Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Arabis_20nordmanniana_20[genbank_20GCA_5F001484925.1_202016-01-04]
267,228 sequences; 342,306,570 total letters
Query= NC_028110.1
Length=171045
Score E
Sequences producing significant alignments: (Bits) Value
seq74857 87.8 2e-12
seq62160 87.8 2e-12
seq11930 87.8 2e-12
seq7096 87.8 2e-12
seq248956 86.0 7e-12
seq227007 86.0 7e-12
seq181523 86.0 7e-12
seq173847 86.0 7e-12
seq121562 86.0 7e-12
seq60360 86.0 7e-12
>seq74857
Length=34108
Score = 87.8 bits (96), Expect = 2e-12
Identities = 65/75 (87%), Gaps = 1/75 (1%)
Strand=Plus/Plus
Query 79625 TGCTTTCGATGAGCTTTGATCTCATTACCTCCCGCTTACTAAACGGGTGCTCT-ACCAAT 79683
||||||| |||| |||| |||| ||||||||||||||||||||||||||| |||||
Sbjct 29027 TGCTTTCATTGAGAGTTGAACTCAAGACCTCCCGCTTACTAAACGGGTGCTCTAACCAAC 29086
Query 79684 TGAGCTACGAAAGCA 79698
||||||| |||||||
Sbjct 29087 TGAGCTATGAAAGCA 29101
>seq62160
Length=26228
Score = 87.8 bits (96), Expect = 2e-12
Identities = 67/78 (86%), Gaps = 1/78 (1%)
Strand=Plus/Plus
Query 79621 AGACTGCTTTCGATGAGCTTTGATCTCATTACCTCCCGCTTACTAAACGGGTGCTCT-AC 79679
||| ||||||| |||| |||| |||| ||||||||||||||||||||||||||| ||
Sbjct 20278 AGATTGCTTTCATTGAGAGTTGAACTCAAGACCTCCCGCTTACTAAACGGGTGCTCTAAC 20337
Query 79680 CAATTGAGCTACGAAAGC 79697
||| ||||||| ||||||
Sbjct 20338 CAACTGAGCTATGAAAGC 20355
>seq11930
Length=7649
Score = 87.8 bits (96), Expect = 2e-12
Identities = 65/75 (87%), Gaps = 1/75 (1%)
Strand=Plus/Minus
Query 79625 TGCTTTCGATGAGCTTTGATCTCATTACCTCCCGCTTACTAAACGGGTGCTCT-ACCAAT 79683
||||||| |||| |||| |||| ||||||||||||||||||||||||||| |||||
Sbjct 2024 TGCTTTCATTGAGAGTTGAACTCAAGACCTCCCGCTTACTAAACGGGTGCTCTAACCAAC 1965
Query 79684 TGAGCTACGAAAGCA 79698
||||||| |||||||
Sbjct 1964 TGAGCTATGAAAGCA 1950
>seq7096
Length=7907
Score = 87.8 bits (96), Expect = 2e-12
Identities = 67/78 (86%), Gaps = 1/78 (1%)
Strand=Plus/Plus
Query 79621 AGACTGCTTTCGATGAGCTTTGATCTCATTACCTCCCGCTTACTAAACGGGTGCTCT-AC 79679
||| ||||||| |||| |||| |||| ||||||||||||||||||||||||||| ||
Sbjct 7158 AGATTGCTTTCATTGAGAGTTGAACTCAAGACCTCCCGCTTACTAAACGGGTGCTCTAAC 7217
Query 79680 CAATTGAGCTACGAAAGC 79697
||| ||||||| ||||||
Sbjct 7218 CAACTGAGCTATGAAAGC 7235
>seq248956
Length=3673
Score = 86.0 bits (94), Expect = 7e-12
Identities = 64/74 (86%), Gaps = 1/74 (1%)
Strand=Plus/Minus
Query 79625 TGCTTTCGATGAGCTTTGATCTCATTACCTCCCGCTTACTAAACGGGTGCTCT-ACCAAT 79683
|||| ||| |||| |||| |||| ||||||||||||||||||||||||||| |||||
Sbjct 364 TGCTCTCGTTGAGAGTTGAACTCAAGACCTCCCGCTTACTAAACGGGTGCTCTAACCAAC 305
Query 79684 TGAGCTACGAAAGC 79697
|||||||||| |||
Sbjct 304 TGAGCTACGAGAGC 291
>seq227007
Length=8561
Score = 86.0 bits (94), Expect = 7e-12
Identities = 64/74 (86%), Gaps = 1/74 (1%)
Strand=Plus/Plus
Query 79625 TGCTTTCGATGAGCTTTGATCTCATTACCTCCCGCTTACTAAACGGGTGCTCT-ACCAAT 79683
||||||| |||| |||| |||| ||||||||||||||||||||||||||| |||||
Sbjct 449 TGCTTTCATTGAGAGTTGAACTCAAGACCTCCCGCTTACTAAACGGGTGCTCTAACCAAC 508
Query 79684 TGAGCTACGAAAGC 79697
||||||| ||||||
Sbjct 509 TGAGCTATGAAAGC 522
>seq181523
Length=1325
Score = 86.0 bits (94), Expect = 7e-12
Identities = 64/74 (86%), Gaps = 1/74 (1%)
Strand=Plus/Minus
Query 79625 TGCTTTCGATGAGCTTTGATCTCATTACCTCCCGCTTACTAAACGGGTGCTCT-ACCAAT 79683
||||||| |||| |||| |||| ||||||||||||||||||||||||||| |||||
Sbjct 1325 TGCTTTCATTGAGAGTTGAACTCAAGACCTCCCGCTTACTAAACGGGTGCTCTAACCAAC 1266
Query 79684 TGAGCTACGAAAGC 79697
||||||| ||||||
Sbjct 1265 TGAGCTATGAAAGC 1252
>seq173847
Length=25717
Score = 86.0 bits (94), Expect = 7e-12
Identities = 66/77 (86%), Gaps = 1/77 (1%)
Strand=Plus/Plus
Query 79625 TGCTTTCGATGAGCTTTGATCTCATTACCTCCCGCTTACTAAACGGGTGCTCT-ACCAAT 79683
|||||||| |||| |||| |||| ||||||||||||||||||||||||||| | |||
Sbjct 3210 TGCTTTCGTTGAGAGTTGAACTCAAAACCTCCCGCTTACTAAACGGGTGCTCTAATCAAA 3269
Query 79684 TGAGCTACGAAAGCAAA 79700
|||||||||| ||| ||
Sbjct 3270 TGAGCTACGAGAGCTAA 3286
>seq121562
Length=1679
Score = 86.0 bits (94), Expect = 7e-12
Identities = 64/74 (86%), Gaps = 1/74 (1%)
Strand=Plus/Plus
Query 79625 TGCTTTCGATGAGCTTTGATCTCATTACCTCCCGCTTACTAAACGGGTGCTCT-ACCAAT 79683
|||| ||| |||| |||| |||| ||||||||||||||||||||||||||| |||||
Sbjct 1324 TGCTCTCGTTGAGAGTTGAACTCAAGACCTCCCGCTTACTAAACGGGTGCTCTAACCAAC 1383
Query 79684 TGAGCTACGAAAGC 79697
|||||||||| |||
Sbjct 1384 TGAGCTACGAGAGC 1397
>seq60360
Length=5555
Score = 86.0 bits (94), Expect = 7e-12
Identities = 64/74 (86%), Gaps = 1/74 (1%)
Strand=Plus/Plus
Query 79625 TGCTTTCGATGAGCTTTGATCTCATTACCTCCCGCTTACTAAACGGGTGCTCT-ACCAAT 79683
|||| ||| |||| |||| |||| ||||||||||||||||||||||||||| |||||
Sbjct 801 TGCTCTCGTTGAGAGTTGAACTCAAGACCTCCCGCTTACTAAACGGGTGCTCTAACCAAC 860
Query 79684 TGAGCTACGAAAGC 79697
|||||||||| |||
Sbjct 861 TGAGCTACGAGAGC 874
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 545388107034400
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |