Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Arabis_20nordmanniana_20[genbank_20GCA_5F001484925.1_202016-01-04] 267,228 sequences; 342,306,570 total letters Query= NC_028773.1 Length=182145 Score E Sequences producing significant alignments: (Bits) Value seq249645 150 2e-31 seq244327 143 3e-29 >seq249645 Length=476466 Score = 150 bits (166), Expect = 2e-31 Identities = 224/315 (71%), Gaps = 2/315 (1%) Strand=Plus/Plus Query 20568 AAAAAGAAACTGTATCTGTGTATGCACGCCGTTAACGCACTGGAAGCAATTCGTTTCTAT 20627 |||||| | |||||||||| || || || |||| || ||||| |||||||||||| Sbjct 268755 AAAAAGCAGATGTATCTGTGCATCATGGCGGTCAACGTCCTAGAAGCCATTCGTTTCTAT 268814 Query 20628 GTTTCGTTTGCTTGCACCTTTGCATTTGCAGAAGATAAGAAAATGGAAGGCAGTGCTAAA 20687 || |||||||||||| | ||||| ||||| || || |||||||| | ||| ||| Sbjct 268815 GTCTCGTTTGCTTGCTCGTTTGCGTTTGCTGAGCGCAAATTGATGGAAGGTAATGCCAAA 268874 Query 20688 ATTATGCGTCTGATTGCGCGTGATGAACAACTGCACTTGAAAGGCACACAATATATGCTG 20747 || || || || || ||||||||| ||||| |||| ||| || || ||||||| Sbjct 268875 ATCATTAAGCTCATCGCTCGTGATGAAGCGCTGCATTTGACAGGTACGCAGCATATGCTA 268934 Query 20748 CGTATTTGGCAGCAA-GGTAAAGATGATCCTGAAATGATCGAAATTGCCAAAGAGTGTGA 20806 | || |||| ||| || |||||||| ||| |||| |||||| ||||||| Sbjct 268935 AACCTCATGC-GCAACGGTCGTGACGATCCTGAGATGGTCGAGATTGCCGCAGAGTGTTT 268993 Query 20807 AGAAGAAGCTGTTAAATTGTTCTTGGAAGTTGCCGAACAAGAAAAAGAATGGATCGATCA 20866 || ||| | || || | ||| ||| ||| || ||||||||||||||| | | Sbjct 268994 CGATGAAAGTATTGAAATCTTCCGCAAAGCTGCTGAGCAAGAAAAAGAATGGGCAGGCTA 269053 Query 20867 TCTGTTTAAATATGG 20881 |||||| ||| |||| Sbjct 269054 TCTGTTCAAAGATGG 269068 Score = 118 bits (130), Expect = 1e-21 Identities = 927/1478 (63%), Gaps = 60/1478 (4%) Strand=Plus/Plus Query 18310 CCAACCCCAATTATGGCAGGCGTTCGCACCCCAACCCGCCAGTT---CTCAAGCTGTGTT 18366 ||||| ||||| ||| |||| || || || ||| | || ||||| ||| || || || Sbjct 264559 CCAACGCCAATCATGTCAGGTGTGCGTACGCCATCGCGTCAGTTTAGCTCGTGC-GTCTT 264617 Query 18367 AAGATTGAAGTCGGTGACAGCCTCGAATCAATTAACGAATCAGCCGCCGCAGTCGTAAAT 18426 || | ||| ||||| ||| | || || || |||| | | ||| ||||| Sbjct 264618 AA--TCGAATGTGGTGATAGCTTAGACTCTATCAACGCCACCACTAGCGCCATCGTACGC 264675 Query 18427 TATATTAGTAAACGCGCTGGTATCGGTATTAACGCTGGTCGAATTCGTGCGGAAGGAAGT 18486 ||| | | || ||||||||||| || ||||| ||||| || ||||| || || Sbjct 264676 TATGTGTCACAGCGTGCTGGTATCGGCATCAACGCAGGTCGTATCCGTGCCCTTGGTAGC 264735 Query 18487 CAAGTTCGCTCTGGTGAAGTCAAACACACTGGTGTTATTCCATTCTGGAAACATTTCCAG 18546 | | || ||||||| | || ||||| |||||| || | ||| ||||| Sbjct 264736 CCTATCCGTGGCGGTGAAGCACAGCATACTGGCTGTATTCCTTTTTATAAATTGTTCCAA 264795 Query 18547 ACTGCTGTTAAATCGTGTTCACAAGGCGGTGTTCGTGGTGGTGCGGCAACTCTGTATTAT 18606 || || ||||||| || |||||||| || || ||||| ||||| || || ||| || Sbjct 264796 ACGGCCGTTAAATGCTGCTCACAAGGTGGCGTACGTGGCGGTGCTGCGACGTTGTTCTAC 264855 Query 18607 CCTATGTGGCATCTTGAATTCGAAAAGCTGATTGTTCTGAAAAATAACAAAGGTGTTGAT 18666 || | |||||| | ||| | || | | || || ||||||||| |||||||| Sbjct 264856 CCACTATGGCATTTAGAAGTTGAGTCATTACTGGTACTCAAAAATAACCGCGGTGTTGAA 264915 Query 18667 GAAAACCGCATTCGTCAGCTTGATTATGGTCTACAAATCAATAAACTGATGTTCGAACGT 18726 || ||||| | ||||| | || || || |||| | || ||| ||||| | || Sbjct 264916 GACAACCGTGTCCGTCATATGGACTACGGCGTACAGTTAAACAAAACGATGTACACGCGC 264975 Query 18727 TTGGTTGCCGATGATTATGTAACTCTGTTCAGTCCAGACGTTGCAGCCGGTCGCCTGTAC 18786 | | | | | | | | || ||| |||| || | | | | |||| ||| Sbjct 264976 CTCATCAAAGGTCAAGACATCTCGCTATTCTCACCAGGCGATACCCCAG---GCCTTTAC 265032 Query 18787 GATTATTTCTTTGAAGATGAAGCGAAGTTCAAAGAACTGTATGAAACGCTGGAAAAAGAT 18846 ||| |||||||||||| ||| || ||| |||| | || | | ||||| ||| Sbjct 265033 GATGCGTTCTTTGAAGATCAAGACAAATTCGAAGAGTTATACACCAAGTACGAAAACGAT 265092 Query 18847 CCTACGATTCGTAAGAAGCGTATCAAAGCGCGTGACATTTTCACGACTGCAATGATG--- 18903 |||| | |||| | ||| |||| ||| | || | | || ||||||| Sbjct 265093 CCTAACGTGCGTAGCCGTCAAATCCCAGCGGCAGACTTGTTTA-GTCT--AATGATGCAA 265149 Query 18904 GAAAGAGCTAACACTGGTCGCGTTTATATTCAGTTTGT-GACCAACGTTAACGAAAACAG 18962 || | || | ||| ||||| | || || || || || || | ||| |||| Sbjct 265150 GAGCGCGCCAGCACAGGTCGTATCTACATCCAAAACGTCGATCATTG-CAACACGCACAG 265208 Query 18963 TCCTTTCGA---------TGAACCTATTAAGATGTCCAACTTGTGTGTTGAGATTTGTTT 19013 || || || || || ||| ||| ||| | ||| | || || | Sbjct 265209 CCCATTTGACGCGACGGTTGCGCCGATTCGCCAGTCAAACCTATGTATGGAAATCGCCCT 265268 Query 19014 ACCGACTTATCCA----ATCACGAAGAATATCGAAGAATCCGAGATTGCTCTGTGTACTC 19069 |||||| | ||| || || | ||| ||||| | ||| || || || ||||| | Sbjct 265269 ACCGACCAAGCCACTTGATAAC-ATCAATGACGAAGCAGGCGAAATCGCCCTATGTACGC 265327 Query 19070 TGTCGGCGTTCAATCTTGGTAAAATTGAAAGTCTTCA-TGATTTCGAAAAAGCTGCCCGC 19128 | || ||| |||| | |||||| | |||| | ||| || ||| || ||| ||| Sbjct 265328 TATCAGCGGTCAACTTGGGTAAAGTCGAAA-ACGTCAGCGACATCG-AAGAGCCAGCCGA 265385 Query 19129 GTTGCT-GTTCGAGCACTGGATAACCTGCTTGATTATCAAGAATATCCGATGGAAGCAGC 19187 | | | || || || || ||| ||| || || || ||||| ||||| | |||| || Sbjct 265386 GCTAATCGTGCGTGCGCTTGATGCCCTACTCGACTACCAAGACTATCCCGTCAAAGCGGC 265445 Query 19188 ATTAAAAGGTC----TGAAACGTCGTTCATTAGGAATCGGTATTACCAACTTTGCTTATT 19243 | |||| | | || |||||| | |||| | || | | |||| ||| |||| Sbjct 265446 -TCAAAACGGCAGCATGCGTCGTCGTACGCTAGGTGTAGGCGTGATTAACTATGCGTATT 265504 Query 19244 ATCTCGCGAAAAATTACGTGAAATATTCAGACGGTTCAGCTAATGAATTGGTTCACGAAA 19303 | | || |||||| |||| ||||| |||| || || || || | | Sbjct 265505 ACTTAGCCAAAAATGGCGTGCGCTATTCTGACGACAGCGCGCTTGGTCTGACCCATCAGA 265564 Query 19304 TGATGGAAGCATTCCAGTATTATCTGCTTAAAGCTTCGATGGAATTAGCAAAAGAGCGTG 19363 | | |||||||| |||| ||||| | ||||| || | |||| |||||||||| | Sbjct 265565 CGTTTGAAGCATTGCAGTTCTATCTCTTAAAAGCGTCAAACAAATTGGCAAAAGAGCAAG 265624 Query 19364 GTGCTTGTGAATATTTCCACAAAACGTCATATTCTCGCGGCGTTCTACCGATTGATCGAT 19423 | || ||| ||| | | || | || || | || | | ||||||||| | Sbjct 265625 GCGCGTGTCCTGCGTTCAATGAGACCACCTACTCACAAGGTATCTTGCCGATTGATACGT 265684 Query 19424 ACAAGAAA-ACTGTTGACA--ATCT-TGTTGATCCAGTGTATCGTATGGACTGGGAAGCG 19479 |||| ||| ||| | || | |||| || ||| | | | | || |||||| || Sbjct 265685 ACAAAAAAGACT-TGGATAAGATCTGCCAAGAGCCACT---ACATTTAGATTGGGAAACG 265740 Query 19480 CTTCGTGCCGACATCATGAAATATGGTCTTCGTAACTCTACGTTGTCAGCGCTGATGCCT 19539 || |||| ||| |||| | | ||||| || |||||||| | | || ||||||| Sbjct 265741 CTACGTGGCGAGATCACTGAGCACGGTCTGCGCAACTCTACCCTAACCGCCTTGATGCCG 265800 Query 19540 TGTGAA---TCAAGTTCACAGATCACCAACTCCACGAACGGTATCGAGCCGCCTCGTCAG 19596 | |||| |||||| |||||| |||| | || |||||||||||||| || ||| Sbjct 265801 TCTGAAACCTCAAGT---CAGATCGCCAATGCGACCAACGGTATCGAGCCACCACGTGGT 265857 Query 19597 TTGCTGAGTGTAAAACAGTCTAAAGACGGTGTACTGAATCAGCTTGTTCCTGAAGTTGAA 19656 || | | | ||| || ||||| || | | || || | || ||||| |||| Sbjct 265858 CTGGTCTCTATCAAAGCATCAAAAGATGGCATCTTAAAGCAAGTCGTGCCTGAGATTGAC 265917 Query 19657 ATTTTAGCTTCTGAGTATGAACTAGCATGGCAAATGGCAGATAAAGGTATGAAAGGTTAT 19716 | || | |||| || ||| |||||||||| | | || | | ||||| Sbjct 265918 AAGCTAAAAGATCAGTACGAGCTACTATGGCAAATGCCGAACAATG------ACGGTTAC 265971 Query 19717 CTGTCTCTGGTTGCTATCATGCAAAAATTCTGTGATCA 19754 || ||||| |||||||||||||||||| ||||| Sbjct 265972 CTAAAGCTGGTCGCTATCATGCAAAAATTCGTCGATCA 266009 >seq244327 Length=1302 Score = 143 bits (158), Expect = 3e-29 Identities = 243/351 (69%), Gaps = 6/351 (2%) Strand=Plus/Minus Query 20021 TAATCACTTAATGCAACCTATGTTTTTCGGTGATGAACCTGG---TATTGCGCGTTACGA 20077 |||||| ||| | ||||||||||||| || | ||||| |||||| || || || Sbjct 1193 TAATCAACTAAAGGAACCTATGTTTTTTGGACA---ACCTGTCAATATTGCCCGATATGA 1137 Query 20078 TACCCAGAAACATGAAATGTTCGAAAACTTAATTGAAAAGCAGTTGAGTTTCTTCTGGCG 20137 | || ||| || | || || ||||| ||||||||||| || | ||| || ||| | Sbjct 1136 TCAGCAAAAATATAATATTTTTGAAAAATTAATTGAAAAACAACTCTCTTTTTTTTGGAG 1077 Query 20138 TCCTGAAGAGGTTGACGTAACTCGTGATAAGATCGATTATGATAATTTACCAGAACATGA 20197 |||||||| | || | |||| |||| || |||| | | |||||||| |||||||| Sbjct 1076 ACCTGAAGAAATAGATCTCTCTCGAGATAGAATAGATTTTCAAAATTTACCTGAACATGA 1017 Query 20198 AAAACATATCTTTACTTCCAATTTGAAGTATCAGAGCTTACTCGATACCGTTCAGGGACG 20257 ||||||||| ||| | ||||| || ||||| | ||| | || | |||| ||| | Sbjct 1016 AAAACATATTTTTCTTAGTAATTTAAAATATCAAACATTATTAGACTCTATTCAAGGAAG 957 Query 20258 TGCTCCTAACACTGCTTTTATGTCCATCGTATCTGATGTAACACTTGACACATGGATTCC 20317 |||||||| ||||||| | | || | ||| | | | || || |||||| Sbjct 956 AAGTCCTAACATTGCTTTTCTACCAATTATTTCTATTCCGGAATTAGAAACCTGGATTGA 897 Query 20318 TACCTGGGCGTTCTCGGAGACAATCCACAGTCGTTCTTATACACACATTAT 20368 || ||| | || ||||| || || ||| ||||||||||| || ||||| Sbjct 896 AACATGGTCTTTTTCGGAAACTATTCACTCACGTTCTTATACTCATATTAT 846 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 580789457802400