Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Arabis_20nordmanniana_20[genbank_20GCA_5F001484925.1_202016-01-04]
267,228 sequences; 342,306,570 total letters
Query= NC_028672.1
Length=149732
Score E
Sequences producing significant alignments: (Bits) Value
seq249645 172 5e-38
>seq249645
Length=476466
Score = 172 bits (190), Expect = 5e-38
Identities = 266/380 (70%), Gaps = 0/380 (0%)
Strand=Plus/Minus
Query 24282 CATGATGTCGTCAAAGACGATCGACGGATCTGCCAGGATGTTACGGATGATATGGGTGTA 24341
||| || || ||||||| || ||||| | ||| ||||| |||||||| || ||
Sbjct 268610 CATAATATCATCAAAGATAATATTTGGATCATTGACGATATTACGAATGATATGCGTATA 268551
Query 24342 TGAGCGAGAGTGGATAGTCTCACTGAACGCCCAAGTCTCTACCCATGTTTCCAGGGTTGT 24401
||| ||||| || |||||| ||||| ||| ||||| | ||| || || || |
Sbjct 268550 GCTGCGTGAGTGAATGGTCTCAGAGAACGACCATGTCTCAATCCACGTCTCAAGCTCAGG 268491
Query 24402 GTCGGACACGATCGGGAGCAGAACTGCGTTCGGCCCACGGCCCTGTACAGAATCCAGAAG 24461
| ||||| | ||| | || || |||| || | ||| || || | ||| || || ||
Sbjct 268490 GATAGACACTAGCGGCAATAGTACCACGTTTGGACTACGACCTTGGATAGAGTCGAGTAG 268431
Query 24462 GATCTGGTACTTCAGGTTGCTGATGAAGATGTGCTTCTCGTGATCCGGCAGATTCATGTA 24521
| |||| ||||| |||||||| | || ||||||| |||||| | || || | |
Sbjct 268430 GGTCTGATACTTAAGGTTGCTCAAAAATATGTGCTGCTCGTGGGATGATAGGTTGCTAAA 268371
Query 24522 GTCGATACGGTCACGGGTCACGTTAACTTCTTCCGGACGCCAGAAGAACGCCAGTTGCTT 24581
|| |||||||| || | ||| | ||||||||| |||||||| ||||||| || |||||
Sbjct 268370 ATCCATACGGTCGCGTGACACATCAACTTCTTCTGGACGCCAAAAGAACGACAACTGCTT 268311
Query 24582 CTCGATCAGCTTCTCGAACTTGGCGTGTTTCTGCTGGTCATAGCGAGAAACGTTCGGTGT 24641
|| |||| | ||| || | | |||||| || ||||||||||| | ||||| |
Sbjct 268310 TTCAATCAATTGCTCAAAGATTGGGTGTTTTTGTTGGTCATAGCGCGCTACGTTGACGGG 268251
Query 24642 CTCGCCGAGGAACATCGGCT 24661
|| || | |||||||||||
Sbjct 268250 CTGACCAAAGAACATCGGCT 268231
Score = 111 bits (122), Expect = 2e-19
Identities = 247/368 (67%), Gaps = 6/368 (2%)
Strand=Plus/Minus
Query 23775 CAGGCCAACCGCTCGCATACGCTGGTCGGTGATGTAGTCGATGTAACCGTCCAGCATACC 23834
|| ||| |||||| |||||| || |||||||| ||||| || | ||| || |
Sbjct 269150 CAAGCCGACCGCTTCCATACGTAAGTTAGTGATGTATTCGATATATTGGCACAGAATGTC 269091
Query 23835 TTTGTTCAGGCCGATCATCGAACCGTCTTTGAACAGGAAGCTGCCCCAGTCTTTCTCCTG 23894
|||||| || || |||||||| || ||||||||||| ||| |||| ||||| || ||
Sbjct 269090 TTTGTTTAGACCAATCATCGAGCCATCTTTGAACAGATAGCCTGCCCATTCTTTTTCTTG 269031
Query 23895 CACCGATGCGTCGATAAAGCCCTGTCGTGCCTCTTCGTAGCAATCTTCTGCCACACGTGC 23954
| | | || | | ||| | || || ||| | | || ||||| || |
Sbjct 269030 CTCAGCAGCTTTGCGGAAGA--TTTCAATACT-TTCATCGAAACACTCTGCGGCAATCTC 268974
Query 23955 AAACAGGTCACCTTCGTTAC---CGTTCTGCATTTCTTTCAGCATATACTGAGTTCCGGA 24011
| || ||| |||| || |||| |||| || ||||||| ||| || || |
Sbjct 268973 GACCATCTCAGGATCGTCACGACCGTTGCGCATGAGGTTTAGCATATGCTGCGTACCTGT 268914
Query 24012 CAAATGCAAGGCTTCATCACGAGCAATCAGTTCAATAATGTTGGTGTTACCCAGCATTAC 24071
|||||||| |||||||||||||| || || | ||| || |||| ||||| ||| |
Sbjct 268913 CAAATGCAGCGCTTCATCACGAGCGATGAGCTTAATGATTTTGGCATTACCTTCCATCAA 268854
Query 24072 GCCGCGCTCACCGAAAGCGAAGGAGCAGGCGAAGCTCACGTAGAAACGGATCGCTTCCAG 24131
||||||| | || || || ||||| || || || |||||||| || ||||| ||
Sbjct 268853 TTTGCGCTCAGCAAACGCAAACGAGCAAGCAAACGAGACATAGAAACGAATGGCTTCTAG 268794
Query 24132 TGCATTGA 24139
| ||||
Sbjct 268793 GACGTTGA 268786
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 477414324248960
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |