Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Arabis_20nordmanniana_20[genbank_20GCA_5F001484925.1_202016-01-04]
267,228 sequences; 342,306,570 total letters
Query= NC_028092.1
Length=193301
Score E
Sequences producing significant alignments: (Bits) Value
seq248505 127 3e-24
seq251147 107 2e-18
seq146431 98.7 1e-15
seq229172 93.3 5e-14
seq90345 89.7 6e-13
seq27195 82.4 9e-11
>seq248505
Length=7796
Score = 127 bits (140), Expect = 3e-24
Identities = 299/442 (68%), Gaps = 17/442 (4%)
Strand=Plus/Plus
Query 14051 ACGGTGATCTTACGATCAAAGCGACCTGGGCGGAGGAGGGCGTCGTCAAGGATATCAATG 14110
|| ||||| | ||| ||||| |||||||| ||||| | || ||| | ||||||
Sbjct 4759 ACCGTGATTTGACGGTCAAAACGACCTGGACGGAGTAAAGCCGGGTCCAAGATATCCGCA 4818
Query 14111 CGGTTCGTCGCCGCGATGACAACGATGCCCGTCTCGTTATCA---AAGCCATCCATCTCA 14167
||||| || || ||||| | | ||| || ||||| ||| || ||||||||||||
Sbjct 4819 CGGTTTGTTGCTGCGATCATGATGATACCT---TCGTTTTCACTGAATCCATCCATCTCA 4875
Query 14168 GTCAAG-AGTTGATTGATGGTTTGTTCGCGTTCATCA--TTCGCAGGCATACCACCCGCA 14224
|||| ||||| || | ||||||||||| |||||| | ||| | | | ||| ||
Sbjct 4876 -ACAAGAAGTTGGTTCAATGTTTGTTCGCGCTCATCATGTCCGCCGCC--AAGACCGGCT 4932
Query 14225 CTGCGTTGCTTACCGACGGCGTCAATTTCATCGATGAAAACGATACATGGTTGATTTTCA 14284
| ||||| ||| || || ||||| ||||||||||| | ||||||||| ||||
Sbjct 4933 CCACGTTGACGACCAACCGCATCAATCTCATCGATGAAGATGATACATGGGGCGTTTTTC 4992
Query 14285 CGGGCAACTTCAAAGATATCTCGCACTCTCTTGGCACCGACACCCACAAACATCTCCACA 14344
||| |||||| | || || || | ||||||||||| ||||||||||| ||
Sbjct 4993 TTCGCATTTTCAAACAAGTCACGTACACGTGATGCACCGACACCGACAAACATCTCAACG 5052
Query 14345 AAATTGGCGGCGGAACATTG-GATGAAGGGGACGTTAGATTCACCCGCGATGGCTCGGGC 14403
|| | | | ||| || | || ||| || ||| | |||||| || || |||||
Sbjct 5053 AAGTCAGAACCTGAA-ATCGAGAAGAACGGTACGCCGGCTTCACCAGCTGCTGCACGGGC 5111
Query 14404 GAGGAGGGTCTTCCCCGTCCCTGGTTTCCCTGCGAGAAGGGCACCACGTGGGATCCTGGC 14463
|| | || || || || ||||| ||| | || ||| |||| || || | |||
Sbjct 5112 AAGCAATGTTTTACCTGTACCTGGAGGACCTACAAGGAGGACACCTTTAGGAATACGGGC 5171
Query 14464 ACC---ACTGCCAAAGTAGCGT 14482
||| || | |||| | ||||
Sbjct 5172 ACCGAGACGGGCAAACTTGCGT 5193
>seq251147
Length=238287
Score = 107 bits (118), Expect = 2e-18
Identities = 251/372 (67%), Gaps = 10/372 (3%)
Strand=Plus/Minus
Query 14062 ACGATCAAAGCGACCTGGGCGGAGGAGGGCGTCGTCAAGGATATCAATGCGGTTCGTCGC 14121
|||||| || ||||||||||| | || || | ||||| | || ||||| |||||
Sbjct 146654 ACGATCGAAACGACCTGGGCGTAATAGCGCTTTATCAAGTACGTCTGCACGGTTGGTCGC 146595
Query 14122 CGCGATGACAACGATGCCCGTCTCGTTA---TCAAAGCCATCCATCTCAGTCAAGAGTTG 14178
|| |||| || | ||| |||||| ||||| || ||||||||| ||| | ||
Sbjct 146594 AGCAATGATAATAACGCCT---TCGTTACCTTCAAAACCGTCCATCTCAACCAATAACTG 146538
Query 14179 ATTGATGGTTTGTTCGCGTTCATCATTCGCAG-GCATACCACCCGCACTGCGTTGCTTAC 14237
|| | ||||| || || |||||||| || || | || | || || || ||
Sbjct 146537 GTTTAGAGTTTGCTCACGCTCATCATTACCACCGCCTGTT-CCAGAACCACGATGACGAC 146479
Query 14238 CGACGGCGTCAATTTCATCGATGAAAACGATACATGGTTGATTTTCACGGGCAACTTCAA 14297
| || || ||||| ||||||||||| | ||||| ||| | ||| || |||||
Sbjct 146478 CAACTGCATCAATCTCATCGATGAAGATAATACAAGGTGCACTTTTCTTCGCCTGTTCAA 146419
Query 14298 AGATATCTCGCACTCTCTTGGCACCGACACCCACAAACATCTCCACAAAATTGGCGGCGG 14357
| ||||| || || | ||||| ||||| |||||||| || || |||| | | |
Sbjct 146418 ACATATCACGTACACGTGAAGCACCCACACCAACAAACATTTCTACGAAATCAGAACCTG 146359
Query 14358 AACATTG-GATGAAGGGGACGTTAGATTCACCCGCGATGGCTCGGGCGAGGAGGGTCTTC 14416
|| || | | ||| || || || | |||||| || ||||||| ||| | || || ||
Sbjct 146358 AA-ATCGAAAAGAACGGTACTTTGGCTTCACCAGCAATGGCTCTGGCCAATAGCGTTTTA 146300
Query 14417 CCCGTCCCTGGT 14428
|| || ||||||
Sbjct 146299 CCAGTACCTGGT 146288
>seq146431
Length=15796
Score = 98.7 bits (108), Expect = 1e-15
Identities = 110/147 (75%), Gaps = 0/147 (0%)
Strand=Plus/Plus
Query 130027 GTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCATGAGACC 130086
||| | ||| ||||| || ||||| | ||| || |||||| | || |||||||| ||
Sbjct 4142 GTGTAAACCTTCGTCTCGTGAGATCAATTCGTTAGAGAAGGTTAATCCAGGCATGAGTCC 4201
Query 130087 CCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCTCCACACA 130146
|| ||||| | ||||||||||| ||| || || ||||||||||| || || |||||
Sbjct 4202 ACGTTTCTTAAGCCAGAAAATCGAACAGAAGCTACCTGAGAAGAAGATACCTTCAACACA 4261
Query 130147 CGCGAACGCAAAGAGACGCTCAGCAAA 130173
||||| || | || || ||||||||
Sbjct 4262 AGCGAAAGCTACGATTCGTTCAGCAAA 4288
>seq229172
Length=5357
Score = 93.3 bits (102), Expect = 5e-14
Identities = 142/198 (72%), Gaps = 6/198 (3%)
Strand=Plus/Plus
Query 14152 AAAGCCATCCATCTCAGTCAAGAGTTGATTGATGGTTTGTTCGCGTTCATCATTCGCAGG 14211
||| |||||||||||||||||||| ||||| ||||| ||||| | |||||||| ||
Sbjct 4802 AAACCCATCCATCTCAGTCAAGAGCTGATTAATGGTCTGTTCTCTCTCATCATTTCCA-- 4859
Query 14212 CATACC--ACCCGCACTGCGTTGCTTACCGACGGCGTCAATTTCATCGATGAAAACGATA 14269
| | || ||| || | | ||| |||| || || ||||| ||||| |||||||| |||
Sbjct 4860 CCTCCCATACCAGCGCCTCTCTGCCTACCAACAGCATCAATCTCATCAATGAAAACAATA 4919
Query 14270 CATGGTTGATTTTCA-CGGGCAACTTCAAAGATATCTCGCACTCTCTTGGCACCGACACC 14328
|| || || ||| | || ||||| | ||| | ||||| ||||| |||||
Sbjct 4920 CAAGG-TGCTTTCGATTTCGCCTTCTCAAACAAATCCCTAACTCTAGAAGCACCAACACC 4978
Query 14329 CACAAACATCTCCACAAA 14346
|| || | |||||| ||
Sbjct 4979 GACGAAAAGCTCCACGAA 4996
>seq90345
Length=8683
Score = 89.7 bits (98), Expect = 6e-13
Identities = 190/281 (68%), Gaps = 12/281 (4%)
Strand=Plus/Minus
Query 14153 AAGCCATCCATCTCAGTCAAGAGTTGATTGATGGTTTGTTCGCGTTCATCATTCGCAGGC 14212
|| |||||||||||||||||||| |||||||| || ||||| | |||||||| || |
Sbjct 4950 AAACCATCCATCTCAGTCAAGAGCTGATTGATCGTCTGTTCTCTCTCATCATTTCCA--C 4893
Query 14213 ATACC--ACCCGCACTGCGTTGCTTACCGACGGCGTCAATTTCATCGATGAAAACGATAC 14270
| || ||| || | | ||| |||| || || ||||| ||||| ||||| || ||||
Sbjct 4892 CTCCCATACCAGCTCCTCTCTGCCTACCAACAGCATCAATCTCATCAATGAAGACAATAC 4833
Query 14271 ATGG----TTGATTTTCACGGGCAACTTCAAAGATATCTCGCACTCTCTTGGCACCGACA 14326
| || ||| |||| || ||||| | ||| | || || ||||| |||
Sbjct 4832 AAGGTGCATTGGATTTC----GCCTTGTCAAACAAATCCCTAACCCTAGAAGCACCAACA 4777
Query 14327 CCCACAAACATCTCCACAAAATTGGCGGCGGAACATTGGATGAAGGGGACGTTAGATTCA 14386
|| || || | |||||| || | | || | || || ||| || || | |||
Sbjct 4776 CCGACGAAAAGCTCCACGAACTCCGACGCAGCGCAAGAGAAGAAAGGCACTCCTGCTTCT 4717
Query 14387 CCCGCGATGGCTCGGGCGAGGAGGGTCTTCCCCGTCCCTGG 14427
|| || | |||| || | || |||||||||||||| ||
Sbjct 4716 CCAGCCACAGCTCTAGCCAAAAGAGTCTTCCCCGTCCCCGG 4676
>seq27195
Length=13093
Score = 82.4 bits (90), Expect = 9e-11
Identities = 178/262 (68%), Gaps = 7/262 (3%)
Strand=Plus/Minus
Query 130034 CCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCATGAGACCCCGCTTC 130093
|| ||||| || ||||| | || || ||||| | || |||||||| || || ||
Sbjct 9210 CCTTCGTCTCGTGAGATTAACTCGTTTGAGAAAGTTAACCCAGGCATGAGCCCTCGTTTT 9151
Query 130094 TTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCTCCACACACGCGAAC 130153
|| | ||||||||||| ||| || || ||||||||||| || || || ||||||||
Sbjct 9150 TTGAGCCAGAAAATCGAACAGAAGCTACCGGAGAAGAAGATACCTTCGACGCACGCGAAA 9091
Query 130154 GCAAAGAGACGCTCAGCAAAGGAGCGGGACTTTGTATCAAACCACTTCATCGCCCACTGC 130213
|| | || || ||||| || | | || | ||| | ||| |||| ||||| ||
Sbjct 9090 GCGACGATTCGTTCAGCGAAAGTCTGAGA---TCCATCGATCCATGTCATAGCCCATTGA 9034
Query 130214 GCCTTTTTCTCGATACACGGGACGGTCTGGATCGCTTCAAAGAGTTCCT-TCT-TTTCTG 130271
|| || || ||| || |||| || | ||| || ||||| | | ||| | | ||
Sbjct 9033 GCTTTCTTAGCGACGCAAGGGATTGTTTCGATTGCGCGGAAGAGATGATCTCTCTCTTTG 8974
Query 130272 ATGGATCTTTGATGTACTTATC 130293
| |||||||||||| ||||
Sbjct 8973 TT--ATCTTTGATGTATGTATC 8954
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 616369409979680
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |