Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Arabis_20nordmanniana_20[genbank_20GCA_5F001484925.1_202016-01-04] 267,228 sequences; 342,306,570 total letters Query= NC_028683.1 Length=177643 Score E Sequences producing significant alignments: (Bits) Value seq249645 107 2e-18 seq6041 100 3e-16 seq46855 82.4 9e-11 >seq249645 Length=476466 Score = 107 bits (118), Expect = 2e-18 Identities = 297/449 (66%), Gaps = 25/449 (6%) Strand=Plus/Minus Query 147784 TTAATCTGGACGCCATAATCTAAGTGACGAATACGGTTCTCGTCTACACCTTTATTGTTT 147843 |||| ||| ||||| || || | ||||| | |||||| || || ||||| || ||| Sbjct 264955 TTAA-CTGTACGCCGTAGTCCATATGACGGACACGGTTGTCTTCAACACCGCGGTTATTT 264897 Query 147844 TTCAGAACGAGAAGGTTTTCGACTTCTAAATGCCAAATTGGATAGTACAATGTTGCTGCA 147903 || || || || | || |||||||||||||| | ||| ||| |||| || || ||| Sbjct 264896 TTGAGTACCAGTAATGACTCAACTTCTAAATGCCATAGTGGGTAGAACAACGTCGCAGCA 264837 Query 147904 CCACCACGTACACCACCTTGGGAACATGATTTAACAGAAGCTTGAATAGTTTTCCAGAAT 147963 || |||||||| |||||||| || || ||||||| | | ||| | ||| | || Sbjct 264836 CCGCCACGTACGCCACCTTGTGAGCAGCATTTAACGGCCGTTTGGAACAATTTATAAAAA 264777 Query 147964 GGAATCACGCCTGTGTGCTTAACTTCACCATGTCCAATCTTAG---AACCTTCTGCACGA 148020 ||||| ||| || |||| ||||||| ||| ||| ||| ||||| Sbjct 264776 GGAATACAGCCAGTATGCTGTGCTTCACC---GCCACGGATAGGGCTACCAAGGGCACGG 264720 Query 148021 ATCATACCAGCGTTAACACCAATACCAGCTCGTTTACTGATGTACTTA----ATGATTGA 148076 || ||| ||||| | || |||||||| || ||| || || | ||| | Sbjct 264719 ATACGACCTGCGTTGATGCCGATACCAGCACG----CTGTGACACATAGCGTACGATGGC 264664 Query 148077 AGCATTTGTGGTATTAATCGAATCCAGTGAATCACCACCTTCAATAACAACACAACTCGA 148136 | | |||| || || || || | |||||||| ||| || | || || ||| Sbjct 264663 GCTAGTGGTGGCGTTGATAGAGTCTAAGCTATCACCACATTCGATTAAGACGCA---CGA 264607 Query 148137 G---AATTGACGAGTCGGAGTACGAACACCTGCCATAATTGGAGTTGGCAGTGAAATCTG 148193 | || ||||| | || ||||| ||||||| ||| ||||| ||||| ||||| || | Sbjct 264606 GCTAAACTGACGCGATGGCGTACGCACACCTGACATGATTGGCGTTGGTAGTGAGATTT- 264548 Query 148194 ACGTTTACTTACG--GCATCATAGAAGCG 148220 | | || | | |||||||||||||| Sbjct 264547 -TGAATTCTGAGGTCGCATCATAGAAGCG 264520 >seq6041 Length=422222 Score = 100 bits (110), Expect = 3e-16 Identities = 134/183 (73%), Gaps = 5/183 (3%) Strand=Plus/Plus Query 139402 ATGTCAAATGAGCCATTCAATTCTGGGTCGTTAATGAAACCTTTCCAACCTACAGTTGTT 139461 |||||||| | |||||| || ||||| || || | ||| ||||| || ||||| || Sbjct 137777 ATGTCAAAGCTGTCATTCATATCAGGGTCATTGATCATACCCTTCCAGCCGACAGTGGTA 137836 Query 139462 CTTGGTTTCTCAAAATAAACACGCATAACCA-AAAGAAGAT---TTGGAAATTGTTTTTG 139517 | |||||| ||||||||||| ||||| || | ||||| | | || | | | |||| Sbjct 137837 CGTGGTTTTTCAAAATAAACGCGCATCACAACAAAGACGCTGTCTTCG-ATCTCTTTTGC 137895 Query 139518 TACTTCGGCTAAACGTTCGCCGTATTCGAGAGCAGCTTTAGGGTCATGAATTGAACAAGG 139577 | | |||| ||||| ||| | |||||| |||||||||| ||| || || || ||||| Sbjct 137896 CAATACGGCCAAACGATCGGCATATTCGTGAGCAGCTTTGATGTCGTGGATAGAGCAAGG 137955 Query 139578 GCC 139580 ||| Sbjct 137956 GCC 137958 >seq46855 Length=2401 Score = 82.4 bits (90), Expect = 9e-11 Identities = 144/209 (69%), Gaps = 3/209 (1%) Strand=Plus/Minus Query 139414 CCATTCAATTCTGGGTCGTTAATGAAACCTTTCCAACCTACAGTTGTTCTTGGTTTCTCA 139473 ||||| || ||||| || ||| || ||||||||||| ||| |||||||||||| ||| Sbjct 461 CCATTTAAATCTGGATCTGAAATTAATCCTTTCCAACCAACAACTGTTCTTGGTTTTTCA 402 Query 139474 AAATAAACACGC---ATAACCAAAAGAAGATTTGGAAATTGTTTTTGTACTTCGGCTAAA 139530 ||||| |||| |||| |||| ||| | | ||| | ||| ||| ||| Sbjct 401 AAATATGTACGCATTATAATTTCAAGACGATCTTTATATTTTACGCGTAATTCATATAAT 342 Query 139531 CGTTCGCCGTATTCGAGAGCAGCTTTAGGGTCATGAATTGAACAAGGGCCTACAACAATA 139590 | | | ||||| | ||||| |||| ||||||| |||||| || |||| |||| | Sbjct 341 CTATGTGCATATTCTACTGCAGCAATAGGATCATGAACTGAACATGGTCCTATGACAACA 282 Query 139591 ATTTTGCGTGGGTCTTCGCCATTCATAAT 139619 | | | | ||||| ||| ||||||| Sbjct 281 AGTAATCTTAAATCTTCTCCAGTCATAAT 253 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 566431180220640