Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Arabis_20nordmanniana_20[genbank_20GCA_5F001484925.1_202016-01-04] 267,228 sequences; 342,306,570 total letters Query= NC_028659.1 Length=142987 Score E Sequences producing significant alignments: (Bits) Value seq158858 98.7 9e-16 seq6041 84.2 2e-11 >seq158858 Length=235449 Score = 98.7 bits (108), Expect = 9e-16 Identities = 159/226 (70%), Gaps = 2/226 (1%) Strand=Plus/Minus Query 69245 GTTGCTTTCACAGCCATACCCAGTGAATCACGGGTTGTGTACTGGGTGGTAAAGGAACCA 69304 || ||||||| ||| | || || ||||| || || || ||| ||| | || || Sbjct 214841 GTAGCTTTCATAGCAAACCCTAGAGAATCGCGAGTCTGATATTGGAAAGTATAAGATCCC 214782 Query 69305 ACACCGTACACGATATTGCTGGATGCAAAGCCTTTATCTCTCAGACGT-TCAAAGATGTC 69363 || ||| | || | || | || ||||||||||| ||| || || | |||| || | Sbjct 214781 ACGCCGAAAACAACGTTTGTTGAAGCAAAGCCTTTTTCT-TCTAACTTCTCAACAATAGC 214723 Query 69364 TTTTGCACGCGCGACAGTGATAGAATCACCGTAGATCAGACCAATATGACTATCAAGAAC 69423 |||||||||| | | ||| ||||| ||||| ||||| |||||||||| |||| | | Sbjct 214722 TTTTGCACGCTCAAGAGTAATAGAGTCACCATAGATTGCACCAATATGAGTATCTAATAG 214663 Query 69424 CTTATAGCCCTTGGAATTAACTTCACCACCGAAAATATCCCATAAA 69469 ||||| ||||| | ||| | ||||| || |||||||||||| Sbjct 214662 TTTATAACCCTTCTCAGTAATTGTTCCACCAAAGATATCCCATAAA 214617 >seq6041 Length=422222 Score = 84.2 bits (92), Expect = 2e-11 Identities = 202/303 (67%), Gaps = 2/303 (1%) Strand=Plus/Minus Query 101358 ATGAAAGTATATCTGGTAGGTGGCGCTGTTCGTGATGGTCTGCTGGGTCGTCCAGTTCAT 101417 ||| || | ||||| || || || ||||||||||| ||| | || ||||| ||| | Sbjct 86389 ATGCAAATTTATCTCGTTGGCGGTGCTGTTCGTGACCATCTATTAGGCCGTCCTGTTAAA 86330 Query 101418 GACCGTGATTACGTGGTTGTGGGTGCAACACACGAAGAGATGATTGAAAAAGGTTTCACC 101477 ||| |||| || || || ||||| || || ||| | || ||| ||| Sbjct 86329 GACAAAGATTTTGTCGTGGTTGGTGCCACGGTGTCTGAAATGCTGGACGCAGGCTTCCAG 86270 Query 101478 CAGGTTGGCGCTGCTTTCCCGGTGTACTTGCATCCTGAAACCAAAGAAGAATACGCACTG 101537 || || ||||| | ||| || |||| ||||||||| | | || || ||||||||| Sbjct 86269 CAAGTGGGCGCAGATTTTCCTGTGTTTTTGCATCCTATCAGTCACGATGAGTACGCACTG 86210 Query 101538 GCCCGTACTGAGCGTAAAACTGGTGAAGGCCATACTGGCTTT-GAGACCTTCTTCAGCCC 101596 || ||||| || ||||| || | ||| || |||||| | | || | |||||| Sbjct 86209 GCTCGTACAGAACGTAAGCAAGGCGTCGGCTATCAAGGCTTTAGTGTCCAT-GCCAGCCC 86151 Query 101597 GGATGTAACTCTGGAAGAGGATTTATCGCGTCGTGACCTGACGATCAATGCGATGGCTAA 101656 | || | | |||| ||| | ||||||||| |||| |||||||| ||||| | Sbjct 86150 TAACGTTAGCTTAAAAGACGATATGCAGCGTCGTGATTTGACCATCAATGCAATGGCCAT 86091 Query 101657 AGA 101659 ||| Sbjct 86090 AGA 86088 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 455902422363360