Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Arabis_20nordmanniana_20[genbank_20GCA_5F001484925.1_202016-01-04]
267,228 sequences; 342,306,570 total letters
Query= NC_028773.1
Length=182145
Score E
Sequences producing significant alignments: (Bits) Value
seq249645 150 2e-31
seq244327 143 3e-29
>seq249645
Length=476466
Score = 150 bits (166), Expect = 2e-31
Identities = 224/315 (71%), Gaps = 2/315 (1%)
Strand=Plus/Plus
Query 20568 AAAAAGAAACTGTATCTGTGTATGCACGCCGTTAACGCACTGGAAGCAATTCGTTTCTAT 20627
|||||| | |||||||||| || || || |||| || ||||| ||||||||||||
Sbjct 268755 AAAAAGCAGATGTATCTGTGCATCATGGCGGTCAACGTCCTAGAAGCCATTCGTTTCTAT 268814
Query 20628 GTTTCGTTTGCTTGCACCTTTGCATTTGCAGAAGATAAGAAAATGGAAGGCAGTGCTAAA 20687
|| |||||||||||| | ||||| ||||| || || |||||||| | ||| |||
Sbjct 268815 GTCTCGTTTGCTTGCTCGTTTGCGTTTGCTGAGCGCAAATTGATGGAAGGTAATGCCAAA 268874
Query 20688 ATTATGCGTCTGATTGCGCGTGATGAACAACTGCACTTGAAAGGCACACAATATATGCTG 20747
|| || || || || ||||||||| ||||| |||| ||| || || |||||||
Sbjct 268875 ATCATTAAGCTCATCGCTCGTGATGAAGCGCTGCATTTGACAGGTACGCAGCATATGCTA 268934
Query 20748 CGTATTTGGCAGCAA-GGTAAAGATGATCCTGAAATGATCGAAATTGCCAAAGAGTGTGA 20806
| || |||| ||| || |||||||| ||| |||| |||||| |||||||
Sbjct 268935 AACCTCATGC-GCAACGGTCGTGACGATCCTGAGATGGTCGAGATTGCCGCAGAGTGTTT 268993
Query 20807 AGAAGAAGCTGTTAAATTGTTCTTGGAAGTTGCCGAACAAGAAAAAGAATGGATCGATCA 20866
|| ||| | || || | ||| ||| ||| || ||||||||||||||| | |
Sbjct 268994 CGATGAAAGTATTGAAATCTTCCGCAAAGCTGCTGAGCAAGAAAAAGAATGGGCAGGCTA 269053
Query 20867 TCTGTTTAAATATGG 20881
|||||| ||| ||||
Sbjct 269054 TCTGTTCAAAGATGG 269068
Score = 118 bits (130), Expect = 1e-21
Identities = 927/1478 (63%), Gaps = 60/1478 (4%)
Strand=Plus/Plus
Query 18310 CCAACCCCAATTATGGCAGGCGTTCGCACCCCAACCCGCCAGTT---CTCAAGCTGTGTT 18366
||||| ||||| ||| |||| || || || ||| | || ||||| ||| || || ||
Sbjct 264559 CCAACGCCAATCATGTCAGGTGTGCGTACGCCATCGCGTCAGTTTAGCTCGTGC-GTCTT 264617
Query 18367 AAGATTGAAGTCGGTGACAGCCTCGAATCAATTAACGAATCAGCCGCCGCAGTCGTAAAT 18426
|| | ||| ||||| ||| | || || || |||| | | ||| |||||
Sbjct 264618 AA--TCGAATGTGGTGATAGCTTAGACTCTATCAACGCCACCACTAGCGCCATCGTACGC 264675
Query 18427 TATATTAGTAAACGCGCTGGTATCGGTATTAACGCTGGTCGAATTCGTGCGGAAGGAAGT 18486
||| | | || ||||||||||| || ||||| ||||| || ||||| || ||
Sbjct 264676 TATGTGTCACAGCGTGCTGGTATCGGCATCAACGCAGGTCGTATCCGTGCCCTTGGTAGC 264735
Query 18487 CAAGTTCGCTCTGGTGAAGTCAAACACACTGGTGTTATTCCATTCTGGAAACATTTCCAG 18546
| | || ||||||| | || ||||| |||||| || | ||| |||||
Sbjct 264736 CCTATCCGTGGCGGTGAAGCACAGCATACTGGCTGTATTCCTTTTTATAAATTGTTCCAA 264795
Query 18547 ACTGCTGTTAAATCGTGTTCACAAGGCGGTGTTCGTGGTGGTGCGGCAACTCTGTATTAT 18606
|| || ||||||| || |||||||| || || ||||| ||||| || || ||| ||
Sbjct 264796 ACGGCCGTTAAATGCTGCTCACAAGGTGGCGTACGTGGCGGTGCTGCGACGTTGTTCTAC 264855
Query 18607 CCTATGTGGCATCTTGAATTCGAAAAGCTGATTGTTCTGAAAAATAACAAAGGTGTTGAT 18666
|| | |||||| | ||| | || | | || || ||||||||| ||||||||
Sbjct 264856 CCACTATGGCATTTAGAAGTTGAGTCATTACTGGTACTCAAAAATAACCGCGGTGTTGAA 264915
Query 18667 GAAAACCGCATTCGTCAGCTTGATTATGGTCTACAAATCAATAAACTGATGTTCGAACGT 18726
|| ||||| | ||||| | || || || |||| | || ||| ||||| | ||
Sbjct 264916 GACAACCGTGTCCGTCATATGGACTACGGCGTACAGTTAAACAAAACGATGTACACGCGC 264975
Query 18727 TTGGTTGCCGATGATTATGTAACTCTGTTCAGTCCAGACGTTGCAGCCGGTCGCCTGTAC 18786
| | | | | | | | || ||| |||| || | | | | |||| |||
Sbjct 264976 CTCATCAAAGGTCAAGACATCTCGCTATTCTCACCAGGCGATACCCCAG---GCCTTTAC 265032
Query 18787 GATTATTTCTTTGAAGATGAAGCGAAGTTCAAAGAACTGTATGAAACGCTGGAAAAAGAT 18846
||| |||||||||||| ||| || ||| |||| | || | | ||||| |||
Sbjct 265033 GATGCGTTCTTTGAAGATCAAGACAAATTCGAAGAGTTATACACCAAGTACGAAAACGAT 265092
Query 18847 CCTACGATTCGTAAGAAGCGTATCAAAGCGCGTGACATTTTCACGACTGCAATGATG--- 18903
|||| | |||| | ||| |||| ||| | || | | || |||||||
Sbjct 265093 CCTAACGTGCGTAGCCGTCAAATCCCAGCGGCAGACTTGTTTA-GTCT--AATGATGCAA 265149
Query 18904 GAAAGAGCTAACACTGGTCGCGTTTATATTCAGTTTGT-GACCAACGTTAACGAAAACAG 18962
|| | || | ||| ||||| | || || || || || || | ||| ||||
Sbjct 265150 GAGCGCGCCAGCACAGGTCGTATCTACATCCAAAACGTCGATCATTG-CAACACGCACAG 265208
Query 18963 TCCTTTCGA---------TGAACCTATTAAGATGTCCAACTTGTGTGTTGAGATTTGTTT 19013
|| || || || || ||| ||| ||| | ||| | || || |
Sbjct 265209 CCCATTTGACGCGACGGTTGCGCCGATTCGCCAGTCAAACCTATGTATGGAAATCGCCCT 265268
Query 19014 ACCGACTTATCCA----ATCACGAAGAATATCGAAGAATCCGAGATTGCTCTGTGTACTC 19069
|||||| | ||| || || | ||| ||||| | ||| || || || ||||| |
Sbjct 265269 ACCGACCAAGCCACTTGATAAC-ATCAATGACGAAGCAGGCGAAATCGCCCTATGTACGC 265327
Query 19070 TGTCGGCGTTCAATCTTGGTAAAATTGAAAGTCTTCA-TGATTTCGAAAAAGCTGCCCGC 19128
| || ||| |||| | |||||| | |||| | ||| || ||| || ||| |||
Sbjct 265328 TATCAGCGGTCAACTTGGGTAAAGTCGAAA-ACGTCAGCGACATCG-AAGAGCCAGCCGA 265385
Query 19129 GTTGCT-GTTCGAGCACTGGATAACCTGCTTGATTATCAAGAATATCCGATGGAAGCAGC 19187
| | | || || || || ||| ||| || || || ||||| ||||| | |||| ||
Sbjct 265386 GCTAATCGTGCGTGCGCTTGATGCCCTACTCGACTACCAAGACTATCCCGTCAAAGCGGC 265445
Query 19188 ATTAAAAGGTC----TGAAACGTCGTTCATTAGGAATCGGTATTACCAACTTTGCTTATT 19243
| |||| | | || |||||| | |||| | || | | |||| ||| ||||
Sbjct 265446 -TCAAAACGGCAGCATGCGTCGTCGTACGCTAGGTGTAGGCGTGATTAACTATGCGTATT 265504
Query 19244 ATCTCGCGAAAAATTACGTGAAATATTCAGACGGTTCAGCTAATGAATTGGTTCACGAAA 19303
| | || |||||| |||| ||||| |||| || || || || | |
Sbjct 265505 ACTTAGCCAAAAATGGCGTGCGCTATTCTGACGACAGCGCGCTTGGTCTGACCCATCAGA 265564
Query 19304 TGATGGAAGCATTCCAGTATTATCTGCTTAAAGCTTCGATGGAATTAGCAAAAGAGCGTG 19363
| | |||||||| |||| ||||| | ||||| || | |||| |||||||||| |
Sbjct 265565 CGTTTGAAGCATTGCAGTTCTATCTCTTAAAAGCGTCAAACAAATTGGCAAAAGAGCAAG 265624
Query 19364 GTGCTTGTGAATATTTCCACAAAACGTCATATTCTCGCGGCGTTCTACCGATTGATCGAT 19423
| || ||| ||| | | || | || || | || | | ||||||||| |
Sbjct 265625 GCGCGTGTCCTGCGTTCAATGAGACCACCTACTCACAAGGTATCTTGCCGATTGATACGT 265684
Query 19424 ACAAGAAA-ACTGTTGACA--ATCT-TGTTGATCCAGTGTATCGTATGGACTGGGAAGCG 19479
|||| ||| ||| | || | |||| || ||| | | | | || |||||| ||
Sbjct 265685 ACAAAAAAGACT-TGGATAAGATCTGCCAAGAGCCACT---ACATTTAGATTGGGAAACG 265740
Query 19480 CTTCGTGCCGACATCATGAAATATGGTCTTCGTAACTCTACGTTGTCAGCGCTGATGCCT 19539
|| |||| ||| |||| | | ||||| || |||||||| | | || |||||||
Sbjct 265741 CTACGTGGCGAGATCACTGAGCACGGTCTGCGCAACTCTACCCTAACCGCCTTGATGCCG 265800
Query 19540 TGTGAA---TCAAGTTCACAGATCACCAACTCCACGAACGGTATCGAGCCGCCTCGTCAG 19596
| |||| |||||| |||||| |||| | || |||||||||||||| || |||
Sbjct 265801 TCTGAAACCTCAAGT---CAGATCGCCAATGCGACCAACGGTATCGAGCCACCACGTGGT 265857
Query 19597 TTGCTGAGTGTAAAACAGTCTAAAGACGGTGTACTGAATCAGCTTGTTCCTGAAGTTGAA 19656
|| | | | ||| || ||||| || | | || || | || ||||| ||||
Sbjct 265858 CTGGTCTCTATCAAAGCATCAAAAGATGGCATCTTAAAGCAAGTCGTGCCTGAGATTGAC 265917
Query 19657 ATTTTAGCTTCTGAGTATGAACTAGCATGGCAAATGGCAGATAAAGGTATGAAAGGTTAT 19716
| || | |||| || ||| |||||||||| | | || | | |||||
Sbjct 265918 AAGCTAAAAGATCAGTACGAGCTACTATGGCAAATGCCGAACAATG------ACGGTTAC 265971
Query 19717 CTGTCTCTGGTTGCTATCATGCAAAAATTCTGTGATCA 19754
|| ||||| |||||||||||||||||| |||||
Sbjct 265972 CTAAAGCTGGTCGCTATCATGCAAAAATTCGTCGATCA 266009
>seq244327
Length=1302
Score = 143 bits (158), Expect = 3e-29
Identities = 243/351 (69%), Gaps = 6/351 (2%)
Strand=Plus/Minus
Query 20021 TAATCACTTAATGCAACCTATGTTTTTCGGTGATGAACCTGG---TATTGCGCGTTACGA 20077
|||||| ||| | ||||||||||||| || | ||||| |||||| || || ||
Sbjct 1193 TAATCAACTAAAGGAACCTATGTTTTTTGGACA---ACCTGTCAATATTGCCCGATATGA 1137
Query 20078 TACCCAGAAACATGAAATGTTCGAAAACTTAATTGAAAAGCAGTTGAGTTTCTTCTGGCG 20137
| || ||| || | || || ||||| ||||||||||| || | ||| || ||| |
Sbjct 1136 TCAGCAAAAATATAATATTTTTGAAAAATTAATTGAAAAACAACTCTCTTTTTTTTGGAG 1077
Query 20138 TCCTGAAGAGGTTGACGTAACTCGTGATAAGATCGATTATGATAATTTACCAGAACATGA 20197
|||||||| | || | |||| |||| || |||| | | |||||||| ||||||||
Sbjct 1076 ACCTGAAGAAATAGATCTCTCTCGAGATAGAATAGATTTTCAAAATTTACCTGAACATGA 1017
Query 20198 AAAACATATCTTTACTTCCAATTTGAAGTATCAGAGCTTACTCGATACCGTTCAGGGACG 20257
||||||||| ||| | ||||| || ||||| | ||| | || | |||| ||| |
Sbjct 1016 AAAACATATTTTTCTTAGTAATTTAAAATATCAAACATTATTAGACTCTATTCAAGGAAG 957
Query 20258 TGCTCCTAACACTGCTTTTATGTCCATCGTATCTGATGTAACACTTGACACATGGATTCC 20317
|||||||| ||||||| | | || | ||| | | | || || ||||||
Sbjct 956 AAGTCCTAACATTGCTTTTCTACCAATTATTTCTATTCCGGAATTAGAAACCTGGATTGA 897
Query 20318 TACCTGGGCGTTCTCGGAGACAATCCACAGTCGTTCTTATACACACATTAT 20368
|| ||| | || ||||| || || ||| ||||||||||| || |||||
Sbjct 896 AACATGGTCTTTTTCGGAAACTATTCACTCACGTTCTTATACTCATATTAT 846
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 580789457802400
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