Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Arabis_20nordmanniana_20[genbank_20GCA_5F001484925.1_202016-01-04]
267,228 sequences; 342,306,570 total letters
Query= NC_028683.1
Length=177643
Score E
Sequences producing significant alignments: (Bits) Value
seq249645 107 2e-18
seq6041 100 3e-16
seq46855 82.4 9e-11
>seq249645
Length=476466
Score = 107 bits (118), Expect = 2e-18
Identities = 297/449 (66%), Gaps = 25/449 (6%)
Strand=Plus/Minus
Query 147784 TTAATCTGGACGCCATAATCTAAGTGACGAATACGGTTCTCGTCTACACCTTTATTGTTT 147843
|||| ||| ||||| || || | ||||| | |||||| || || ||||| || |||
Sbjct 264955 TTAA-CTGTACGCCGTAGTCCATATGACGGACACGGTTGTCTTCAACACCGCGGTTATTT 264897
Query 147844 TTCAGAACGAGAAGGTTTTCGACTTCTAAATGCCAAATTGGATAGTACAATGTTGCTGCA 147903
|| || || || | || |||||||||||||| | ||| ||| |||| || || |||
Sbjct 264896 TTGAGTACCAGTAATGACTCAACTTCTAAATGCCATAGTGGGTAGAACAACGTCGCAGCA 264837
Query 147904 CCACCACGTACACCACCTTGGGAACATGATTTAACAGAAGCTTGAATAGTTTTCCAGAAT 147963
|| |||||||| |||||||| || || ||||||| | | ||| | ||| | ||
Sbjct 264836 CCGCCACGTACGCCACCTTGTGAGCAGCATTTAACGGCCGTTTGGAACAATTTATAAAAA 264777
Query 147964 GGAATCACGCCTGTGTGCTTAACTTCACCATGTCCAATCTTAG---AACCTTCTGCACGA 148020
||||| ||| || |||| ||||||| ||| ||| ||| |||||
Sbjct 264776 GGAATACAGCCAGTATGCTGTGCTTCACC---GCCACGGATAGGGCTACCAAGGGCACGG 264720
Query 148021 ATCATACCAGCGTTAACACCAATACCAGCTCGTTTACTGATGTACTTA----ATGATTGA 148076
|| ||| ||||| | || |||||||| || ||| || || | ||| |
Sbjct 264719 ATACGACCTGCGTTGATGCCGATACCAGCACG----CTGTGACACATAGCGTACGATGGC 264664
Query 148077 AGCATTTGTGGTATTAATCGAATCCAGTGAATCACCACCTTCAATAACAACACAACTCGA 148136
| | |||| || || || || | |||||||| ||| || | || || |||
Sbjct 264663 GCTAGTGGTGGCGTTGATAGAGTCTAAGCTATCACCACATTCGATTAAGACGCA---CGA 264607
Query 148137 G---AATTGACGAGTCGGAGTACGAACACCTGCCATAATTGGAGTTGGCAGTGAAATCTG 148193
| || ||||| | || ||||| ||||||| ||| ||||| ||||| ||||| || |
Sbjct 264606 GCTAAACTGACGCGATGGCGTACGCACACCTGACATGATTGGCGTTGGTAGTGAGATTT- 264548
Query 148194 ACGTTTACTTACG--GCATCATAGAAGCG 148220
| | || | | ||||||||||||||
Sbjct 264547 -TGAATTCTGAGGTCGCATCATAGAAGCG 264520
>seq6041
Length=422222
Score = 100 bits (110), Expect = 3e-16
Identities = 134/183 (73%), Gaps = 5/183 (3%)
Strand=Plus/Plus
Query 139402 ATGTCAAATGAGCCATTCAATTCTGGGTCGTTAATGAAACCTTTCCAACCTACAGTTGTT 139461
|||||||| | |||||| || ||||| || || | ||| ||||| || ||||| ||
Sbjct 137777 ATGTCAAAGCTGTCATTCATATCAGGGTCATTGATCATACCCTTCCAGCCGACAGTGGTA 137836
Query 139462 CTTGGTTTCTCAAAATAAACACGCATAACCA-AAAGAAGAT---TTGGAAATTGTTTTTG 139517
| |||||| ||||||||||| ||||| || | ||||| | | || | | | ||||
Sbjct 137837 CGTGGTTTTTCAAAATAAACGCGCATCACAACAAAGACGCTGTCTTCG-ATCTCTTTTGC 137895
Query 139518 TACTTCGGCTAAACGTTCGCCGTATTCGAGAGCAGCTTTAGGGTCATGAATTGAACAAGG 139577
| | |||| ||||| ||| | |||||| |||||||||| ||| || || || |||||
Sbjct 137896 CAATACGGCCAAACGATCGGCATATTCGTGAGCAGCTTTGATGTCGTGGATAGAGCAAGG 137955
Query 139578 GCC 139580
|||
Sbjct 137956 GCC 137958
>seq46855
Length=2401
Score = 82.4 bits (90), Expect = 9e-11
Identities = 144/209 (69%), Gaps = 3/209 (1%)
Strand=Plus/Minus
Query 139414 CCATTCAATTCTGGGTCGTTAATGAAACCTTTCCAACCTACAGTTGTTCTTGGTTTCTCA 139473
||||| || ||||| || ||| || ||||||||||| ||| |||||||||||| |||
Sbjct 461 CCATTTAAATCTGGATCTGAAATTAATCCTTTCCAACCAACAACTGTTCTTGGTTTTTCA 402
Query 139474 AAATAAACACGC---ATAACCAAAAGAAGATTTGGAAATTGTTTTTGTACTTCGGCTAAA 139530
||||| |||| |||| |||| ||| | | ||| | ||| ||| |||
Sbjct 401 AAATATGTACGCATTATAATTTCAAGACGATCTTTATATTTTACGCGTAATTCATATAAT 342
Query 139531 CGTTCGCCGTATTCGAGAGCAGCTTTAGGGTCATGAATTGAACAAGGGCCTACAACAATA 139590
| | | ||||| | ||||| |||| ||||||| |||||| || |||| |||| |
Sbjct 341 CTATGTGCATATTCTACTGCAGCAATAGGATCATGAACTGAACATGGTCCTATGACAACA 282
Query 139591 ATTTTGCGTGGGTCTTCGCCATTCATAAT 139619
| | | | ||||| ||| |||||||
Sbjct 281 AGTAATCTTAAATCTTCTCCAGTCATAAT 253
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 566431180220640
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |