Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Arabis_20nordmanniana_20[genbank_20GCA_5F001484925.1_202016-01-04] 267,228 sequences; 342,306,570 total letters Query= NC_028748.2 Length=51366 Score E Sequences producing significant alignments: (Bits) Value seq255890 313 8e-81 seq123612 185 3e-42 seq56095 80.6 9e-11 >seq255890 Length=19928 Score = 313 bits (346), Expect = 8e-81 Identities = 270/326 (83%), Gaps = 14/326 (4%) Strand=Plus/Plus Query 42122 TAAAAGAGCAGCTAGCAAAAGCTAACTGCTCATCTCCAAGGGGGAACAAGGAGAAAG-TA 42180 ||||| |||||||||||| |||||||||||||| | | ||| | | |||||||| || Sbjct 1944 TAAAAAAGCAGCTAGCAATAGCTAACTGCTCATAT---AAGGGAATC--GGAGAAAGATA 1998 Query 42181 ACTTAATGGGTTGTCTACAGTATTGACGGAATATTGAGTTTT-ATTCAGGAGG-AGAGAG 42238 || ||| |||| | | |||| |||||||||| |||||| ||||| || |||| | Sbjct 1999 ACC--ATG---TGTCCATATTATTAACGGAATATTAAGTTTTTATTCAAAGGGTAGAGGG 2053 Query 42239 AAATGGAAGaaaaaaaGGAACCTAAAATGGTATCTATGGCATGTTTCGGGTGGAATAAAG 42298 |||| ||||||| ||||||||| |||||| ||||||||||||||| ||||||||| |||| Sbjct 2054 AAATAGAAGAAAGAAAGGAACCAAAAATG-TATCTATGGCATGTTACGGGTGGAACAAAG 2112 Query 42299 AAAAACAATGCGTAGAGTTCCAACTGTTAATAAATGAAGAGATATATGTAATGCCAGTGT 42358 |||||| ||| |||||||||||||| |||| |||||||||||||| |||||||||| ||| Sbjct 2113 AAAAACGATGTGTAGAGTTCCAACTATTAAGAAATGAAGAGATATTTGTAATGCCAATGT 2172 Query 42359 CTAAGAGGGATGTACACGGCATGGAAACATTTTTCCTGGTTAATGAAAAATAACTGAACA 42418 ||||| ||||||| |||||||| |||||| ||| ||||||||||||||||||||| Sbjct 2173 ATAAGAAGGATGTAAGAAGCATGGAACAATTTTTTCTGATTAATGAAAAATAACTGAACA 2232 Query 42419 AAATAATCCTTTGGATAGAAAGTGAG 42444 |||||||| ||| | ||||| |||| Sbjct 2233 AAATAATCTTTTTAACAGAAAATGAG 2258 >seq123612 Length=52173 Score = 185 bits (204), Expect = 3e-42 Identities = 155/184 (84%), Gaps = 6/184 (3%) Strand=Plus/Minus Query 29144 ATAACAAATTCAGCTACAACTATCTTGTCATATTTTGTCGAAAAAGAATTAAAAAAGCCC 29203 |||||| |||||| |||| | | |||||||||||||| | | | || |||||||||| Sbjct 40440 ATAACAGATTCAGTTACATCATTTTTGTCATATTTTGTTGGAT--GTAT-AAAAAAGCCC 40384 Query 29204 CTAACAAATTGTTAAGGGCTGCGGAATAGTAC-CGCAATCTAGGGAGTCG-CCCTAGTTG 29261 |||||||||||||||||| || || || ||| ||||||||| |||||| ||||| || Sbjct 40383 CTAACAAATTGTTAAGGGGTGTGGCATT-TACTCGCAATCTATGGAGTCCACCCTAACTG 40325 Query 29262 TGGATGATAAACTGCAAACGTTTGCAATGGCATGAGCTTTCGTAGCAGTTAGTCAAAGCG 29321 |||||||| ||||||||||||| |||||| |||||||||||||||||||||| |||||| Sbjct 40324 TGGATGATTAACTGCAAACGTTAGCAATGACATGAGCTTTCGTAGCAGTTAGCCAAAGCC 40265 Query 29322 GATT 29325 |||| Sbjct 40264 GATT 40261 >seq56095 Length=708 Score = 80.6 bits (88), Expect = 9e-11 Identities = 49/52 (94%), Gaps = 0/52 (0%) Strand=Plus/Minus Query 47750 AATGTCCGCTAATGCTTGTTGCGTGATTTTGTTCCATTGCTACACATACCCC 47801 ||||||||||||| ||| ||||||||||| |||||||||||||||||||||| Sbjct 52 AATGTCCGCTAATACTTATTGCGTGATTTGGTTCCATTGCTACACATACCCC 1 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 163728381406208