Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Arabis_20nordmanniana_20[genbank_20GCA_5F001484925.1_202016-01-04] 267,228 sequences; 342,306,570 total letters Query= NC_028093.1 Length=182309 Score E Sequences producing significant alignments: (Bits) Value seq251147 145 9e-30 seq248505 129 7e-25 seq119666 129 7e-25 seq146431 122 1e-22 seq27195 122 1e-22 seq99228 116 4e-21 seq90345 86.0 7e-12 >seq251147 Length=238287 Score = 145 bits (160), Expect = 9e-30 Identities = 265/381 (70%), Gaps = 8/381 (2%) Strand=Plus/Minus Query 9512 ACTTGGATCTTACGATCAAAGCGACCTGGACGAAGGAGCGCGTCATCAAGGATATCAACG 9571 ||||| | | |||||| || |||||||| || | ||||| | |||||| | || | Sbjct 146665 ACTTGTACTTGACGATCGAAACGACCTGGGCGTAATAGCGCTTTATCAAGTACGTCTGCA 146606 Query 9572 CGATTCGTCGCGGCGATGACAACAATACCT--GTTTCATTATCAAAACCATCCATCTCTG 9629 || || ||||| || |||| || || ||| ||| | || ||||||| |||||||| Sbjct 146605 CGGTTGGTCGCAGCAATGATAATAACGCCTTCGTTACCTT--CAAAACCGTCCATCTCAA 146548 Query 9630 TCAAAAGTTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTG-GCATACCACCAGCACTG 9688 ||| | ||||| | |||||| || || |||||||| | || | |||| || Sbjct 146547 CCAATAACTGGTTTAGAGTTTGCTCACGCTCATCATTACCACCGCCTGTT-CCAGAACCA 146489 Query 9689 CGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACGATGCATGGTTGATTTTCGCGA 9748 || || || || |||||||||||||| ||||||| || || ||| | ||| Sbjct 146488 CGATGACGACCAACTGCATCAATCTCATCGATGAAGATAATACAAGGTGCACTTTTCTTC 146429 Query 9749 GCGACTTCAAAGAGATCCCGTACACGCTTGGCGCCCACACCAACAAACATCTCCACAAAG 9808 || |||||| | ||| |||||||| || ||||||||||||||||| || || || Sbjct 146428 GCCTGTTCAAACATATCACGTACACGTGAAGCACCCACACCAACAAACATTTCTACGAAA 146369 Query 9809 TTTGCGGCGGAACATTG-GATGAAGGGGACATTAGATTCACCCGCAATGGCTCGGGCGAG 9867 | | | ||| || | | ||| || || || | |||||| |||||||||| ||| | Sbjct 146368 TCAGAACCTGAA-ATCGAAAAGAACGGTACTTTGGCTTCACCAGCAATGGCTCTGGCCAA 146310 Query 9868 AAGAGTCTTACCCGTACCTGG 9888 || || ||||| |||||||| Sbjct 146309 TAGCGTTTTACCAGTACCTGG 146289 >seq248505 Length=7796 Score = 129 bits (142), Expect = 7e-25 Identities = 277/408 (68%), Gaps = 12/408 (3%) Strand=Plus/Plus Query 9517 GATCTTACGATCAAAGCGACCTGGACGAAGGAGCGCGTCATCAAGGATATCAACGCGATT 9576 ||| | ||| ||||| ||||||||||| || | || || | |||||| | || || Sbjct 4764 GATTTGACGGTCAAAACGACCTGGACGGAGTAAAGCCGGGTCCAAGATATCCGCACGGTT 4823 Query 9577 CGTCGCGGCGATGACAACAATACCTGTTTCATTATCA---AAACCATCCATCTCTGTCAA 9633 || || ||||| | | ||||| ||| || ||| || ||||||||||| | Sbjct 4824 TGTTGCTGCGATCATGATGATACC---TTCGTTTTCACTGAATCCATCCATCTCAACAAG 4880 Query 9634 AAGTTGGTTAATAGTTTGTTCCCGTTCATCA--TTCGCTGGCATACCACCAGCACTGCGT 9691 ||||||||| | |||||||| || |||||| | ||| | | | ||| || | ||| Sbjct 4881 AAGTTGGTTCAATGTTTGTTCGCGCTCATCATGTCCGCCGCC--AAGACCGGCTCCACGT 4938 Query 9692 TGCTTTCCCACGGCATCAATCTCATCAATGAAGACGATGCATGGTTGATTTTCGCGAGCG 9751 || || || |||||||||||||| ||||||| ||| ||||| |||| || Sbjct 4939 TGACGACCAACCGCATCAATCTCATCGATGAAGATGATACATGGGGCGTTTTTCTTCGCA 4998 Query 9752 ACTTCAAAGAGATCCCGTACACGCTTGGCGCCCACACCAACAAACATCTCCACAAAGTTT 9811 |||||| | || |||||||| || || ||||| ||||||||||| || |||| Sbjct 4999 TTTTCAAACAAGTCACGTACACGTGATGCACCGACACCGACAAACATCTCAACGAAGTCA 5058 Query 9812 GCGGCGGAACATTG-GATGAAGGGGACATTAGATTCACCCGCAATGGCTCGGGCGAGAAG 9870 | | ||| || | || ||| || || | |||||| || || ||||| || | Sbjct 5059 GAACCTGAA-ATCGAGAAGAACGGTACGCCGGCTTCACCAGCTGCTGCACGGGCAAGCAA 5117 Query 9871 AGTCTTACCCGTACCTGGCTTACCCGCGAGGAGGGCACCTCGTGGAAT 9918 || ||||| |||||||| ||| | |||||| ||||| ||||| Sbjct 5118 TGTTTTACCTGTACCTGGAGGACCTACAAGGAGGACACCTTTAGGAAT 5165 >seq119666 Length=8982 Score = 129 bits (142), Expect = 7e-25 Identities = 305/455 (67%), Gaps = 12/455 (3%) Strand=Plus/Plus Query 9524 CGATCAAAGCGACCTGGACGAAGGAGCGCGTCATCAAGGATATCAACGCGATTCGTCGCG 9583 || ||||| || ||||| | || | ||| ||||| || || | | || || || Sbjct 2036 CGGTCAAAACGTCCTGGTCTCAGCAAAGCGGAGTCAAGAATGTCTGCTCTGTTGGTTGCA 2095 Query 9584 GCGATGACAACAATACCTGTTTCATTATCAAAACCATCCATCTCTGTCAAAAGTTGGTTA 9643 || | || | || ||| || | | ||||||||||||||||| ||||| || || ||| Sbjct 2096 GCAACTACGATAACACCAGTGTTACCCTCAAAACCATCCATCTCAGTCAAGAGCTGATTA 2155 Query 9644 ATAGTTTGTTCCCGTTCATCATTCGCTGGCATACCA---CCAGCACTGCGTTGCTTTCCC 9700 | ||| ||||| | ||||||||| || |||| || | | | |||| | || Sbjct 2156 AGAGTCTGTTCTCTTTCATCATTACCT---CCACCAATTCCGGTTCCTCTTTGCCTACCA 2212 Query 9701 ACGGCATCAATCTCATCAATGAAGACGATGCATGGTTGATTTTCGCGAGCGACTTCAAAG 9760 || ||||| || ||||||| || || ||||| || |||||| || || || Sbjct 2213 ACAGCATCTATTTCATCAACAAAAACAATGCAGGGCGCATTTTCCTTGGCTTTTTTGAAA 2272 Query 9761 AGATCCCGTACACGCTT--GGCGCCCACACCAACAAACATCTCCACAAAGTTTGCGGCGG 9818 ||||| || ||| ||| ||| || ||||| || |||||||||||||| | | | | Sbjct 2273 AGATCACG--CACCCTTGAGGCACCAACACCGACGAACATCTCCACAAACTCAGAACCCG 2330 Query 9819 AACATTG-GATGAAGGGGACATTAGATTCACCCGCAATGGCTCGGGCGAGAAGAGTCTTA 9877 | || | | |||||| ||| | |||||| ||||||||| || | || || ||| Sbjct 2331 -AGATGGAAAAGAAGGGTACACCGGCTTCACCAGCAATGGCTTTTGCCAACAGGGTTTTA 2389 Query 9878 CCCGTACCTGGCTTACCCGCGAGGAGGGCACCTCGTGGAATCTTGGCGCCACTTCCAAAG 9937 || ||||| || ||| ||||| ||||| || ||| ||| ||| || | Sbjct 2390 CCAGTACCAGGAGGACCAATAAGGAGAACACCTTTCGGGATCCGGGCACCAACCGCAGTG 2449 Query 9938 TATCTCTCAGGTTGCTTAAGAAAATCCACAATTTC 9972 |||||||||| | ||| ||||| ||||| | ||| Sbjct 2450 AATCTCTCAGGCTTCTTCAGAAACTCCACGACTTC 2484 >seq146431 Length=15796 Score = 122 bits (134), Expect = 1e-22 Identities = 154/211 (73%), Gaps = 3/211 (1%) Strand=Plus/Minus Query 94727 TCCAAACAGTTCCGTGTATTCAAAAGAAAGCGGATTGGGCTATGAAGTGGTTTGATACAA 94786 || ||||| |||| ||| || |||||||| | |||||||||| ||| | ||| | Sbjct 4356 TCGAAACAATTCCTTGTGTTGCTAAGAAAGCTCAATGGGCTATGACTTGGATCGATGGA- 4298 Query 94787 AGTCGCGTTCCTTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCT 94846 || | | |||||||| ||| || | || || || |||||||| ||||||||||||| Sbjct 4297 --TCTCAAACTTTTGCTGAACGAATCGTAGCTTTCGCTTGTGTTGAAGGTATCTTCTTCT 4240 Query 94847 CTGGTTCCTTCTGCGCTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCT 94906 | ||| |||||| | |||| ||||| ||||| || || |||||||| || | || Sbjct 4239 CAGGTAGCTTCTGTTCGATTTTCTGGCTTAAGAAACGTGGACTCATGCCTGGATTAACCT 4180 Query 94907 TCTCCAACGAGCTTATCTCTCGTGACGAGGG 94937 |||| ||||| | ||||| || ||||| || Sbjct 4179 TCTCTAACGAATTGATCTCACGAGACGAAGG 4149 >seq27195 Length=13093 Score = 122 bits (134), Expect = 1e-22 Identities = 390/597 (65%), Gaps = 11/597 (2%) Strand=Plus/Plus Query 94345 GAACCTCTCCTAGCCCCCACACTAAACAGATTTACTGTGTTCCCCCTGAAGTATCCACAC 94404 || || |||||| | || || | ||||||| | |||| || | | || ||||| Sbjct 8621 GAGCCGCTCCTAACTCCGACGCCGGACAGATTCTGTATGTTTCCGATTCACTACCCACAG 8680 Query 94405 CTCTGGGAACTCTATAAGAAGGCTCAAATGAGTAAT-TGGACTGCTGAAGAGGTAGATCT 94463 ||||||| | || ||||| || | || | | ||||| || ||||| |||||||| Sbjct 8681 ATCTGGGAGATGTACAAGAAAGC-CGAAGCATCGTTCTGGACCGCCGAAGAAGTAGATCT 8739 Query 94464 CTCAAAGGATTTGGACG--ATTGGAAGACTCTAAATGAAAATGAAAAGAAATTCATAAAA 94521 ||| | || ||||| | ||| ||| ||| || || ||| | ||||| ||| Sbjct 8740 ATCACAAGAC--GGACGTGACTGGGAGAATCTCAACGACGGAGAACGTCACTTCATCAAA 8797 Query 94522 TACATCCTGGCATTCTTTGCTGGATCCGATGGAATTGTTTTTGAGAATATCAATAA-CAA 94580 || |||| || ||||| || | ||| || ||||| ||| | |||||| || | | | Sbjct 8798 CACGTCCTCGCTTTCTTCGCCGCATCTGACGGAATCGTTCTAGAGAATCTCGCTTCTCGA 8857 Query 94581 CTTTGCTGATGAGGTGCAATCCTCTGAAGCGAGATCCTTCTATGCGTATCAGTGTCATAA 94640 | | | || || ||| |||||||||| | | ||||| | | ||| | Sbjct 8858 TTCATGTCA-GATGTACAAGTCTCTGAAGCGCGTGCTTTCTACGGATTCCAGATCGCGAT 8916 Query 94641 TGAAATGGTGCATGGGGAGACATACAGTAAACTCATAGACAAGTATATTAAGGATGGTGC 94700 ||| | | ||| |||| || ||| || | || | || || || ||| Sbjct 8917 TGAGAATATCCATTCTGAGATGTATAGTCTCCTTCTGGATACATACATCAAAGATAACAA 8976 Query 94701 TGAGAAGAAGCAGCTCTTTGAAGCCATCCAAACAGTTCCGTGTATTCAAAAGAAAGCGGA 94760 |||| | || ||||| || ||| ||||| | || || | |||||||| | Sbjct 8977 AGAGAGAGATCATCTCTTCCGCGCAATCGAAACAATCCCTTGCGTCGCTAAGAAAGCTCA 9036 Query 94761 TTGGGCTATGAAGTGGTTTGATACAAAGTCGCGTTCCTTTGCTGAGCGACTCTTCGCATT 94820 |||||||||| ||| | ||| | || | | || ||||| ||| || |||| || Sbjct 9037 ATGGGCTATGACATGGATCGATGGA---TCTCAGACTTTCGCTGAACGAATCGTCGCTTT 9093 Query 94821 TGCGTGTGTTGAGGGTATCTTCTTCTCTGGTTCCTTCTGCGCTATTTATTGGCTCAAGAA 94880 ||||| || || |||||||||||||| ||| |||||| | |||| |||||||| || Sbjct 9094 CGCGTGCGTCGAAGGTATCTTCTTCTCCGGTAGCTTCTGTTCGATTTTCTGGCTCAAAAA 9153 Query 94881 GCGAGGTCTCATGCCAGGTCTCTGCTTCTCCAACGAGCTTATCTCTCGTGACGAGGG 94937 ||||| |||||||| || | ||||| |||||| | ||||| || ||||| || Sbjct 9154 ACGAGGGCTCATGCCTGGGTTAACTTTCTCAAACGAGTTAATCTCACGAGACGAAGG 9210 >seq99228 Length=25189 Score = 116 bits (128), Expect = 4e-21 Identities = 250/368 (68%), Gaps = 12/368 (3%) Strand=Plus/Minus Query 9611 TCAAAACCATCCATCTCTGTCAAAAGTTGGTTAATAGTTTGTTCCCGTTCATCATTCGCT 9670 ||||||||||||||||| || | || || |||| ||| ||||| | ||||||||| || Sbjct 21442 TCAAAACCATCCATCTCAGTAAGGAGCTGATTAAGAGTCTGTTCTCTTTCATCATTACCT 21383 Query 9671 GGCATACCA---CCAGCACTGCGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACG 9727 |||| || | | | |||| | || || ||||| || ||||||| || || Sbjct 21382 ---CCACCAATTCCGGTTCCTCTTTGCCTACCAACAGCATCTATTTCATCAACAAAAACA 21326 Query 9728 ATGCATGGTTGATTTTCGCGAGCGACTTCAAAGAGATCCCGTACACGCTT--GGCGCCCA 9785 ||||| || |||||| || || || ||||| || ||| ||| ||| || | Sbjct 21325 ATGCAGGGAGCATTTTCCTTGGCCTTTTTGAAAAGATCACG--CACCCTTGAGGCACCAA 21268 Query 9786 CACCAACAAACATCTCCACAAAGTTTGCGGCGGAACATTG-GATGAAGGGGACATTAGAT 9844 |||| ||||||||||| ||||| | | | | | || | | |||||| ||| || | Sbjct 21267 CACCGACAAACATCTCAACAAACTCAGAACCCG-AGATGGAAAAGAAGGGTACACCAGCT 21209 Query 9845 TCACCCGCAATGGCTCGGGCGAGAAGAGTCTTACCCGTACCTGGCTTACCCGCGAGGAGG 9904 ||||| ||||| ||| || | | || ||||| ||||| || ||| | ||||| Sbjct 21208 TCACCAGCAATAGCTTTTGCCAATAAGGTTTTACCAGTACCAGGAGGACCAACAAGGAGA 21149 Query 9905 GCACCTCGTGGAATCTTGGCGCCACTTCCAAAGTATCTCTCAGGTTGCTTAAGAAAATCC 9964 ||||| ||| ||| ||| ||| || | | |||||||| | ||| ||||| ||| Sbjct 21148 ACACCTTTTGGGATCCGGGCACCAACAGCAGTGAACCTCTCAGGCTTCTTCAGAAACTCC 21089 Query 9965 ACAATTTC 9972 || | ||| Sbjct 21088 ACCACTTC 21081 >seq90345 Length=8683 Score = 86.0 bits (94), Expect = 7e-12 Identities = 194/285 (68%), Gaps = 20/285 (7%) Strand=Plus/Minus Query 9614 AAACCATCCATCTCTGTCAAAAGTTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTGGC 9673 |||||||||||||| ||||| || || || || || ||||| | |||||||| | | Sbjct 4950 AAACCATCCATCTCAGTCAAGAGCTGATTGATCGTCTGTTCTCTCTCATCATTTCCA--C 4893 Query 9674 ATACCA--CCAGCACTGCGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACGATGC 9731 | ||| ||||| | | ||| | || || ||||||||||||||||||||||| || | Sbjct 4892 CTCCCATACCAGCTCCTCTCTGCCTACCAACAGCATCAATCTCATCAATGAAGACAATAC 4833 Query 9732 ATGG----TTGATTTTCGCGAGCGACT--TCAAAGAGATCCCGTACACGCTTG--GCGCC 9783 | || ||| |||||| || ||||| | ||||| || || || | || || Sbjct 4832 AAGGTGCATTGGATTTCGC------CTTGTCAAACAAATCCC-TA-ACCCTAGAAGCACC 4781 Query 9784 CACACCAACAAACATCTCCACAAAGTTTGCGGCGGAACATTGGATGAAGGGGACATTAGA 9843 ||||| || || | |||||| || | | || | || || ||| || || | Sbjct 4780 AACACCGACGAAAAGCTCCACGAACTCCGACGCAGCGCAAGAGAAGAAAGGCACTCCTGC 4721 Query 9844 TTCACCCGCAATGGCTCGGGCGAGAAGAGTCTTACCCGTACCTGG 9888 ||| || || | |||| || | ||||||||| ||||| || || Sbjct 4720 TTCTCCAGCCACAGCTCTAGCCAAAAGAGTCTTCCCCGTCCCCGG 4676 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 581312504786720