Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Arabis_20nordmanniana_20[genbank_20GCA_5F001484925.1_202016-01-04] 267,228 sequences; 342,306,570 total letters Query= NC_028765.1 Length=142348 Score E Sequences producing significant alignments: (Bits) Value seq158858 181 1e-40 seq111679 134 1e-26 seq151743 104 2e-17 >seq158858 Length=235449 Score = 181 bits (200), Expect = 1e-40 Identities = 391/577 (68%), Gaps = 12/577 (2%) Strand=Plus/Plus Query 125734 TTACTACAATGCAGATGTAGAAAAAGAAATGGTTGTTGCTTCCATCCCTGCTACTGAGCA 125793 ||| |||||||| | | ||||| ||| | || | | || || || |||||||| || Sbjct 214278 TTATTACAATGCGAACATTGAAAAGGAATTAGTAGGAACATCAATACCAGCTACTGAACA 214337 Query 125794 TTCAGTTATGTGTGCAAATGGTGATTATGAAACAATGGATGAATATGAGACATACAAACG 125853 ||||||||||| ||||| ||| || | ||||||| || | ||||| || Sbjct 214338 TTCAGTTATGTCAGCAAACACAGATGCAGATAGCCGTGATGAATTCGAAATGTACAAGCG 214397 Query 125854 TATGTTAACAGAAATTTACCCGACAGGAGTATTCTCTATTGTATCTGATACTTGGGATTT 125913 | | |||| || | || || | ||| | ||| | | || || || || | ||||| Sbjct 214398 TCTTATAACTGAGGTATATCCTAAAGGCTTCTTCAGTGTAGTTTCAGACACGTATGATTT 214457 Query 125914 TTGGG--GTAATATGACTAAAACTTTACCTAGA-TTAA-AAGATATTATTATGGAACGTG 125969 |||| ||| || || || ||| ||| | |||| ||| | || |||||||||| Sbjct 214458 CTGGGCAGTAGTAGGAGAAATTCTT--CCTCGTCTTAAGAAGGAA--ATCATGGAACGTG 214513 Query 125970 ACGGTAAAGTAGTAATCAGACCTGATAGTGGAGACCCTGTTAAGATTATTTGTGGAGACC 126029 | ||| | || || | ||||||||||||||||||||| ||| || ||| ||| Sbjct 214514 ATGGTCGTATGGTTATTCGTCCTGATAGTGGAGACCCTGTTCTTATTCTTACTGGTAACC 214573 Query 126030 CTGACGCAGATACTGAGTATGAACGTAAAGGTGCTGTAGAGGTGCTTTGGGATACTTTTG 126089 | || ||| | || || |||||||||||| | |||| | ||||||| |||| Sbjct 214574 CAGAAGCAAAAACAGAACTTGAACGTAAAGGACTAATTGAGGCTTTATGGGATATCTTTG 214633 Query 126090 GAGGTACTGAAACTGAAAAAGGATATAAAGTACTAGATGAGCATGTAGGATTAATTTATG 126149 | || || ||||| || || |||||| || ||||| ||| | || ||| |||| Sbjct 214634 GTGGAACAATTACTGAGAAGGGTTATAAACTATTAGATACTCATATTGGTGCAATCTATG 214693 Query 126150 GGGACTCTATTAACTATGAGCGTGCACATCAAAT--TTGTGAAGGATTAAAAGAAAAAGG 126207 | |||||||||| |||||||||| | || ||| |||| ||| |||||||||| Sbjct 214694 GTGACTCTATTACTCTTGAGCGTGCAAAAGCTATTGTTGAGAAG--TTAGAAGAAAAAGG 214751 Query 126208 TTTTGCAAGTATTAACGTTGTATTAGGTGTAGGTAGTTTCTCTTACCAATTTAATACTCG 126267 ||||| | |||||||| || || || || || ||| ||||| | | ||||| Sbjct 214752 CTTTGCTTCAACAAACGTTGTTTTCGGCGTGGGATCTTATACTTTCCAATATCAGACTCG 214811 Query 126268 TGATACTCATGGCTTTGCAATCAAAGCAACCTATGCT 126304 ||| ||| || ||||| || ||||| || |||||| Sbjct 214812 CGATTCTCTAGGGTTTGCTATGAAAGCTACATATGCT 214848 >seq111679 Length=1463 Score = 134 bits (148), Expect = 1e-26 Identities = 252/369 (68%), Gaps = 6/369 (2%) Strand=Plus/Plus Query 14892 TTGTACAAAGTTTACTAAATCC---TCATTACTTGATAGTTGGTGTTCTACCTTATTATC 14948 ||||||||| | |||||| || |||| ||| |||| | |||| | | ||| Sbjct 1089 TTGTACAAACTCTACTAATTCTGTATCATCACTA---AGTTTTTTCTCTAGTTCTTCATC 1145 Query 14949 ATAATCAAATTCAACTTGAGCAAAACGGTCTAATGTAGCTCCATCCAGTTGCTGTCTTCC 15008 ||| | ||| || | | |||| | ||| |||||||| |||| ||| || | ||| Sbjct 1146 ATAGTTAAAGTCTAAAAGTACAAACCTGTCCAATGTAGCAGCATCTAGTATATGACGTCC 1205 Query 15009 TACATAAATGTGGTCTGCCCCAGTTCCCATAGTATTACCTGCTGATACTACTCTAAAGTC 15068 | ||| ||||| || || | || | |||||| | || | ||||| |||| || Sbjct 1206 TGTATACTGCTGGTCAGCTCCCCTACCTGTTGTATTAGCAGCAGCCACTACAGTAAAATC 1265 Query 15069 TTCATGTGCTGTCACACGACCAATAGGGAAGTCAAAGTATTTATTTGCAATAGCTGAGTT 15128 ||||||| | |||| |||| || | |||||| ||| ||||| || | || Sbjct 1266 AGGATGTGCTTGAGCTTTACCATTAGGAAAATTAAAGTACCGATTAGCAATTGCAGCATT 1325 Query 15129 AAGAATTAGTAATACTTCAGGGATAGATGCATCCATCTCATCTAGGAAGAATAATCCTCC 15188 || || | ||| | || || | || |||||||| ||||||| ||| |||| || || Sbjct 1326 CAGTATAACTAAAGCCTCTGGTACCGAAGCATCCATTTCATCTAAGAAAAATATACCCCC 1385 Query 15189 ATTTGTAAATGCTTTATAAAACTGAGTTTCATGAAACTTACCATTTGCGTCAATAAATCC 15248 || ||||| |||| ||||||||||| || ||| | ||||| |||||||||||||| Sbjct 1386 CTTAGTAAAAGCTTGGTAAAACTGAGTCTCCTGATATGTACCAGAAGCGTCAATAAATCC 1445 Query 15249 TGTTAATTT 15257 |||||||| Sbjct 1446 AGTTAATTT 1454 >seq151743 Length=442 Score = 104 bits (114), Expect = 2e-17 Identities = 107/137 (78%), Gaps = 5/137 (4%) Strand=Plus/Plus Query 35710 CCTGGTAAGAGAGACTAAGTCCT--AACGGATAGAGTTAA--TACCGTGCTAAATCAACT 35765 ||| |||||||||||||| || || || | ||||| ||||||||||||||| || Sbjct 265 CCTAGTAAGAGAGACTAAACCCAGCAATGGGCAATGTTAACCTACCGTGCTAAATCAGCT 324 Query 35766 TATA-GAGTTGTAAATGCCGAACGACTAAATTTCTAGATAGCTTATTAAAAGGAATAAGT 35824 || ||| |||||||||| ||||||||||||||| | ||||| | ||| || | ||| Sbjct 325 CGTATGAGCTGTAAATGCCTAACGACTAAATTTCTGGGTAGCTGGTAAAATGGTACTAGT 384 Query 35825 GAAAACTAGATAAGAAA 35841 || ||| |||||||||| Sbjct 385 GAGAACCAGATAAGAAA 401 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 453864452711040