Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Arabis_20nordmanniana_20[genbank_20GCA_5F001484925.1_202016-01-04] 267,228 sequences; 342,306,570 total letters Query= NC_028762.1 Length=161989 Score E Sequences producing significant alignments: (Bits) Value seq26767 219 4e-52 seq244327 132 5e-26 seq190673 109 6e-19 seq48658 98.7 1e-15 >seq26767 Length=1149 Score = 219 bits (242), Expect = 4e-52 Identities = 298/413 (72%), Gaps = 7/413 (2%) Strand=Plus/Plus Query 137507 ATTAATTTGAACACCATAATCTAAATGACGAATACGGTTTTCTTCAATACCTTTATTATT 137566 ||||||||| || ||||||| | ||||| | | ||||||||||| || ||||||| Sbjct 42 ATTAATTTGTACTGCATAATCAACGTGACGTACTCTATTTTCTTCAATGCCCCTATTATT 101 Query 137567 TTTAAGAACTAACAATTTTTCTAATTCAAGGTGCCACATTGGGTAATATAAAGTAGCAGA 137626 ||| | |||||| || |||| | ||||| ||||| ||||| ||| ||| ||| || | Sbjct 102 TTTTAAAACTAATAAACTTTCAATTTCAAAATGCCATATTGGATAAAATATAGTTGCCGC 161 Query 137627 ACCACCTCGAATCCCACCTTGGGAACATGATTTTACAGA---TGCCAAATGGGTTTTCCA 137683 ||||||| || || ||||| ||||| |||||||||| | ||||| ||| | Sbjct 162 TCCACCTCTAACTCCTCCTTGAGAACAGGATTTTACAGCACTTTGAAAATG---TTTATA 218 Query 137684 AAATGGAATGACACCGGTATGGACAACTTCGCCAAATCCTATTTTAGACCCTTCAGCCCT 137743 ||| ||||| ||| ||||| | |||||||| || || | ||| | || | Sbjct 219 AAAAGGAATACAACCAGTATGAAATGCTTCGCCATTTCTAATAGGACTACCTACTGCACG 278 Query 137744 ATACATACCGGCATTAATACCAATACCAGCTCTTTTAGAAATGTATTTTACAATAGCTGC 137803 | | || |||||||||||||| || |||| || ||||| ||||||||||||| Sbjct 279 AATTTTTCCAGCATTAATACCAATTCCTGCTCGTTGAGAAACATATTTTACAATAGAACT 338 Query 137804 ATTTGTTTCATTAATAGAATCTAAAGAATCACCGCTATCAATAACTACGCAAGAACTAAA 137863 | | || | ||||||||||||| | |||| | | ||||| | || || || ||||| Sbjct 339 AGTAGTAGCGTTAATAGAATCTAGATTATCATCACATTCAATTAAAACACATGAGCTAAA 398 Query 137864 TTGACGTGTTGGGGTTCTTACACCAGACAAAATTGGTGTTGGTAAAGACAATT 137916 ||| || || || ||||| || ||||||| ||||||||| |||||||| |||| Sbjct 399 TTGTCGAGTAGGAGTTCTAACTCCAGACATAATTGGTGTCGGTAAAGA-AATT 450 >seq244327 Length=1302 Score = 132 bits (146), Expect = 5e-26 Identities = 232/335 (69%), Gaps = 2/335 (1%) Strand=Plus/Plus Query 135760 ATAATATGGGTATACGAACGAGAATGAATTGTTTCACTAAATGACCAGGTCTGAATCCAT 135819 |||||||| ||||| ||||| || ||||| ||||| ||| ||||| || | |||||| Sbjct 846 ATAATATGAGTATAAGAACGTGAGTGAATAGTTTCCGAAAAAGACCATGTTTCAATCCAG 905 Query 135820 GTTTCTAAAGATACATCAGAACAAATAGATAATAAAGCCTCTGAAGGACCTCTGCCTTGG 135879 |||||||| | |||| ||| | || ||||| ||||| ||| ||||| Sbjct 906 GTTTCTAATTCCGGAATAGAAATAATTGGTAGAAAAGCAATGTTAGGACTTCTTCCTTGA 965 Query 135880 ATTGAATCTAATAATGTTTGATATTTTAAATTATTAGTAAAGATTCTTTTTTCGTGTTCA 135939 || || ||||||||||||||||||||||||||| || ||| || |||||| |||||| Sbjct 966 ATAGAGTCTAATAATGTTTGATATTTTAAATTACTAAGAAAAATATGTTTTTCATGTTCA 1025 Query 135940 GGTAATTTGTCATATTGTGCCTTATCTGTCATTAAGTTTACTTCTTCAGGACGCCaaaaa 135999 ||||| || | | | | | ||||| | | || ||||||||| | ||||||| Sbjct 1026 GGTAAATTTTGAAAATCTATTCTATCTCGAGAGAGATCTATTTCTTCAGGTCTCCAAAAA 1085 Query 136000 aaGCTTAAAGCTTTTTCAGTCAAGTCTTCAAAGACCCGAT-GTTTTACTGTTTCGTAACG 136058 || | ||||||| | || | |||||| | || |||| ||| || || || Sbjct 1086 AAAGAGAGTTGTTTTTCAATTAATTTTTCAAAAATATTATATTTTTGCTG-ATCATATCG 1144 Query 136059 TGCAATACCTGTGGATTCACCAAAAAACATTGGTT 136093 |||||| | || ||||||||||| |||| Sbjct 1145 GGCAATATTGACAGGTTGTCCAAAAAACATAGGTT 1179 >seq190673 Length=317 Score = 109 bits (120), Expect = 6e-19 Identities = 186/264 (70%), Gaps = 12/264 (5%) Strand=Plus/Plus Query 136622 TCTTGGTGGCTCAATACCATTTGTGCTATTAGAAACTTGAGAAGATGATTCACAAGGCAT 136681 ||||||||| ||||| ||||| || |||||| | |||||| |||| ||| ||||||| Sbjct 52 TCTTGGTGGTTCAATTCCATTAGTTGCATTAGATATTTGAGAGGATGTTTCTGAAGGCAT 111 Query 136682 TAATGCAGATAAAGTACTGTTTCTGATACCGTATTGCTTAAGGTCTTTACGTAA-AGATT 136740 | ||||||||| || |||||| | || | || |||| | ||| || | ||| Sbjct 112 AAGTGCAGATAATGTTGAGTTTCTTAATCCATGTTTTTTAATTTTAGAACGCAATATATT 171 Query 136741 CCCAATCACAAACATATTCTGGTTTAAC---TACTTTATCAAGGTTTTTATTATACCAAT 136797 || |||| || || |||| | | || |||||||| || ||| || || || Sbjct 172 CC-AATCTAAATGCAAT---GGTTCATCGCATATTTTATCAATGTCTTTTTTGTATGTAT 227 Query 136798 CAATGGGTAATAAGCCTTGAGAATATTTAGTTTCATGA--TAAAGCTCACAAGGTCCTTT 136855 | || |||||| ||| | |||| ||||| | || | ||||| ||| | |||||| Sbjct 228 CTATAGGTAATTTACCTAAATAATAATTAGTGTGATTAAATAAAGA--ACATGCTCCTTT 285 Query 136856 TTCTTTTGCTAAATCAACAGAGGC 136879 |||||||||||||||| |||||| Sbjct 286 TTCTTTTGCTAAATCACAAGAGGC 309 >seq48658 Length=532 Score = 98.7 bits (108), Expect = 1e-15 Identities = 68/77 (88%), Gaps = 0/77 (0%) Strand=Plus/Plus Query 64869 CTACAGGATTCGAACCTGTGACCTAGGGCTTAGAAGGTCCTTGCTCTATCCAACTGAGCT 64928 |||||||||| |||||||||||||| ||||||||||| | |||||||||||||||||||| Sbjct 297 CTACAGGATTTGAACCTGTGACCTACGGCTTAGAAGGCCGTTGCTCTATCCAACTGAGCT 356 Query 64929 AAGTGTGCATTATTAAT 64945 ||| |||| | |||| Sbjct 357 AAGAACGCATAAATAAT 373 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 516505707705120