Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Arabis_20nordmanniana_20[genbank_20GCA_5F001484925.1_202016-01-04]
267,228 sequences; 342,306,570 total letters
Query= NC_028093.1
Length=182309
Score E
Sequences producing significant alignments: (Bits) Value
seq251147 145 9e-30
seq248505 129 7e-25
seq119666 129 7e-25
seq146431 122 1e-22
seq27195 122 1e-22
seq99228 116 4e-21
seq90345 86.0 7e-12
>seq251147
Length=238287
Score = 145 bits (160), Expect = 9e-30
Identities = 265/381 (70%), Gaps = 8/381 (2%)
Strand=Plus/Minus
Query 9512 ACTTGGATCTTACGATCAAAGCGACCTGGACGAAGGAGCGCGTCATCAAGGATATCAACG 9571
||||| | | |||||| || |||||||| || | ||||| | |||||| | || |
Sbjct 146665 ACTTGTACTTGACGATCGAAACGACCTGGGCGTAATAGCGCTTTATCAAGTACGTCTGCA 146606
Query 9572 CGATTCGTCGCGGCGATGACAACAATACCT--GTTTCATTATCAAAACCATCCATCTCTG 9629
|| || ||||| || |||| || || ||| ||| | || ||||||| ||||||||
Sbjct 146605 CGGTTGGTCGCAGCAATGATAATAACGCCTTCGTTACCTT--CAAAACCGTCCATCTCAA 146548
Query 9630 TCAAAAGTTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTG-GCATACCACCAGCACTG 9688
||| | ||||| | |||||| || || |||||||| | || | |||| ||
Sbjct 146547 CCAATAACTGGTTTAGAGTTTGCTCACGCTCATCATTACCACCGCCTGTT-CCAGAACCA 146489
Query 9689 CGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACGATGCATGGTTGATTTTCGCGA 9748
|| || || || |||||||||||||| ||||||| || || ||| | |||
Sbjct 146488 CGATGACGACCAACTGCATCAATCTCATCGATGAAGATAATACAAGGTGCACTTTTCTTC 146429
Query 9749 GCGACTTCAAAGAGATCCCGTACACGCTTGGCGCCCACACCAACAAACATCTCCACAAAG 9808
|| |||||| | ||| |||||||| || ||||||||||||||||| || || ||
Sbjct 146428 GCCTGTTCAAACATATCACGTACACGTGAAGCACCCACACCAACAAACATTTCTACGAAA 146369
Query 9809 TTTGCGGCGGAACATTG-GATGAAGGGGACATTAGATTCACCCGCAATGGCTCGGGCGAG 9867
| | | ||| || | | ||| || || || | |||||| |||||||||| ||| |
Sbjct 146368 TCAGAACCTGAA-ATCGAAAAGAACGGTACTTTGGCTTCACCAGCAATGGCTCTGGCCAA 146310
Query 9868 AAGAGTCTTACCCGTACCTGG 9888
|| || ||||| ||||||||
Sbjct 146309 TAGCGTTTTACCAGTACCTGG 146289
>seq248505
Length=7796
Score = 129 bits (142), Expect = 7e-25
Identities = 277/408 (68%), Gaps = 12/408 (3%)
Strand=Plus/Plus
Query 9517 GATCTTACGATCAAAGCGACCTGGACGAAGGAGCGCGTCATCAAGGATATCAACGCGATT 9576
||| | ||| ||||| ||||||||||| || | || || | |||||| | || ||
Sbjct 4764 GATTTGACGGTCAAAACGACCTGGACGGAGTAAAGCCGGGTCCAAGATATCCGCACGGTT 4823
Query 9577 CGTCGCGGCGATGACAACAATACCTGTTTCATTATCA---AAACCATCCATCTCTGTCAA 9633
|| || ||||| | | ||||| ||| || ||| || ||||||||||| |
Sbjct 4824 TGTTGCTGCGATCATGATGATACC---TTCGTTTTCACTGAATCCATCCATCTCAACAAG 4880
Query 9634 AAGTTGGTTAATAGTTTGTTCCCGTTCATCA--TTCGCTGGCATACCACCAGCACTGCGT 9691
||||||||| | |||||||| || |||||| | ||| | | | ||| || | |||
Sbjct 4881 AAGTTGGTTCAATGTTTGTTCGCGCTCATCATGTCCGCCGCC--AAGACCGGCTCCACGT 4938
Query 9692 TGCTTTCCCACGGCATCAATCTCATCAATGAAGACGATGCATGGTTGATTTTCGCGAGCG 9751
|| || || |||||||||||||| ||||||| ||| ||||| |||| ||
Sbjct 4939 TGACGACCAACCGCATCAATCTCATCGATGAAGATGATACATGGGGCGTTTTTCTTCGCA 4998
Query 9752 ACTTCAAAGAGATCCCGTACACGCTTGGCGCCCACACCAACAAACATCTCCACAAAGTTT 9811
|||||| | || |||||||| || || ||||| ||||||||||| || ||||
Sbjct 4999 TTTTCAAACAAGTCACGTACACGTGATGCACCGACACCGACAAACATCTCAACGAAGTCA 5058
Query 9812 GCGGCGGAACATTG-GATGAAGGGGACATTAGATTCACCCGCAATGGCTCGGGCGAGAAG 9870
| | ||| || | || ||| || || | |||||| || || ||||| || |
Sbjct 5059 GAACCTGAA-ATCGAGAAGAACGGTACGCCGGCTTCACCAGCTGCTGCACGGGCAAGCAA 5117
Query 9871 AGTCTTACCCGTACCTGGCTTACCCGCGAGGAGGGCACCTCGTGGAAT 9918
|| ||||| |||||||| ||| | |||||| ||||| |||||
Sbjct 5118 TGTTTTACCTGTACCTGGAGGACCTACAAGGAGGACACCTTTAGGAAT 5165
>seq119666
Length=8982
Score = 129 bits (142), Expect = 7e-25
Identities = 305/455 (67%), Gaps = 12/455 (3%)
Strand=Plus/Plus
Query 9524 CGATCAAAGCGACCTGGACGAAGGAGCGCGTCATCAAGGATATCAACGCGATTCGTCGCG 9583
|| ||||| || ||||| | || | ||| ||||| || || | | || || ||
Sbjct 2036 CGGTCAAAACGTCCTGGTCTCAGCAAAGCGGAGTCAAGAATGTCTGCTCTGTTGGTTGCA 2095
Query 9584 GCGATGACAACAATACCTGTTTCATTATCAAAACCATCCATCTCTGTCAAAAGTTGGTTA 9643
|| | || | || ||| || | | ||||||||||||||||| ||||| || || |||
Sbjct 2096 GCAACTACGATAACACCAGTGTTACCCTCAAAACCATCCATCTCAGTCAAGAGCTGATTA 2155
Query 9644 ATAGTTTGTTCCCGTTCATCATTCGCTGGCATACCA---CCAGCACTGCGTTGCTTTCCC 9700
| ||| ||||| | ||||||||| || |||| || | | | |||| | ||
Sbjct 2156 AGAGTCTGTTCTCTTTCATCATTACCT---CCACCAATTCCGGTTCCTCTTTGCCTACCA 2212
Query 9701 ACGGCATCAATCTCATCAATGAAGACGATGCATGGTTGATTTTCGCGAGCGACTTCAAAG 9760
|| ||||| || ||||||| || || ||||| || |||||| || || ||
Sbjct 2213 ACAGCATCTATTTCATCAACAAAAACAATGCAGGGCGCATTTTCCTTGGCTTTTTTGAAA 2272
Query 9761 AGATCCCGTACACGCTT--GGCGCCCACACCAACAAACATCTCCACAAAGTTTGCGGCGG 9818
||||| || ||| ||| ||| || ||||| || |||||||||||||| | | | |
Sbjct 2273 AGATCACG--CACCCTTGAGGCACCAACACCGACGAACATCTCCACAAACTCAGAACCCG 2330
Query 9819 AACATTG-GATGAAGGGGACATTAGATTCACCCGCAATGGCTCGGGCGAGAAGAGTCTTA 9877
| || | | |||||| ||| | |||||| ||||||||| || | || || |||
Sbjct 2331 -AGATGGAAAAGAAGGGTACACCGGCTTCACCAGCAATGGCTTTTGCCAACAGGGTTTTA 2389
Query 9878 CCCGTACCTGGCTTACCCGCGAGGAGGGCACCTCGTGGAATCTTGGCGCCACTTCCAAAG 9937
|| ||||| || ||| ||||| ||||| || ||| ||| ||| || |
Sbjct 2390 CCAGTACCAGGAGGACCAATAAGGAGAACACCTTTCGGGATCCGGGCACCAACCGCAGTG 2449
Query 9938 TATCTCTCAGGTTGCTTAAGAAAATCCACAATTTC 9972
|||||||||| | ||| ||||| ||||| | |||
Sbjct 2450 AATCTCTCAGGCTTCTTCAGAAACTCCACGACTTC 2484
>seq146431
Length=15796
Score = 122 bits (134), Expect = 1e-22
Identities = 154/211 (73%), Gaps = 3/211 (1%)
Strand=Plus/Minus
Query 94727 TCCAAACAGTTCCGTGTATTCAAAAGAAAGCGGATTGGGCTATGAAGTGGTTTGATACAA 94786
|| ||||| |||| ||| || |||||||| | |||||||||| ||| | ||| |
Sbjct 4356 TCGAAACAATTCCTTGTGTTGCTAAGAAAGCTCAATGGGCTATGACTTGGATCGATGGA- 4298
Query 94787 AGTCGCGTTCCTTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCT 94846
|| | | |||||||| ||| || | || || || |||||||| |||||||||||||
Sbjct 4297 --TCTCAAACTTTTGCTGAACGAATCGTAGCTTTCGCTTGTGTTGAAGGTATCTTCTTCT 4240
Query 94847 CTGGTTCCTTCTGCGCTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCT 94906
| ||| |||||| | |||| ||||| ||||| || || |||||||| || | ||
Sbjct 4239 CAGGTAGCTTCTGTTCGATTTTCTGGCTTAAGAAACGTGGACTCATGCCTGGATTAACCT 4180
Query 94907 TCTCCAACGAGCTTATCTCTCGTGACGAGGG 94937
|||| ||||| | ||||| || ||||| ||
Sbjct 4179 TCTCTAACGAATTGATCTCACGAGACGAAGG 4149
>seq27195
Length=13093
Score = 122 bits (134), Expect = 1e-22
Identities = 390/597 (65%), Gaps = 11/597 (2%)
Strand=Plus/Plus
Query 94345 GAACCTCTCCTAGCCCCCACACTAAACAGATTTACTGTGTTCCCCCTGAAGTATCCACAC 94404
|| || |||||| | || || | ||||||| | |||| || | | || |||||
Sbjct 8621 GAGCCGCTCCTAACTCCGACGCCGGACAGATTCTGTATGTTTCCGATTCACTACCCACAG 8680
Query 94405 CTCTGGGAACTCTATAAGAAGGCTCAAATGAGTAAT-TGGACTGCTGAAGAGGTAGATCT 94463
||||||| | || ||||| || | || | | ||||| || ||||| ||||||||
Sbjct 8681 ATCTGGGAGATGTACAAGAAAGC-CGAAGCATCGTTCTGGACCGCCGAAGAAGTAGATCT 8739
Query 94464 CTCAAAGGATTTGGACG--ATTGGAAGACTCTAAATGAAAATGAAAAGAAATTCATAAAA 94521
||| | || ||||| | ||| ||| ||| || || ||| | ||||| |||
Sbjct 8740 ATCACAAGAC--GGACGTGACTGGGAGAATCTCAACGACGGAGAACGTCACTTCATCAAA 8797
Query 94522 TACATCCTGGCATTCTTTGCTGGATCCGATGGAATTGTTTTTGAGAATATCAATAA-CAA 94580
|| |||| || ||||| || | ||| || ||||| ||| | |||||| || | | |
Sbjct 8798 CACGTCCTCGCTTTCTTCGCCGCATCTGACGGAATCGTTCTAGAGAATCTCGCTTCTCGA 8857
Query 94581 CTTTGCTGATGAGGTGCAATCCTCTGAAGCGAGATCCTTCTATGCGTATCAGTGTCATAA 94640
| | | || || ||| |||||||||| | | ||||| | | ||| |
Sbjct 8858 TTCATGTCA-GATGTACAAGTCTCTGAAGCGCGTGCTTTCTACGGATTCCAGATCGCGAT 8916
Query 94641 TGAAATGGTGCATGGGGAGACATACAGTAAACTCATAGACAAGTATATTAAGGATGGTGC 94700
||| | | ||| |||| || ||| || | || | || || || |||
Sbjct 8917 TGAGAATATCCATTCTGAGATGTATAGTCTCCTTCTGGATACATACATCAAAGATAACAA 8976
Query 94701 TGAGAAGAAGCAGCTCTTTGAAGCCATCCAAACAGTTCCGTGTATTCAAAAGAAAGCGGA 94760
|||| | || ||||| || ||| ||||| | || || | |||||||| |
Sbjct 8977 AGAGAGAGATCATCTCTTCCGCGCAATCGAAACAATCCCTTGCGTCGCTAAGAAAGCTCA 9036
Query 94761 TTGGGCTATGAAGTGGTTTGATACAAAGTCGCGTTCCTTTGCTGAGCGACTCTTCGCATT 94820
|||||||||| ||| | ||| | || | | || ||||| ||| || |||| ||
Sbjct 9037 ATGGGCTATGACATGGATCGATGGA---TCTCAGACTTTCGCTGAACGAATCGTCGCTTT 9093
Query 94821 TGCGTGTGTTGAGGGTATCTTCTTCTCTGGTTCCTTCTGCGCTATTTATTGGCTCAAGAA 94880
||||| || || |||||||||||||| ||| |||||| | |||| |||||||| ||
Sbjct 9094 CGCGTGCGTCGAAGGTATCTTCTTCTCCGGTAGCTTCTGTTCGATTTTCTGGCTCAAAAA 9153
Query 94881 GCGAGGTCTCATGCCAGGTCTCTGCTTCTCCAACGAGCTTATCTCTCGTGACGAGGG 94937
||||| |||||||| || | ||||| |||||| | ||||| || ||||| ||
Sbjct 9154 ACGAGGGCTCATGCCTGGGTTAACTTTCTCAAACGAGTTAATCTCACGAGACGAAGG 9210
>seq99228
Length=25189
Score = 116 bits (128), Expect = 4e-21
Identities = 250/368 (68%), Gaps = 12/368 (3%)
Strand=Plus/Minus
Query 9611 TCAAAACCATCCATCTCTGTCAAAAGTTGGTTAATAGTTTGTTCCCGTTCATCATTCGCT 9670
||||||||||||||||| || | || || |||| ||| ||||| | ||||||||| ||
Sbjct 21442 TCAAAACCATCCATCTCAGTAAGGAGCTGATTAAGAGTCTGTTCTCTTTCATCATTACCT 21383
Query 9671 GGCATACCA---CCAGCACTGCGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACG 9727
|||| || | | | |||| | || || ||||| || ||||||| || ||
Sbjct 21382 ---CCACCAATTCCGGTTCCTCTTTGCCTACCAACAGCATCTATTTCATCAACAAAAACA 21326
Query 9728 ATGCATGGTTGATTTTCGCGAGCGACTTCAAAGAGATCCCGTACACGCTT--GGCGCCCA 9785
||||| || |||||| || || || ||||| || ||| ||| ||| || |
Sbjct 21325 ATGCAGGGAGCATTTTCCTTGGCCTTTTTGAAAAGATCACG--CACCCTTGAGGCACCAA 21268
Query 9786 CACCAACAAACATCTCCACAAAGTTTGCGGCGGAACATTG-GATGAAGGGGACATTAGAT 9844
|||| ||||||||||| ||||| | | | | | || | | |||||| ||| || |
Sbjct 21267 CACCGACAAACATCTCAACAAACTCAGAACCCG-AGATGGAAAAGAAGGGTACACCAGCT 21209
Query 9845 TCACCCGCAATGGCTCGGGCGAGAAGAGTCTTACCCGTACCTGGCTTACCCGCGAGGAGG 9904
||||| ||||| ||| || | | || ||||| ||||| || ||| | |||||
Sbjct 21208 TCACCAGCAATAGCTTTTGCCAATAAGGTTTTACCAGTACCAGGAGGACCAACAAGGAGA 21149
Query 9905 GCACCTCGTGGAATCTTGGCGCCACTTCCAAAGTATCTCTCAGGTTGCTTAAGAAAATCC 9964
||||| ||| ||| ||| ||| || | | |||||||| | ||| ||||| |||
Sbjct 21148 ACACCTTTTGGGATCCGGGCACCAACAGCAGTGAACCTCTCAGGCTTCTTCAGAAACTCC 21089
Query 9965 ACAATTTC 9972
|| | |||
Sbjct 21088 ACCACTTC 21081
>seq90345
Length=8683
Score = 86.0 bits (94), Expect = 7e-12
Identities = 194/285 (68%), Gaps = 20/285 (7%)
Strand=Plus/Minus
Query 9614 AAACCATCCATCTCTGTCAAAAGTTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTGGC 9673
|||||||||||||| ||||| || || || || || ||||| | |||||||| | |
Sbjct 4950 AAACCATCCATCTCAGTCAAGAGCTGATTGATCGTCTGTTCTCTCTCATCATTTCCA--C 4893
Query 9674 ATACCA--CCAGCACTGCGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACGATGC 9731
| ||| ||||| | | ||| | || || ||||||||||||||||||||||| || |
Sbjct 4892 CTCCCATACCAGCTCCTCTCTGCCTACCAACAGCATCAATCTCATCAATGAAGACAATAC 4833
Query 9732 ATGG----TTGATTTTCGCGAGCGACT--TCAAAGAGATCCCGTACACGCTTG--GCGCC 9783
| || ||| |||||| || ||||| | ||||| || || || | || ||
Sbjct 4832 AAGGTGCATTGGATTTCGC------CTTGTCAAACAAATCCC-TA-ACCCTAGAAGCACC 4781
Query 9784 CACACCAACAAACATCTCCACAAAGTTTGCGGCGGAACATTGGATGAAGGGGACATTAGA 9843
||||| || || | |||||| || | | || | || || ||| || || |
Sbjct 4780 AACACCGACGAAAAGCTCCACGAACTCCGACGCAGCGCAAGAGAAGAAAGGCACTCCTGC 4721
Query 9844 TTCACCCGCAATGGCTCGGGCGAGAAGAGTCTTACCCGTACCTGG 9888
||| || || | |||| || | ||||||||| ||||| || ||
Sbjct 4720 TTCTCCAGCCACAGCTCTAGCCAAAAGAGTCTTCCCCGTCCCCGG 4676
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 581312504786720
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