Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Arabis_20nordmanniana_20[genbank_20GCA_5F001484925.1_202016-01-04] 267,228 sequences; 342,306,570 total letters Query= NC_028091.1 Length=196300 Score E Sequences producing significant alignments: (Bits) Value seq119666 127 3e-24 seq251147 118 1e-21 seq99228 118 1e-21 seq90345 116 5e-21 seq229172 107 2e-18 seq248505 96.9 4e-15 seq146431 95.1 2e-14 seq27195 89.7 6e-13 seq191921 87.8 2e-12 seq204151 82.4 1e-10 >seq119666 Length=8982 Score = 127 bits (140), Expect = 3e-24 Identities = 299/448 (67%), Gaps = 10/448 (2%) Strand=Plus/Plus Query 11450 CGATCAAAACGACCCGGGCGAAGGAGGGCGTCATCAAGGATATCCACGCGATTAGTGGCC 11509 || |||||||| || || | || | ||| ||||| || || | | || || || Sbjct 2036 CGGTCAAAACGTCCTGGTCTCAGCAAAGCGGAGTCAAGAATGTCTGCTCTGTTGGTTGCA 2095 Query 11510 GCAATAACCACAATGCCAGTCTCATTGTCAAAGCCATCCATCTCGGTGAGTAATTGATTA 11569 |||| || | || ||||| | | ||||| ||||||||||| || | | |||||| Sbjct 2096 GCAACTACGATAACACCAGTGTTACCCTCAAAACCATCCATCTCAGTCAAGAGCTGATTA 2155 Query 11570 ATTGTTTGTTCTCTCTCATCATTTGCTGGCATACCA---CCAGCACTGCGTTGCTTGCCC 11626 | || |||||||| |||||||| || |||| || | | | |||| | || Sbjct 2156 AGAGTCTGTTCTCTTTCATCATTACCTCC---ACCAATTCCGGTTCCTCTTTGCCTACCA 2212 Query 11627 ACCGCATCAATCTCATCAATGAAGACAATACATGGTTGATTTTCGCGGGCGATTTCAAAG 11686 || ||||| || ||||||| || ||||| || || |||||| ||| ||| || Sbjct 2213 ACAGCATCTATTTCATCAACAAAAACAATGCAGGGCGCATTTTCCTTGGCTTTTTTGAAA 2272 Query 11687 AGATCGCGAACCCTTTTGGCACCCACACCAACAAACATCTCCACAAAGTTTGCGGCAGAG 11746 ||||| || |||||| |||||| ||||| || |||||||||||||| | | | ||| Sbjct 2273 AGATCACGCACCCTTGAGGCACCAACACCGACGAACATCTCCACAAACTCAGAACCCGAG 2332 Query 11747 CACTGG--ATGAATGGGACATTTGATTCACCCGCGATGGCTCGGGCGAGGAGGGTCTTTC 11804 ||| | ||| || ||| | |||||| || |||||| || | ||||| || | Sbjct 2333 --ATGGAAAAGAAGGGTACACCGGCTTCACCAGCAATGGCTTTTGCCAACAGGGTTTTAC 2390 Query 11805 CCGTACCTGGCTTACCCGCGAGAAGGGCGCCTCGGGGGATCTTGGCACCACTTCCAAAAT 11864 | ||||| || ||| || || | ||| |||||| ||||||| || Sbjct 2391 CAGTACCAGGAGGACCAATAAGGAGAACACCTTTCGGGATCCGGGCACCAACCGCAGTGA 2450 Query 11865 ATCTCTCGGGTTGCTTGAGAAAATCCAC 11892 ||||||| || | ||| ||||| ||||| Sbjct 2451 ATCTCTCAGGCTTCTTCAGAAACTCCAC 2478 >seq251147 Length=238287 Score = 118 bits (130), Expect = 1e-21 Identities = 262/388 (68%), Gaps = 4/388 (1%) Strand=Plus/Minus Query 11429 GGAAGACCCACTTGGATCTTG-CGATCAAAACGACCCGGGCGAAGGAGGGCGTCATCAAG 11487 || || |||||||| | |||| ||||| |||||||| ||||| | || || | |||||| Sbjct 146674 GGCAGCCCCACTTGTA-CTTGACGATCGAAACGACCTGGGCGTAATAGCGCTTTATCAAG 146616 Query 11488 GATATCCACGCGATTAGTGGCCGCAATAACCACAATGCCAGTCTCATTGTCAAAGCCATC 11547 | || | || || || || ||||| | | || ||| | | ||||| || || Sbjct 146615 TACGTCTGCACGGTTGGTCGCAGCAATGATAATAACGCCTTCGTTACCTTCAAAACCGTC 146556 Query 11548 CATCTCGGTGAGTAATTGATTAATTGTTTGTTCTCTCTCATCATTTGCTG-GCATACCAC 11606 |||||| | ||| || || | ||||| || | ||||||||| | || | | Sbjct 146555 CATCTCAACCAATAACTGGTTTAGAGTTTGCTCACGCTCATCATTACCACCGCCTGTT-C 146497 Query 11607 CAGCACTGCGTTGCTTGCCCACCGCATCAATCTCATCAATGAAGACAATACATGGTTGAT 11666 ||| || || || || || |||||||||||||| ||||||| |||||| ||| | Sbjct 146496 CAGAACCACGATGACGACCAACTGCATCAATCTCATCGATGAAGATAATACAAGGTGCAC 146437 Query 11667 TTTCGCGGGCGATTTCAAAGAGATCGCGAACCCTTTTGGCACCCACACCAACAAACATCT 11726 ||| || |||||| | ||| || || | | |||||||||||||||||||| | Sbjct 146436 TTTTCTTCGCCTGTTCAAACATATCACGTACACGTGAAGCACCCACACCAACAAACATTT 146377 Query 11727 CCACAAAGTTTGCGGCAGAGCACTGGATGAATGGGACATTTGATTCACCCGCGATGGCTC 11786 | || || | | | || | | ||| || || || | |||||| || ||||||| Sbjct 146376 CTACGAAATCAGAACCTGAAATCGAAAAGAACGGTACTTTGGCTTCACCAGCAATGGCTC 146317 Query 11787 GGGCGAGGAGGGTCTTTCCCGTACCTGG 11814 ||| | || || || || |||||||| Sbjct 146316 TGGCCAATAGCGTTTTACCAGTACCTGG 146289 >seq99228 Length=25189 Score = 118 bits (130), Expect = 1e-21 Identities = 297/448 (66%), Gaps = 10/448 (2%) Strand=Plus/Minus Query 11450 CGATCAAAACGACCCGGGCGAAGGAGGGCGTCATCAAGGATATCCACGCGATTAGTGGCC 11509 || |||||||| || || | || | || ||||| || || | | || || || Sbjct 21529 CGGTCAAAACGTCCTGGTCTCAGCAAAGCAGAGTCAAGAATGTCTGCTCTGTTGGTTGCA 21470 Query 11510 GCAATAACCACAATGCCAGTCTCATTGTCAAAGCCATCCATCTCGGTGAGTAATTGATTA 11569 |||| || | || ||||| | | ||||| ||||||||||| || || | |||||| Sbjct 21469 GCAACTACGATAACACCAGTGTTACCCTCAAAACCATCCATCTCAGTAAGGAGCTGATTA 21410 Query 11570 ATTGTTTGTTCTCTCTCATCATTTGCTGGCATACCA---CCAGCACTGCGTTGCTTGCCC 11626 | || |||||||| |||||||| || |||| || | | | |||| | || Sbjct 21409 AGAGTCTGTTCTCTTTCATCATTACCTCC---ACCAATTCCGGTTCCTCTTTGCCTACCA 21353 Query 11627 ACCGCATCAATCTCATCAATGAAGACAATACATGGTTGATTTTCGCGGGCGATTTCAAAG 11686 || ||||| || ||||||| || ||||| || || |||||| ||| ||| || Sbjct 21352 ACAGCATCTATTTCATCAACAAAAACAATGCAGGGAGCATTTTCCTTGGCCTTTTTGAAA 21293 Query 11687 AGATCGCGAACCCTTTTGGCACCCACACCAACAAACATCTCCACAAAGTTTGCGGCAGAG 11746 ||||| || |||||| |||||| ||||| ||||||||||| ||||| | | | ||| Sbjct 21292 AGATCACGCACCCTTGAGGCACCAACACCGACAAACATCTCAACAAACTCAGAACCCGAG 21233 Query 11747 CACTGG--ATGAATGGGACATTTGATTCACCCGCGATGGCTCGGGCGAGGAGGGTCTTTC 11804 ||| | ||| || ||| | |||||| || || ||| || | | ||| || | Sbjct 21232 --ATGGAAAAGAAGGGTACACCAGCTTCACCAGCAATAGCTTTTGCCAATAAGGTTTTAC 21175 Query 11805 CCGTACCTGGCTTACCCGCGAGAAGGGCGCCTCGGGGGATCTTGGCACCACTTCCAAAAT 11864 | ||||| || ||| | || || | ||| |||||| ||||||| || Sbjct 21174 CAGTACCAGGAGGACCAACAAGGAGAACACCTTTTGGGATCCGGGCACCAACAGCAGTGA 21115 Query 11865 ATCTCTCGGGTTGCTTGAGAAAATCCAC 11892 | ||||| || | ||| ||||| ||||| Sbjct 21114 ACCTCTCAGGCTTCTTCAGAAACTCCAC 21087 >seq90345 Length=8683 Score = 116 bits (128), Expect = 5e-21 Identities = 196/281 (70%), Gaps = 12/281 (4%) Strand=Plus/Minus Query 11540 AAGCCATCCATCTCGGTGAGTAATTGATTAATTGTTTGTTCTCTCTCATCATTTGCTGGC 11599 || ||||||||||| || | | ||||| || || |||||||||||||||||| | | Sbjct 4950 AAACCATCCATCTCAGTCAAGAGCTGATTGATCGTCTGTTCTCTCTCATCATTTCCA--C 4893 Query 11600 ATACCA--CCAGCACTGCGTTGCTTGCCCACCGCATCAATCTCATCAATGAAGACAATAC 11657 | ||| ||||| | | ||| | || || |||||||||||||||||||||||||||| Sbjct 4892 CTCCCATACCAGCTCCTCTCTGCCTACCAACAGCATCAATCTCATCAATGAAGACAATAC 4833 Query 11658 ATGG----TTGATTTTCGCGGGCGATTTCAAAGAGATCGCGAACCCTTTTGGCACCCACA 11713 | || ||| |||| || | ||||| | ||| | |||||| ||||| ||| Sbjct 4832 AAGGTGCATTGGATTTC----GCCTTGTCAAACAAATCCCTAACCCTAGAAGCACCAACA 4777 Query 11714 CCAACAAACATCTCCACAAAGTTTGCGGCAGAGCACTGGATGAATGGGACATTTGATTCA 11773 || || || | |||||| || | | |||| ||| || ||| || || || ||| Sbjct 4776 CCGACGAAAAGCTCCACGAACTCCGACGCAGCGCAAGAGAAGAAAGGCACTCCTGCTTCT 4717 Query 11774 CCCGCGATGGCTCGGGCGAGGAGGGTCTTTCCCGTACCTGG 11814 || || | |||| || | || ||||| ||||| || || Sbjct 4716 CCAGCCACAGCTCTAGCCAAAAGAGTCTTCCCCGTCCCCGG 4676 >seq229172 Length=5357 Score = 107 bits (118), Expect = 2e-18 Identities = 194/280 (69%), Gaps = 8/280 (3%) Strand=Plus/Plus Query 11539 AAAGCCATCCATCTCGGTGAGTAATTGATTAATTGTTTGTTCTCTCTCATCATTTGCTGG 11598 ||| ||||||||||| || | | |||||||| || |||||||||||||||||| | Sbjct 4802 AAACCCATCCATCTCAGTCAAGAGCTGATTAATGGTCTGTTCTCTCTCATCATTTCC--A 4859 Query 11599 CATACC--ACCAGCACTGCGTTGCTTGCCCACCGCATCAATCTCATCAATGAAGACAATA 11656 | | || |||||| | | ||| | || || |||||||||||||||||||| |||||| Sbjct 4860 CCTCCCATACCAGCGCCTCTCTGCCTACCAACAGCATCAATCTCATCAATGAAAACAATA 4919 Query 11657 CATGGTTGATTTTCG--CGGGCGATTTCAAAGAGATCGCGAACCCTTTTGGCACCCACAC 11714 || ||| ||||| || | ||||| | ||| | ||| || ||||| |||| Sbjct 4920 CAAGGT--GCTTTCGATTTCGCCTTCTCAAACAAATCCCTAACTCTAGAAGCACCAACAC 4977 Query 11715 CAACAAACATCTCCACAAAGTTTGCGGCAGAGCACTGGATGAATGGGACATTTGATTCAC 11774 | || || | |||||| || | | |||| ||| || ||| || || || || | Sbjct 4978 CGACGAAAAGCTCCACGAACTCAGACGCAGCGCAAGAGAAGAAAGGCACTCCTGCCTCTC 5037 Query 11775 CCGCGATGGCTCGGGCGAGGAGGGTCTTTCCCGTACCTGG 11814 | || | |||| || | || ||||| ||||| || || Sbjct 5038 CGGCCACAGCTCTAGCCAAAAGCGTCTTCCCCGTTCCCGG 5077 >seq248505 Length=7796 Score = 96.9 bits (106), Expect = 4e-15 Identities = 198/291 (68%), Gaps = 10/291 (3%) Strand=Plus/Plus Query 11450 CGATCAAAACGACCCGGGCGAAGGAGGGCGTCATCAAGGATATCCACGCGATTAGTGGCC 11509 || ||||||||||| || || || | || || | ||||||| | || || || || Sbjct 4771 CGGTCAAAACGACCTGGACGGAGTAAAGCCGGGTCCAAGATATCCGCACGGTTTGTTGCT 4830 Query 11510 GCAATAACCACAATGCCAGTCTCATTGTCA---AAGCCATCCATCTCGGTGAGTAATTGA 11566 || || | | || || || || ||| || ||||||||||| || | ||| Sbjct 4831 GCGATCATGATGATACCT---TCGTTTTCACTGAATCCATCCATCTCAACAAGAAGTTGG 4887 Query 11567 TTAATTGTTTGTTCTCTCTCATCATTT--GCTGGCATACCACCAGCACTGCGTTGCTTGC 11624 || | ||||||||| | |||||||| | || | || ||| || | ||||| | Sbjct 4888 TTCAATGTTTGTTCGCGCTCATCATGTCCGCCGCCAAG--ACCGGCTCCACGTTGACGAC 4945 Query 11625 CCACCGCATCAATCTCATCAATGAAGACAATACATGGTTGATTTTCGCGGGCGATTTCAA 11684 | ||||||||||||||||| ||||||| |||||||| |||| || |||||| Sbjct 4946 CAACCGCATCAATCTCATCGATGAAGATGATACATGGGGCGTTTTTCTTCGCATTTTCAA 5005 Query 11685 AGAGATCGCGAACCCTTTTGGCACCCACACCAACAAACATCTCCACAAAGT 11735 | | || || || | | ||||| ||||| ||||||||||| || |||| Sbjct 5006 ACAAGTCACGTACACGTGATGCACCGACACCGACAAACATCTCAACGAAGT 5056 >seq146431 Length=15796 Score = 95.1 bits (104), Expect = 2e-14 Identities = 152/218 (70%), Gaps = 3/218 (1%) Strand=Plus/Plus Query 122670 GTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGACCTGGCATGAGACC 122729 ||| | ||| || ||||| || || | ||| || |||||| || || |||||||| || Sbjct 4142 GTGTAAACCTTCGTCTCGTGAGATCAATTCGTTAGAGAAGGTTAATCCAGGCATGAGTCC 4201 Query 122730 CCGCTTCTTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGATACCCTCCACACA 122789 || ||||| | ||| |||| | ||||| || |||||||||||||| || ||||| Sbjct 4202 ACGTTTCTTAAGCCAGAAAATCGAACAGAAGCTACCTGAGAAGAAGATACCTTCAACACA 4261 Query 122790 CGCAAACGCAAAAAGGCGTTCGGCGAAGGAGCGAGACTTTGCATCAAACCATTTCATTGC 122849 || || || | | ||||| || || | |||| | |||| | ||| |||| || Sbjct 4262 AGCGAAAGCTACGATTCGTTCAGCAAAAGTTTGAGA---TCCATCGATCCAAGTCATAGC 4318 Query 122850 CCATTTCGCCTTCTTCTCAATACATGGTACAGTTTGGA 122887 ||||| || ||||| ||| ||| || | |||| || Sbjct 4319 CCATTGAGCTTTCTTAGCAACACAAGGAATTGTTTCGA 4356 >seq27195 Length=13093 Score = 89.7 bits (98), Expect = 6e-13 Identities = 133/188 (71%), Gaps = 3/188 (2%) Strand=Plus/Minus Query 122677 CCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGACCTGGCATGAGACCCCGCTTC 122736 || || ||||| || || | || |||||||| || || |||||||| || || || Sbjct 9210 CCTTCGTCTCGTGAGATTAACTCGTTTGAGAAAGTTAACCCAGGCATGAGCCCTCGTTTT 9151 Query 122737 TTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGATACCCTCCACACACGCAAAC 122796 || | ||| |||| | ||||| ||||||||||||||||| || || ||||| || Sbjct 9150 TTGAGCCAGAAAATCGAACAGAAGCTACCGGAGAAGAAGATACCTTCGACGCACGCGAAA 9091 Query 122797 GCAAAAAGGCGTTCGGCGAAGGAGCGAGACTTTGCATCAAACCATTTCATTGCCCATTTC 122856 || | | ||||| ||||| | |||| | |||| | |||| |||| ||||||| Sbjct 9090 GCGACGATTCGTTCAGCGAAAGTCTGAGA---TCCATCGATCCATGTCATAGCCCATTGA 9034 Query 122857 GCCTTCTT 122864 || ||||| Sbjct 9033 GCTTTCTT 9026 >seq191921 Length=6033 Score = 87.8 bits (96), Expect = 2e-12 Identities = 93/123 (76%), Gaps = 0/123 (0%) Strand=Plus/Plus Query 111044 ATAAATACATCCGCGAGACCTTGAACACCCAAACCAATAGGTCTGTGTCGCATATTAGAC 111103 |||||| |||| || |||||||| ||||| | |||||||||||| |||||||| || ||| Sbjct 2812 ATAAATGCATCTGCAAGACCTTGCACACCAATACCAATAGGTCTATGTCGCATGTTTGAC 2871 Query 111104 TTTCGCGCAGTCTCAACGGGATAAAAATTTCTGTCAATGACTCGGTTTAGATTTTTGGTA 111163 || |||||||| || ||||| |||| || || | ||| ||||| ||||| Sbjct 2872 GTTTTTGCAGTCTCCACAGGATAGTAATTCACATCTATAATCTTGTTGAGATTGATGGTA 2931 Query 111164 ACA 111166 ||| Sbjct 2932 ACA 2934 >seq204151 Length=272 Score = 82.4 bits (90), Expect = 1e-10 Identities = 137/198 (69%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 11617 TTGCTTGCCCACCGCATCAATCTCATCAATGAAGACAATACATGGTTGATTTTCGCGGGC 11676 |||| | || || |||||||| ||||| | |||||||| || || ||||| ||| Sbjct 240 TTGCCTACCAACAGCATCAATTTCATCTACAAAGACAATGCAGGGAGCGTTTTCCTTGGC 181 Query 11677 GATTTCAAAGAGATCGCGAACCCTTTTGGCACCCACACCAACAAACATCTCCACAAAGTT 11736 | | || |||||||| || ||| |||||| ||||| ||||||||||| ||||| | Sbjct 180 TTTCTTGAAAAGATCGCGGACTCTTGAGGCACCAACACCGACAAACATCTCAACAAACTC 121 Query 11737 TGCGGCAGAGCACTGGATGAATGGGACATTTGATTCACCCGCGATGGCTCGGGCGAGGAG 11796 | ||||| || ||| || ||| | |||||| || || ||| || | || Sbjct 120 AGAACCAGAGATGGAGAAGAAAGGCACACCAGCTTCACCAGCAATAGCTTTTGCCAAAAG 61 Query 11797 GGTCTTTCCCGTACCTGG 11814 ||| || || ||||| || Sbjct 60 GGTTTTCCCGGTACCAGG 43 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 625934153308800