Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Arabis_20nordmanniana_20[genbank_20GCA_5F001484925.1_202016-01-04]
267,228 sequences; 342,306,570 total letters
Query= NC_028448.1
Length=167467
Score E
Sequences producing significant alignments: (Bits) Value
seq26767 212 7e-50
seq249645 109 6e-19
seq127984 89.7 5e-13
>seq26767
Length=1149
Score = 212 bits (234), Expect = 7e-50
Identities = 315/447 (70%), Gaps = 0/447 (0%)
Strand=Plus/Plus
Query 81493 CATCAAATCATTCAGCTGAACACCATAATCCATATGACGAATGCGGTTTTCTTCTACGCC 81552
|||||| | ||| | || || ||||||| | ||||| | | |||||||| | |||
Sbjct 33 CATCAATTTATTAATTTGTACTGCATAATCAACGTGACGTACTCTATTTTCTTCAATGCC 92
Query 81553 TTTGTTATTTTTCAAAACGAGAAGATTTTCAACTTCCAAATGCCAAATAGGATAATAAGC 81612
| |||||||| ||||| | | | |||||| ||| |||||||| || |||||| |
Sbjct 93 CCTATTATTTTTTAAAACTAATAAACTTTCAATTTCAAAATGCCATATTGGATAAAATAT 152
Query 81613 AGTAGCAGCGCCGCCACGAATTCCACCCTGTGAACATGATTTAACTGCAGTCTGAAAATG 81672
||| || || || || | || ||| || || ||||| ||||| || ||| | ||||||||
Sbjct 153 AGTTGCCGCTCCACCTCTAACTCCTCCTTGAGAACAGGATTTTACAGCACTTTGAAAATG 212
Query 81673 TTTCCAAAAAGGAATAACACCAGTATGGCGTACTTCACCCATGCCAATCTTAGAACCTTC 81732
||| ||||||||||| ||||||||| | |||| || | | ||| | |||| |
Sbjct 213 TTTATAAAAAGGAATACAACCAGTATGAAATGCTTCGCCATTTCTAATAGGACTACCTAC 272
Query 81733 AGCACGAATCATACCTACGTTAATTCCAATTCCAGCGCGTTTAGAAATATATTCAACAAT 81792
|||||||| | || | ||||| |||||||| || |||| ||||| ||||| |||||
Sbjct 273 TGCACGAATTTTTCCAGCATTAATACCAATTCCTGCTCGTTGAGAAACATATTTTACAAT 332
Query 81793 TGAAGCAGAAGCTTTATTAATTGACTTCAATGAATCACCAGCTTCAATAACAACGCATGA 81852
||| || || ||||| || | | |||| || |||||| | ||| |||||
Sbjct 333 AGAACTAGTAGTAGCGTTAATAGAATCTAGATTATCATCACATTCAATTAAAACACATGA 392
Query 81853 ACTAAACTGTCGAGTCGGAGTACGGCAACCAGCCATAATAGGAGTTGGCAATGAAATCTG 81912
||||| |||||||| ||||| | |||| |||||| || || || || ||||| |
Sbjct 393 GCTAAATTGTCGAGTAGGAGTTCTAACTCCAGACATAATTGGTGTCGGTAAAGAAATTTT 452
Query 81913 TCGAGTAGATACTGCTTCATAAAAACG 81939
||| || | || | |||||||||
Sbjct 453 GAAAGTTGAAATGGCATTATAAAAACG 479
>seq249645
Length=476466
Score = 109 bits (120), Expect = 6e-19
Identities = 268/405 (66%), Gaps = 6/405 (1%)
Strand=Plus/Minus
Query 81508 CTGAACACCATAATCCATATGACGAATGCGGTTTTCTTCTACGCCTTTGTTATTTTTCAA 81567
||| || || || ||||||||||| | ||||| ||||| || || ||||||||| |
Sbjct 264951 CTGTACGCCGTAGTCCATATGACGGACACGGTTGTCTTCAACACCGCGGTTATTTTTGAG 264892
Query 81568 AACGAGAAGATTTTCAACTTCCAAATGCCAAATAGGATAATAAGCAGTAGCAGCGCCGCC 81627
|| || | |||||||| |||||||| | || || | || ||||| |||||
Sbjct 264891 TACCAGTAATGACTCAACTTCTAAATGCCATAGTGGGTAGAACAACGTCGCAGCACCGCC 264832
Query 81628 ACGAATTCCACCCTGTGAACATGATTTAACTGCAGTCTGAAAATGTTTCCAAAAAGGAAT 81687
||| | ||||| ||||| || ||||||| || || || || ||| ||||||||||
Sbjct 264831 ACGTACGCCACCTTGTGAGCAGCATTTAACGGCCGTTTGGAACAATTTATAAAAAGGAAT 264772
Query 81688 AACACCAGTATGGCGTACTTCACCCATGCCAATCTTAG---AACCTTCAGCACGAATCAT 81744
| |||||||| || ||||||| |||| ||| ||| ||||| ||
Sbjct 264771 ACAGCCAGTATGCTGTGCTTCACC---GCCACGGATAGGGCTACCAAGGGCACGGATACG 264715
Query 81745 ACCTACGTTAATTCCAATTCCAGCGCGTTTAGAAATATATTCAACAATTGAAGCAGAAGC 81804
|||| |||| || || || ||||| || | || | ||| || || | || |
Sbjct 264714 ACCTGCGTTGATGCCGATACCAGCACGCTGTGACACATAGCGTACGATGGCGCTAGTGGT 264655
Query 81805 TTTATTAATTGACTTCAATGAATCACCAGCTTCAATAACAACGCATGAACTAAACTGTCG 81864
|| || || | || ||||||| ||| || | ||||| || |||||||| ||
Sbjct 264654 GGCGTTGATAGAGTCTAAGCTATCACCACATTCGATTAAGACGCACGAGCTAAACTGACG 264595
Query 81865 AGTCGGAGTACGGCAACCAGCCATAATAGGAGTTGGCAATGAAAT 81909
| || ||||| ||| | ||| || || ||||| | ||| ||
Sbjct 264594 CGATGGCGTACGCACACCTGACATGATTGGCGTTGGTAGTGAGAT 264550
Score = 84.2 bits (92), Expect = 2e-11
Identities = 70/86 (81%), Gaps = 0/86 (0%)
Strand=Plus/Minus
Query 80552 TCAATATTGGGCACGACTTGATTAAAGGAGCCCTCTTTTGATTCTTTAACAGAGACTGGT 80611
||||| | ||||||||||| || ||| ||| ||||||||| |||| | |||||| |
Sbjct 265916 TCAATCTCAGGCACGACTTGCTTTAAGATGCCATCTTTTGATGCTTTGATAGAGACCAGA 265857
Query 80612 CCACGTGGAGGCTCGATACCGTTTGT 80637
|||||||| |||||||||||||| ||
Sbjct 265856 CCACGTGGTGGCTCGATACCGTTGGT 265831
>seq127984
Length=21361
Score = 89.7 bits (98), Expect = 5e-13
Identities = 69/82 (84%), Gaps = 0/82 (0%)
Strand=Plus/Minus
Query 12816 TAAATTGGAGCGGATAATGAGAATCGAACTCACATCATCAGATTGGAAGTCTGAGGTAAT 12875
||||||||||||| | | ||||||||||||| ||||||||| ||||||| ||||||| |
Sbjct 19915 TAAATTGGAGCGGGTGAAGAGAATCGAACTCTCATCATCAGCTTGGAAGGCTGAGGTTTT 19856
Query 12876 ACCATTATACGATATCCGCAAA 12897
|||| || || | | |||||||
Sbjct 19855 ACCACTAAACTACACCCGCAAA 19834
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 533976752705760
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |