Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Arabis_20nordmanniana_20[genbank_20GCA_5F001484925.1_202016-01-04] 267,228 sequences; 342,306,570 total letters Query= NC_028108.1 Length=171454 Score E Sequences producing significant alignments: (Bits) Value seq27195 120 3e-22 seq146431 113 5e-20 >seq27195 Length=13093 Score = 120 bits (132), Expect = 3e-22 Identities = 564/874 (65%), Gaps = 34/874 (4%) Strand=Plus/Plus Query 59562 TTTCCTATACGGTACCCGGATCTGTGGGCCCTGTATAAGAAAGCGATCGGTTCATTCTGG 59621 ||||| || | ||||| | | |||| |||| |||||||| | || |||||| Sbjct 8660 TTTCCGATTCACTACCCACAGATCTGGGAGATGTACAAGAAAGCCGAAGCATCGTTCTGG 8719 Query 59622 TCCGTCGAGGAGATTGACCTCGCCGGAGACCTGAAG-GATTGGGACAAGCTCAATTACGA 59680 ||| ||| || | || || | |||| || | || ||||| || ||||| ||| Sbjct 8720 ACCGCCGAAGAAGTAGATCTATCACAAGACG-GACGTGACTGGGAGAATCTCAACGACGG 8778 Query 59681 CGAGCAGCATTTCATCAAGATGGTCCTGGCCTTCTTCGCGGCGAGTGATGGAATTGTGAT 59740 || | || |||||||| ||||| || |||||||| || ||| ||||| || | Sbjct 8779 AGAACGTCACTTCATCAAACACGTCCTCGCTTTCTTCGCCGCATCTGACGGAATCGTTCT 8838 Query 59741 GGAAAATATAGA--CATGAACTTTTCCAAGGATGTCCAGATTGCCGAGGCCCGGTCGTTC 59798 || ||| | | | || | || ||||| || | | || || || | ||| Sbjct 8839 AGAGAATCTCGCTTCTCGATTCATGTCA--GATGTACAAGTCTCTGAAGCGCGTGCTTTC 8896 Query 59799 TACGCGTATCAG-TCGTTCAACGAGTCTATCCACTCCGAGACGTACTCGCTCATGATCGA 59857 |||| | ||| ||| | ||| |||||| || |||| ||| ||| | | || Sbjct 8897 TACGGATTCCAGATCGCG-ATTGAGAATATCCATTCTGAGATGTATAGTCTCCTTCTGGA 8955 Query 59858 TAAGTTGGTCAAGGATCCGGAAGAGAAGGCTGGTCTGTTCCGTGCCATAGAGACG-TCCC 59916 || | |||| ||| |||||| | | ||| ||||| || || || || |||| Sbjct 8956 TACATACATCAAAGATAACAAAGAGAGAGATCATCTCTTCCGCGCAATCGAAACAATCCC 9015 Query 59917 CCGCAGTTAAACAAAAAGCAGAATGGGCCATGCAGTGGAT-GAGTCCTGGAGCATCA--- 59972 || || | ||||| ||||||| ||| ||||| || |||| | ||| Sbjct 9016 TTGC-GTCGCTAAGAAAGCTCAATGGGCTATGACATGGATCGA----TGGATC-TCAGAC 9069 Query 59973 -TTTGCACAACGTCTCATAGCTTTTGCATGCGTGGAAGGAATCTTCTTCTCTGGCTCGTT 60031 || || |||| || | ||||| || ||||| ||||| ||||||||||| || || Sbjct 9070 TTTCGCTGAACGAATCGTCGCTTTCGCGTGCGTCGAAGGTATCTTCTTCTCCGGTAGCTT 9129 Query 60032 CTGTGCTATTTTCTGGCTCAAAAAGCGTGGCCTCATGCCGGGCCTGAGTTTCTCCAACGA 60091 |||| | ||||||||||||||||| || || |||||||| || | | |||||| ||||| Sbjct 9130 CTGTTCGATTTTCTGGCTCAAAAAACGAGGGCTCATGCCTGGGTTAACTTTCTCAAACGA 9189 Query 60092 GCTGATTTCCCGGGACGAGGGCCTCCATCAGGAGTTTGCAGTGAC-GCTCTATTCACACC 60150 | | || || || ||||| ||| | || || || || || | | |||| ||||| Sbjct 9190 GTTAATCTCACGAGACGAAGGCTTACACTGCGATTTCGC-TTGCCTGATCTA--CACACT 9246 Query 60151 TATTGGAAAAATGCCCTTCCAAGGA---TATTCACAAGATTGTTCAGTGGG--CTTGTGA 60205 | | ||| | | | | |||| | | |||||| ||| | |||| Sbjct 9247 TCTCCGAACGAAG-CTGACGGAGGAGCGAGTGAAGTCGATTGT---GTGCGACGCTGTGG 9302 Query 60206 AG-TGGAGAGCGAGTTCATCACAGAAGCGCTTCCATGCAAACTCATAGGTATGGACGCTG 60264 || | ||||| ||||| | || |||||||| ||| | |||| ||| | || Sbjct 9303 AGATCGAGAGAGAGTTTGTGTGCGACGCGCTTCCGTGCGCGTTGGTAGGGATGAATCGTG 9362 Query 60265 GAGAAATGACGCAGTACATTCAGTTTGTCGCGGACCGCCTCATGGCCCAGTTTGGAGAAG 60324 | |||| |||| ||| ||||||| ||||| | || ||| | |||| | | Sbjct 9363 AATTGATGAGTGAGTATATTGAGTTTGTTGCGGATAGGCTTTTGGGTGCGCTTGGGTATG 9422 Query 60325 GACCAATTTACGGCGTGAATAACCCTTTCGACTGGATGGAGACCATCTCGTTGGAAGGGA 60384 | | ||||| |||| ||| || || || ||||||||| |||||| | |||||| Sbjct 9423 GTAAGGTGTACGGTGTGACTAATCCGTTTGATTGGATGGAGTTAATCTCGCTTCAAGGGA 9482 Query 60385 AGACCAACTTCTTTGAGAAGCGGGTCGGGGATTA 60418 | || ||||| ||||||||| | || || ||||| Sbjct 9483 AAACTAACTTTTTTGAGAAGAGAGTTGGTGATTA 9516 >seq146431 Length=15796 Score = 113 bits (124), Expect = 5e-20 Identities = 366/559 (65%), Gaps = 16/559 (3%) Strand=Plus/Minus Query 59562 TTTCCTATACGGTACCCGGATCTGTGGGCCCTGTATAAGAAAGCGATCGGTTCATTCTGG 59621 ||||| || | ||||| | | |||| |||| |||||||| | || |||||| Sbjct 4699 TTTCCGATTCACTACCCACAGATCTGGGAGATGTACAAGAAAGCCGAAGCATCCTTCTGG 4640 Query 59622 TCCGTCGAGGAGATTGACCTCGCCGGAGACCTGAAG-GATTGGGACAAGCTCAATTACGA 59680 ||| ||| || | || || | |||| || | || ||||| || ||||| ||| Sbjct 4639 ACCGCCGAAGAAGTAGATCTATCACAAGACG-GACGTGACTGGGAAAATCTCAACGACGG 4581 Query 59681 CGAGCAGCATTTCATCAAGATGGTCCTGGCCTTCTTCGCGGCGAGTGATGGAATTGTGAT 59740 || | || |||||||| ||||| ||||||||||| || ||| ||||| || | Sbjct 4580 AGAACGTCACTTCATCAAACACGTCCTCGCCTTCTTCGCCGCATCTGACGGAATCGTCCT 4521 Query 59741 GGAAAATATAGA--CATGAACTTTTCCAAGGATGTCCAGATTGCCGAGGCCCGGTCGTTC 59798 |||||| | | | || | || ||||| || | |||| || || | ||| Sbjct 4520 CGAAAATCTCGCTTCTCGATTCATGTCA--GATGTACAAGTCTCCGAAGCGCGTGCATTC 4463 Query 59799 TACGCGTATCAG-TCGTTCAACGAGTCTATCCACTCCGAGACGTACTCGCTCATGATCGA 59857 |||| | ||| ||| | ||| |||||| || |||| ||| ||| | |||| Sbjct 4462 TACGGATTTCAAATCGCG-ATTGAGAATATCCATTCTGAGATGTATAGTCTCTTACTCGA 4404 Query 59858 TAAGTTGGTCAAGGATCCGGAAGAGAAGGCTGGTCTGTTCCGTGCCATAGAGACGTCCCC 59917 || | |||| ||| |||||| | | ||| ||||| || | || || || Sbjct 4403 TACTTACATCAAAGATAACAAAGAGAGAGATCATCTATTCCGCGCAGTCGAAACAATTCC 4344 Query 59918 CGCAGTTAAACAAAAAGCAGAATGGGCCATGCAGTGGAT-GAGTCCTGGAGC---ATCAT 59973 ||| | ||||| ||||||| ||| ||||| || |||| | | | | Sbjct 4343 TTGTGTTGCTAAGAAAGCTCAATGGGCTATGACTTGGATCGA----TGGATCTCAAACTT 4288 Query 59974 TTGCACAACGTCTCATAGCTTTTGCATGCGTGGAAGGAATCTTCTTCTCTGGCTCGTTCT 60033 |||| |||| || ||||||| || || || ||||| ||||||||||| || |||| Sbjct 4287 TTGCTGAACGAATCGTAGCTTTCGCTTGTGTTGAAGGTATCTTCTTCTCAGGTAGCTTCT 4228 Query 60034 GTGCTATTTTCTGGCTCAAAAAGCGTGGCCTCATGCCGGGCCTGAGTTTCTCCAACGAGC 60093 || | ||||||||||| || || ||||| |||||||| || | | ||||| ||||| Sbjct 4227 GTTCGATTTTCTGGCTTAAGAAACGTGGACTCATGCCTGGATTAACCTTCTCTAACGAAT 4168 Query 60094 TGATTTCCCGGGACGAGGG 60112 |||| || || ||||| || Sbjct 4167 TGATCTCACGAGACGAAGG 4149 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 546692535184320