Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Arabis_20nordmanniana_20[genbank_20GCA_5F001484925.1_202016-01-04] 267,228 sequences; 342,306,570 total letters Query= NC_028780.1 Length=167124 Score E Sequences producing significant alignments: (Bits) Value seq26767 217 2e-51 seq249645 109 6e-19 seq127984 96.9 4e-15 >seq26767 Length=1149 Score = 217 bits (240), Expect = 2e-51 Identities = 317/444 (71%), Gaps = 12/444 (3%) Strand=Plus/Minus Query 22764 CGTTTTTATGAAGCAGTATCTACTCGACAGATTTCATTGCCAACTCCTATTATGGCTGGT 22823 ||||||||| | || | || ||| | ||||| || || || || |||||| |||| Sbjct 479 CGTTTTTATAATGCCATTTCAACTTTCAAAATTTCTTTACCGACACCAATTATGTCTGGA 420 Query 22824 TGTCGTACTCCGACTCGACAGTTTAGTTCATGCGTTGTTATTGAGGCAGGTGAT--TCAT 22881 | | ||||| |||||||| ||||| ||||| ||| | ||||| | ||||| | || Sbjct 419 GTTAGAACTCCTACTCGACAATTTAGCTCATGTGTTTTAATTGA---ATGTGATGATAAT 363 Query 22882 -TAAAGTCTATCAATAAGGCTTCCGCT---TCAATTGTTGAATATATCTCTAAACGCGCT 22937 || | ||||| ||| ||| | || || ||||| ||||| | ||| |||| || Sbjct 362 CTAGATTCTAT---TAACGCTACTACTAGTTCTATTGTAAAATATGTTTCTCAACGAGCA 306 Query 22938 GGAATTGGTATTAACGTTGGTATGATTCGTGCCGAAGGTTCTAAGATTGGCATGGGTGAA 22997 |||||||||||||| | ||| | |||||||| | |||| | ||| | | || ||| Sbjct 305 GGAATTGGTATTAATGCTGGAAAAATTCGTGCAGTAGGTAGTCCTATTAGAAATGGCGAA 246 Query 22998 GTACGCCATACTGGTGTTATTCCTTTTTGGAAACATTTTCAGACTGCTGTTAAATCATGT 23057 | | ||||||||| ||||||||||| ||||||||||| | |||||| ||||| ||| Sbjct 245 GCATTTCATACTGGTTGTATTCCTTTTTATAAACATTTTCAAAGTGCTGTAAAATCCTGT 186 Query 23058 TCACAGGGCGGAATTCGTGGTGGCGCTGCTACTGCTTATTATCCTATTTGGCATTTGGAA 23117 || || || ||| || | ||||| || || ||| | |||||| || |||||||| ||| Sbjct 185 TCTCAAGGAGGAGTTAGAGGTGGAGCGGCAACTATATTTTATCCAATATGGCATTTTGAA 126 Query 23118 GTTGAAAATCTTCTCGTTTTGAAAAATAACAAAGGTGTAGAAGAAAACCGCATTCGTCAT 23177 |||||| | | | ||||| |||||||| | || | |||||||| | | ||||| Sbjct 125 ATTGAAAGTTTATTAGTTTTAAAAAATAATAGGGGCATTGAAGAAAATAGAGTACGTCAC 66 Query 23178 ATGGATTATGGTGTTCAACTGAAT 23201 | ||||||| || ||| | ||| Sbjct 65 GTTGATTATGCAGTACAAATTAAT 42 >seq249645 Length=476466 Score = 109 bits (120), Expect = 6e-19 Identities = 270/407 (66%), Gaps = 12/407 (3%) Strand=Plus/Plus Query 22794 ATTTCATTGCCAACTCCTATTATGGCTGGTTGTCGTACTCCGACTCGACAGTTTAGTTCA 22853 || ||| | ||||| || || ||| | ||| ||||| || | || |||||||| || Sbjct 264550 ATCTCACTACCAACGCCAATCATGTCAGGTGTGCGTACGCCATCGCGTCAGTTTAGCTCG 264609 Query 22854 TGCGTTGTTATTGAGGCAGGTGATTCATTAAAGTCTATCAATAAGGCTTCCGCTT---CA 22910 ||||| | || || |||||| ||| | |||||||| || || || | Sbjct 264610 TGCGTCTTAATCGAATGTGGTGATAGCTTAGACTCTATCAAC---GCCACCACTAGCGCC 264666 Query 22911 ATTGTTGAATATATCTCTAAACGCGCTGGAATTGGTATTAACGTTGGTATGATTCGTGCC 22970 || || ||| | || | || ||||| || || || |||| ||| || |||||| Sbjct 264667 ATCGTACGCTATGTGTCACAGCGTGCTGGTATCGGCATCAACGCAGGTCGTATCCGTGCC 264726 Query 22971 GAAGGTT---CTAAGATTGGCATGGGTGAAGTACGCCATACTGGTGTTATTCCTTTTTGG 23027 ||| ||| |||| ||||||| || |||||||| ||||||||||| Sbjct 264727 CTTGGTAGCCCTATCCGTGGC---GGTGAAGCACAGCATACTGGCTGTATTCCTTTTTAT 264783 Query 23028 AAACATTTTCAGACTGCTGTTAAATCATGTTCACAGGGCGGAATTCGTGGTGGCGCTGCT 23087 ||| || || || || ||||||| || ||||| || || | ||||| || ||||| Sbjct 264784 AAATTGTTCCAAACGGCCGTTAAATGCTGCTCACAAGGTGGCGTACGTGGCGGTGCTGCG 264843 Query 23088 ACTGCTTATTATCCTATTTGGCATTTGGAAGTTGAAAATCTTCTCGTTTTGAAAAATAAC 23147 || | || || | |||||||| |||||||| | || || | ||||||||| Sbjct 264844 ACGTTGTTCTACCCACTATGGCATTTAGAAGTTGAGTCATTACTGGTACTCAAAAATAAC 264903 Query 23148 AAAGGTGTAGAAGAAAACCGCATTCGTCATATGGATTATGGTGTTCA 23194 ||||| ||||| ||||| | ||||||||||| || || || || Sbjct 264904 CGCGGTGTTGAAGACAACCGTGTCCGTCATATGGACTACGGCGTACA 264950 Score = 84.2 bits (92), Expect = 2e-11 Identities = 70/86 (81%), Gaps = 0/86 (0%) Strand=Plus/Plus Query 24066 ACAAACGGTATCGAGCCTCCACGTGGACCAGTCTCTGTTAAAGAATCAAAAGAGGGCTCC 24125 || |||||||||||||| |||||||| | |||||| | |||| ||||||||| ||| | Sbjct 265831 ACCAACGGTATCGAGCCACCACGTGGTCTGGTCTCTATCAAAGCATCAAAAGATGGCATC 265890 Query 24126 TTTAATCAAGTCGTGCCCAATATTGA 24151 || || ||||||||||| | ||||| Sbjct 265891 TTAAAGCAAGTCGTGCCTGAGATTGA 265916 >seq127984 Length=21361 Score = 96.9 bits (106), Expect = 4e-15 Identities = 73/86 (85%), Gaps = 0/86 (0%) Strand=Plus/Plus Query 93006 TTTGCGGATATCGTATAATGGTATTACCTCAGACTTCCAATCTGATGATGTGAGTTCGAT 93065 ||||||| | | || || ||||| ||||||| ||||||| ||||||||| ||||||||| Sbjct 19834 TTTGCGGGTGTAGTTTAGTGGTAAAACCTCAGCCTTCCAAGCTGATGATGAGAGTTCGAT 19893 Query 93066 TCTCATTATCCGCTCCAATTTATGAC 93091 |||| | | ||||||||||||||||| Sbjct 19894 TCTCTTCACCCGCTCCAATTTATGAC 19919 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 532882819073920