Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Arabis_20nordmanniana_20[genbank_20GCA_5F001484925.1_202016-01-04]
267,228 sequences; 342,306,570 total letters
Query= NC_028108.1
Length=171454
Score E
Sequences producing significant alignments: (Bits) Value
seq27195 120 3e-22
seq146431 113 5e-20
>seq27195
Length=13093
Score = 120 bits (132), Expect = 3e-22
Identities = 564/874 (65%), Gaps = 34/874 (4%)
Strand=Plus/Plus
Query 59562 TTTCCTATACGGTACCCGGATCTGTGGGCCCTGTATAAGAAAGCGATCGGTTCATTCTGG 59621
||||| || | ||||| | | |||| |||| |||||||| | || ||||||
Sbjct 8660 TTTCCGATTCACTACCCACAGATCTGGGAGATGTACAAGAAAGCCGAAGCATCGTTCTGG 8719
Query 59622 TCCGTCGAGGAGATTGACCTCGCCGGAGACCTGAAG-GATTGGGACAAGCTCAATTACGA 59680
||| ||| || | || || | |||| || | || ||||| || ||||| |||
Sbjct 8720 ACCGCCGAAGAAGTAGATCTATCACAAGACG-GACGTGACTGGGAGAATCTCAACGACGG 8778
Query 59681 CGAGCAGCATTTCATCAAGATGGTCCTGGCCTTCTTCGCGGCGAGTGATGGAATTGTGAT 59740
|| | || |||||||| ||||| || |||||||| || ||| ||||| || |
Sbjct 8779 AGAACGTCACTTCATCAAACACGTCCTCGCTTTCTTCGCCGCATCTGACGGAATCGTTCT 8838
Query 59741 GGAAAATATAGA--CATGAACTTTTCCAAGGATGTCCAGATTGCCGAGGCCCGGTCGTTC 59798
|| ||| | | | || | || ||||| || | | || || || | |||
Sbjct 8839 AGAGAATCTCGCTTCTCGATTCATGTCA--GATGTACAAGTCTCTGAAGCGCGTGCTTTC 8896
Query 59799 TACGCGTATCAG-TCGTTCAACGAGTCTATCCACTCCGAGACGTACTCGCTCATGATCGA 59857
|||| | ||| ||| | ||| |||||| || |||| ||| ||| | | ||
Sbjct 8897 TACGGATTCCAGATCGCG-ATTGAGAATATCCATTCTGAGATGTATAGTCTCCTTCTGGA 8955
Query 59858 TAAGTTGGTCAAGGATCCGGAAGAGAAGGCTGGTCTGTTCCGTGCCATAGAGACG-TCCC 59916
|| | |||| ||| |||||| | | ||| ||||| || || || || ||||
Sbjct 8956 TACATACATCAAAGATAACAAAGAGAGAGATCATCTCTTCCGCGCAATCGAAACAATCCC 9015
Query 59917 CCGCAGTTAAACAAAAAGCAGAATGGGCCATGCAGTGGAT-GAGTCCTGGAGCATCA--- 59972
|| || | ||||| ||||||| ||| ||||| || |||| | |||
Sbjct 9016 TTGC-GTCGCTAAGAAAGCTCAATGGGCTATGACATGGATCGA----TGGATC-TCAGAC 9069
Query 59973 -TTTGCACAACGTCTCATAGCTTTTGCATGCGTGGAAGGAATCTTCTTCTCTGGCTCGTT 60031
|| || |||| || | ||||| || ||||| ||||| ||||||||||| || ||
Sbjct 9070 TTTCGCTGAACGAATCGTCGCTTTCGCGTGCGTCGAAGGTATCTTCTTCTCCGGTAGCTT 9129
Query 60032 CTGTGCTATTTTCTGGCTCAAAAAGCGTGGCCTCATGCCGGGCCTGAGTTTCTCCAACGA 60091
|||| | ||||||||||||||||| || || |||||||| || | | |||||| |||||
Sbjct 9130 CTGTTCGATTTTCTGGCTCAAAAAACGAGGGCTCATGCCTGGGTTAACTTTCTCAAACGA 9189
Query 60092 GCTGATTTCCCGGGACGAGGGCCTCCATCAGGAGTTTGCAGTGAC-GCTCTATTCACACC 60150
| | || || || ||||| ||| | || || || || || | | |||| |||||
Sbjct 9190 GTTAATCTCACGAGACGAAGGCTTACACTGCGATTTCGC-TTGCCTGATCTA--CACACT 9246
Query 60151 TATTGGAAAAATGCCCTTCCAAGGA---TATTCACAAGATTGTTCAGTGGG--CTTGTGA 60205
| | ||| | | | | |||| | | |||||| ||| | ||||
Sbjct 9247 TCTCCGAACGAAG-CTGACGGAGGAGCGAGTGAAGTCGATTGT---GTGCGACGCTGTGG 9302
Query 60206 AG-TGGAGAGCGAGTTCATCACAGAAGCGCTTCCATGCAAACTCATAGGTATGGACGCTG 60264
|| | ||||| ||||| | || |||||||| ||| | |||| ||| | ||
Sbjct 9303 AGATCGAGAGAGAGTTTGTGTGCGACGCGCTTCCGTGCGCGTTGGTAGGGATGAATCGTG 9362
Query 60265 GAGAAATGACGCAGTACATTCAGTTTGTCGCGGACCGCCTCATGGCCCAGTTTGGAGAAG 60324
| |||| |||| ||| ||||||| ||||| | || ||| | |||| | |
Sbjct 9363 AATTGATGAGTGAGTATATTGAGTTTGTTGCGGATAGGCTTTTGGGTGCGCTTGGGTATG 9422
Query 60325 GACCAATTTACGGCGTGAATAACCCTTTCGACTGGATGGAGACCATCTCGTTGGAAGGGA 60384
| | ||||| |||| ||| || || || ||||||||| |||||| | ||||||
Sbjct 9423 GTAAGGTGTACGGTGTGACTAATCCGTTTGATTGGATGGAGTTAATCTCGCTTCAAGGGA 9482
Query 60385 AGACCAACTTCTTTGAGAAGCGGGTCGGGGATTA 60418
| || ||||| ||||||||| | || || |||||
Sbjct 9483 AAACTAACTTTTTTGAGAAGAGAGTTGGTGATTA 9516
>seq146431
Length=15796
Score = 113 bits (124), Expect = 5e-20
Identities = 366/559 (65%), Gaps = 16/559 (3%)
Strand=Plus/Minus
Query 59562 TTTCCTATACGGTACCCGGATCTGTGGGCCCTGTATAAGAAAGCGATCGGTTCATTCTGG 59621
||||| || | ||||| | | |||| |||| |||||||| | || ||||||
Sbjct 4699 TTTCCGATTCACTACCCACAGATCTGGGAGATGTACAAGAAAGCCGAAGCATCCTTCTGG 4640
Query 59622 TCCGTCGAGGAGATTGACCTCGCCGGAGACCTGAAG-GATTGGGACAAGCTCAATTACGA 59680
||| ||| || | || || | |||| || | || ||||| || ||||| |||
Sbjct 4639 ACCGCCGAAGAAGTAGATCTATCACAAGACG-GACGTGACTGGGAAAATCTCAACGACGG 4581
Query 59681 CGAGCAGCATTTCATCAAGATGGTCCTGGCCTTCTTCGCGGCGAGTGATGGAATTGTGAT 59740
|| | || |||||||| ||||| ||||||||||| || ||| ||||| || |
Sbjct 4580 AGAACGTCACTTCATCAAACACGTCCTCGCCTTCTTCGCCGCATCTGACGGAATCGTCCT 4521
Query 59741 GGAAAATATAGA--CATGAACTTTTCCAAGGATGTCCAGATTGCCGAGGCCCGGTCGTTC 59798
|||||| | | | || | || ||||| || | |||| || || | |||
Sbjct 4520 CGAAAATCTCGCTTCTCGATTCATGTCA--GATGTACAAGTCTCCGAAGCGCGTGCATTC 4463
Query 59799 TACGCGTATCAG-TCGTTCAACGAGTCTATCCACTCCGAGACGTACTCGCTCATGATCGA 59857
|||| | ||| ||| | ||| |||||| || |||| ||| ||| | ||||
Sbjct 4462 TACGGATTTCAAATCGCG-ATTGAGAATATCCATTCTGAGATGTATAGTCTCTTACTCGA 4404
Query 59858 TAAGTTGGTCAAGGATCCGGAAGAGAAGGCTGGTCTGTTCCGTGCCATAGAGACGTCCCC 59917
|| | |||| ||| |||||| | | ||| ||||| || | || || ||
Sbjct 4403 TACTTACATCAAAGATAACAAAGAGAGAGATCATCTATTCCGCGCAGTCGAAACAATTCC 4344
Query 59918 CGCAGTTAAACAAAAAGCAGAATGGGCCATGCAGTGGAT-GAGTCCTGGAGC---ATCAT 59973
||| | ||||| ||||||| ||| ||||| || |||| | | | |
Sbjct 4343 TTGTGTTGCTAAGAAAGCTCAATGGGCTATGACTTGGATCGA----TGGATCTCAAACTT 4288
Query 59974 TTGCACAACGTCTCATAGCTTTTGCATGCGTGGAAGGAATCTTCTTCTCTGGCTCGTTCT 60033
|||| |||| || ||||||| || || || ||||| ||||||||||| || ||||
Sbjct 4287 TTGCTGAACGAATCGTAGCTTTCGCTTGTGTTGAAGGTATCTTCTTCTCAGGTAGCTTCT 4228
Query 60034 GTGCTATTTTCTGGCTCAAAAAGCGTGGCCTCATGCCGGGCCTGAGTTTCTCCAACGAGC 60093
|| | ||||||||||| || || ||||| |||||||| || | | ||||| |||||
Sbjct 4227 GTTCGATTTTCTGGCTTAAGAAACGTGGACTCATGCCTGGATTAACCTTCTCTAACGAAT 4168
Query 60094 TGATTTCCCGGGACGAGGG 60112
|||| || || ||||| ||
Sbjct 4167 TGATCTCACGAGACGAAGG 4149
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 546692535184320
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |