Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Arabis_20nordmanniana_20[genbank_20GCA_5F001484925.1_202016-01-04] 267,228 sequences; 342,306,570 total letters Query= NC_028092.1 Length=193301 Score E Sequences producing significant alignments: (Bits) Value seq248505 127 3e-24 seq251147 107 2e-18 seq146431 98.7 1e-15 seq229172 93.3 5e-14 seq90345 89.7 6e-13 seq27195 82.4 9e-11 >seq248505 Length=7796 Score = 127 bits (140), Expect = 3e-24 Identities = 299/442 (68%), Gaps = 17/442 (4%) Strand=Plus/Plus Query 14051 ACGGTGATCTTACGATCAAAGCGACCTGGGCGGAGGAGGGCGTCGTCAAGGATATCAATG 14110 || ||||| | ||| ||||| |||||||| ||||| | || ||| | |||||| Sbjct 4759 ACCGTGATTTGACGGTCAAAACGACCTGGACGGAGTAAAGCCGGGTCCAAGATATCCGCA 4818 Query 14111 CGGTTCGTCGCCGCGATGACAACGATGCCCGTCTCGTTATCA---AAGCCATCCATCTCA 14167 ||||| || || ||||| | | ||| || ||||| ||| || |||||||||||| Sbjct 4819 CGGTTTGTTGCTGCGATCATGATGATACCT---TCGTTTTCACTGAATCCATCCATCTCA 4875 Query 14168 GTCAAG-AGTTGATTGATGGTTTGTTCGCGTTCATCA--TTCGCAGGCATACCACCCGCA 14224 |||| ||||| || | ||||||||||| |||||| | ||| | | | ||| || Sbjct 4876 -ACAAGAAGTTGGTTCAATGTTTGTTCGCGCTCATCATGTCCGCCGCC--AAGACCGGCT 4932 Query 14225 CTGCGTTGCTTACCGACGGCGTCAATTTCATCGATGAAAACGATACATGGTTGATTTTCA 14284 | ||||| ||| || || ||||| ||||||||||| | ||||||||| |||| Sbjct 4933 CCACGTTGACGACCAACCGCATCAATCTCATCGATGAAGATGATACATGGGGCGTTTTTC 4992 Query 14285 CGGGCAACTTCAAAGATATCTCGCACTCTCTTGGCACCGACACCCACAAACATCTCCACA 14344 ||| |||||| | || || || | ||||||||||| ||||||||||| || Sbjct 4993 TTCGCATTTTCAAACAAGTCACGTACACGTGATGCACCGACACCGACAAACATCTCAACG 5052 Query 14345 AAATTGGCGGCGGAACATTG-GATGAAGGGGACGTTAGATTCACCCGCGATGGCTCGGGC 14403 || | | | ||| || | || ||| || ||| | |||||| || || ||||| Sbjct 5053 AAGTCAGAACCTGAA-ATCGAGAAGAACGGTACGCCGGCTTCACCAGCTGCTGCACGGGC 5111 Query 14404 GAGGAGGGTCTTCCCCGTCCCTGGTTTCCCTGCGAGAAGGGCACCACGTGGGATCCTGGC 14463 || | || || || || ||||| ||| | || ||| |||| || || | ||| Sbjct 5112 AAGCAATGTTTTACCTGTACCTGGAGGACCTACAAGGAGGACACCTTTAGGAATACGGGC 5171 Query 14464 ACC---ACTGCCAAAGTAGCGT 14482 ||| || | |||| | |||| Sbjct 5172 ACCGAGACGGGCAAACTTGCGT 5193 >seq251147 Length=238287 Score = 107 bits (118), Expect = 2e-18 Identities = 251/372 (67%), Gaps = 10/372 (3%) Strand=Plus/Minus Query 14062 ACGATCAAAGCGACCTGGGCGGAGGAGGGCGTCGTCAAGGATATCAATGCGGTTCGTCGC 14121 |||||| || ||||||||||| | || || | ||||| | || ||||| ||||| Sbjct 146654 ACGATCGAAACGACCTGGGCGTAATAGCGCTTTATCAAGTACGTCTGCACGGTTGGTCGC 146595 Query 14122 CGCGATGACAACGATGCCCGTCTCGTTA---TCAAAGCCATCCATCTCAGTCAAGAGTTG 14178 || |||| || | ||| |||||| ||||| || ||||||||| ||| | || Sbjct 146594 AGCAATGATAATAACGCCT---TCGTTACCTTCAAAACCGTCCATCTCAACCAATAACTG 146538 Query 14179 ATTGATGGTTTGTTCGCGTTCATCATTCGCAG-GCATACCACCCGCACTGCGTTGCTTAC 14237 || | ||||| || || |||||||| || || | || | || || || || Sbjct 146537 GTTTAGAGTTTGCTCACGCTCATCATTACCACCGCCTGTT-CCAGAACCACGATGACGAC 146479 Query 14238 CGACGGCGTCAATTTCATCGATGAAAACGATACATGGTTGATTTTCACGGGCAACTTCAA 14297 | || || ||||| ||||||||||| | ||||| ||| | ||| || ||||| Sbjct 146478 CAACTGCATCAATCTCATCGATGAAGATAATACAAGGTGCACTTTTCTTCGCCTGTTCAA 146419 Query 14298 AGATATCTCGCACTCTCTTGGCACCGACACCCACAAACATCTCCACAAAATTGGCGGCGG 14357 | ||||| || || | ||||| ||||| |||||||| || || |||| | | | Sbjct 146418 ACATATCACGTACACGTGAAGCACCCACACCAACAAACATTTCTACGAAATCAGAACCTG 146359 Query 14358 AACATTG-GATGAAGGGGACGTTAGATTCACCCGCGATGGCTCGGGCGAGGAGGGTCTTC 14416 || || | | ||| || || || | |||||| || ||||||| ||| | || || || Sbjct 146358 AA-ATCGAAAAGAACGGTACTTTGGCTTCACCAGCAATGGCTCTGGCCAATAGCGTTTTA 146300 Query 14417 CCCGTCCCTGGT 14428 || || |||||| Sbjct 146299 CCAGTACCTGGT 146288 >seq146431 Length=15796 Score = 98.7 bits (108), Expect = 1e-15 Identities = 110/147 (75%), Gaps = 0/147 (0%) Strand=Plus/Plus Query 130027 GTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCATGAGACC 130086 ||| | ||| ||||| || ||||| | ||| || |||||| | || |||||||| || Sbjct 4142 GTGTAAACCTTCGTCTCGTGAGATCAATTCGTTAGAGAAGGTTAATCCAGGCATGAGTCC 4201 Query 130087 CCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCTCCACACA 130146 || ||||| | ||||||||||| ||| || || ||||||||||| || || ||||| Sbjct 4202 ACGTTTCTTAAGCCAGAAAATCGAACAGAAGCTACCTGAGAAGAAGATACCTTCAACACA 4261 Query 130147 CGCGAACGCAAAGAGACGCTCAGCAAA 130173 ||||| || | || || |||||||| Sbjct 4262 AGCGAAAGCTACGATTCGTTCAGCAAA 4288 >seq229172 Length=5357 Score = 93.3 bits (102), Expect = 5e-14 Identities = 142/198 (72%), Gaps = 6/198 (3%) Strand=Plus/Plus Query 14152 AAAGCCATCCATCTCAGTCAAGAGTTGATTGATGGTTTGTTCGCGTTCATCATTCGCAGG 14211 ||| |||||||||||||||||||| ||||| ||||| ||||| | |||||||| || Sbjct 4802 AAACCCATCCATCTCAGTCAAGAGCTGATTAATGGTCTGTTCTCTCTCATCATTTCCA-- 4859 Query 14212 CATACC--ACCCGCACTGCGTTGCTTACCGACGGCGTCAATTTCATCGATGAAAACGATA 14269 | | || ||| || | | ||| |||| || || ||||| ||||| |||||||| ||| Sbjct 4860 CCTCCCATACCAGCGCCTCTCTGCCTACCAACAGCATCAATCTCATCAATGAAAACAATA 4919 Query 14270 CATGGTTGATTTTCA-CGGGCAACTTCAAAGATATCTCGCACTCTCTTGGCACCGACACC 14328 || || || ||| | || ||||| | ||| | ||||| ||||| ||||| Sbjct 4920 CAAGG-TGCTTTCGATTTCGCCTTCTCAAACAAATCCCTAACTCTAGAAGCACCAACACC 4978 Query 14329 CACAAACATCTCCACAAA 14346 || || | |||||| || Sbjct 4979 GACGAAAAGCTCCACGAA 4996 >seq90345 Length=8683 Score = 89.7 bits (98), Expect = 6e-13 Identities = 190/281 (68%), Gaps = 12/281 (4%) Strand=Plus/Minus Query 14153 AAGCCATCCATCTCAGTCAAGAGTTGATTGATGGTTTGTTCGCGTTCATCATTCGCAGGC 14212 || |||||||||||||||||||| |||||||| || ||||| | |||||||| || | Sbjct 4950 AAACCATCCATCTCAGTCAAGAGCTGATTGATCGTCTGTTCTCTCTCATCATTTCCA--C 4893 Query 14213 ATACC--ACCCGCACTGCGTTGCTTACCGACGGCGTCAATTTCATCGATGAAAACGATAC 14270 | || ||| || | | ||| |||| || || ||||| ||||| ||||| || |||| Sbjct 4892 CTCCCATACCAGCTCCTCTCTGCCTACCAACAGCATCAATCTCATCAATGAAGACAATAC 4833 Query 14271 ATGG----TTGATTTTCACGGGCAACTTCAAAGATATCTCGCACTCTCTTGGCACCGACA 14326 | || ||| |||| || ||||| | ||| | || || ||||| ||| Sbjct 4832 AAGGTGCATTGGATTTC----GCCTTGTCAAACAAATCCCTAACCCTAGAAGCACCAACA 4777 Query 14327 CCCACAAACATCTCCACAAAATTGGCGGCGGAACATTGGATGAAGGGGACGTTAGATTCA 14386 || || || | |||||| || | | || | || || ||| || || | ||| Sbjct 4776 CCGACGAAAAGCTCCACGAACTCCGACGCAGCGCAAGAGAAGAAAGGCACTCCTGCTTCT 4717 Query 14387 CCCGCGATGGCTCGGGCGAGGAGGGTCTTCCCCGTCCCTGG 14427 || || | |||| || | || |||||||||||||| || Sbjct 4716 CCAGCCACAGCTCTAGCCAAAAGAGTCTTCCCCGTCCCCGG 4676 >seq27195 Length=13093 Score = 82.4 bits (90), Expect = 9e-11 Identities = 178/262 (68%), Gaps = 7/262 (3%) Strand=Plus/Minus Query 130034 CCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCATGAGACCCCGCTTC 130093 || ||||| || ||||| | || || ||||| | || |||||||| || || || Sbjct 9210 CCTTCGTCTCGTGAGATTAACTCGTTTGAGAAAGTTAACCCAGGCATGAGCCCTCGTTTT 9151 Query 130094 TTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCTCCACACACGCGAAC 130153 || | ||||||||||| ||| || || ||||||||||| || || || |||||||| Sbjct 9150 TTGAGCCAGAAAATCGAACAGAAGCTACCGGAGAAGAAGATACCTTCGACGCACGCGAAA 9091 Query 130154 GCAAAGAGACGCTCAGCAAAGGAGCGGGACTTTGTATCAAACCACTTCATCGCCCACTGC 130213 || | || || ||||| || | | || | ||| | ||| |||| ||||| || Sbjct 9090 GCGACGATTCGTTCAGCGAAAGTCTGAGA---TCCATCGATCCATGTCATAGCCCATTGA 9034 Query 130214 GCCTTTTTCTCGATACACGGGACGGTCTGGATCGCTTCAAAGAGTTCCT-TCT-TTTCTG 130271 || || || ||| || |||| || | ||| || ||||| | | ||| | | || Sbjct 9033 GCTTTCTTAGCGACGCAAGGGATTGTTTCGATTGCGCGGAAGAGATGATCTCTCTCTTTG 8974 Query 130272 ATGGATCTTTGATGTACTTATC 130293 | |||||||||||| |||| Sbjct 8973 TT--ATCTTTGATGTATGTATC 8954 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 616369409979680