Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Arabis_20nordmanniana_20[genbank_20GCA_5F001484925.1_202016-01-04] 267,228 sequences; 342,306,570 total letters Query= NC_028749.1 Length=134270 Score E Sequences producing significant alignments: (Bits) Value seq158858 96.9 3e-15 >seq158858 Length=235449 Score = 96.9 bits (106), Expect = 3e-15 Identities = 431/673 (64%), Gaps = 10/673 (1%) Strand=Plus/Minus Query 112568 TTCTCAACAATTTTTTCAGCTTGTTGAATATTGCCTTGCGTTGGTGCAGATTGCGCTCTC 112627 ||||||||||| ||||| ||||| ||| || ||| | ||| || | ||| | | Sbjct 170777 TTCTCAACAATCTTTTCCGCTTGAGCAATGTTACCTGCTGATGGAGCTGCTTGTGGACGT 170718 Query 112628 ATGTAGTTGGATGGATTCATTTTCTCTGCAAATCTACGCGAGATTACATCAATAGA-ATA 112686 ||| | |||| | ||| ||||| ||||||| ||| | | ||||| || ||| Sbjct 170717 TGGTATTGTAATGGGTGCATCTTCTCAGCAAATCGACGACTAACTGAATCAAATGACATA 170658 Query 112687 TCCACTCACGATATCATCAAGTAATGTACCAATCATGCTACTCTTGATATGGCAAAAGCC 112746 ||| ||||||||||||| | || |||||||| || | | ||| || || || Sbjct 170657 -CCAGAAGCGATATCATCAAGAAGCGTTCCAATCATTGAGCTTCTAACATGACAGAAACC 170599 Query 112747 AGATGGTGCAGTGGCTACAGCCAACCAAGTGATATTATCTCGCTTTCTACTATTTTTGGC 112806 | ||||| || || ||||| |||||| || || ||| | | | ||||| | Sbjct 170598 TGTCGGTGCCGTAGCAACAGCTAACCAAACAATGTTTTCTTTATGGCGAGAGTTTTTAAC 170539 Query 112807 ATTTATACGTTTGTTGTGTAGTTC-CTGAACAAATTTGGCAACACC-AAGCACTCTGTCA 112864 ||| ||||| | |||| ||| || ||| ||| ||| ||| ||||||| | || Sbjct 170538 ATTGTCGCGTTTTTCATGTACTTCTCTAAAC-CATTCAGCAGTACCTAAGCACT-TCTCT 170481 Query 112865 GAGCGATAAAGTGTTTCAGATTCCAGAAGTGTTACAGCTTGATTTACAGCTTCAAGTGGA 112924 |||||||| | | ||| | || | |||| ||| ||||||| || | |||| || | Sbjct 170480 GAGCGATATAAAGATTCTGTTTTTAAAAGTCCTACCGCTTGATCCACTACATCAACTGAA 170421 Query 112925 TACTCTATAAGTCCAGAAACCAGAATCCGAAAATCTTCTTTCTTTTCTGCCATTTCCTGT 112984 ||||| || | | | | || || ||| |||||| ||||| ||||| | || Sbjct 170420 TACTCCATTAATGCTCTGATAAGCATTTTAAAGTCTTCTAATTTTTCAGCCATAACTTGA 170361 Query 112985 CCAGCAGTTTTCAGCATGGAACGATGAACTTTTTCTGTTGGGAGTGTTACTGACATATGT 113044 ||||| | | ||||||| ||| | | || | || || || | ||| Sbjct 170360 TGTGCAGTACGAATTACAGAACGATTTACTAATGTTTGAGGTAATGCGACAGATAAATGA 170301 Query 113045 TCCCACCCACCAAAAGTAGGTGTACCAAGAACTCTTTCACTCGAAACAAATACTCCTTTT 113104 ||| ||||| | ||| |||| | |||||| || | || |||||| || ||| Sbjct 170300 GTCCATTCACCAGTACGAGGAATACCTAATACTCTTGCATCTGGAATAAATACACCATTT 170241 Query 113105 ACTCTCGAAGCAAGCACAATTTTCTTCATTGCTTTAACAGCTTTAAGGAAGAATTTTGGA 113164 ||||| ||| | ||| ||| |||||||| ||| ||| |||||| ||| Sbjct 170240 ACTCTTGAATTTAACACCGCTTTTTTCATTGCAGAAACGGCTGGTGCGAAGAAACGTGGT 170181 Query 113165 GTTTCTTCTTCGTCCCACAAAACTGAA--CTTAATTCGCCATTCTCGAAAATCGAAACTA 113222 || ||||| | ||||| | ||| | || || ||||| || || | ||| | Sbjct 170180 GTAATATCTTCATTCCACATTGCAGAATTCATAGTT--CCATTTTCATCGATAGTAACAA 170123 Query 113223 GACCACCAAAACG 113235 ||||||| || || Sbjct 170122 GACCACCGAAGCG 170110 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 428140259014948