATAAAGAAAAAACTGAATGGCATAGA 164 Query 41325 GTTGTCATCTTCGGTAAGCTGGCAGAAATTGCTAGCGAATACCTGCGCAAAGGTAGCAAG 41384 | || | || ||||| | || |||||||| ||||||| || || |||||| | Sbjct 163 ATAGTTTTATTTGGTAAATTAGCTGAAATTGCAGGCGAATATCTTCGAAAAGGTTCTCAA 104 Query 41385 GTGTTCATTGAAGGCAGCCTGCGAACGCGTAAATGGCAGGACCAGGCTGGCGTTGATCGC 41444 || | |||||||| ||| ||| | ||||||||||| || ||| | || ||| Sbjct 103 GTATATATTGAAGGATCATTGCAAACTAGAAAATGGCAGGATCAAAATGGTTTAGAACGC 44 Query 41445 TACACCACTGAAAT 41458 ||||| || ||||| Sbjct 43 TACACTACAGAAAT 30 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 132786881647008